TCONS_00064700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064700
Unique NameTCONS_00064700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length928

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064700 ID=TCONS_00064700|Name=TCONS_00064700|organism=Clytia hemisphaerica|type=transcript|length=928bp
GTTTGAAGattcgaaaataaaaacatacgGCTCTATAATGGATTTGACTC
AAGTTTTCAATGTTCTTGTAATGTTGTGGATGGCTAAAGCAAGATCAATC
ATTTCTAAgGACTACTCTTTTATTGGCATCGGAGATTCTCAACCAACCAT
ACCAGTTCAAGAAAAGttATACGAATTTTGTAAGAATAAACCAAAGATTT
GCAAGGACATCATTATGAACAGCAGTCGAAATAAAAAAGAGACGGATGAC
ACAAACACCCAATTATCGGAGAATGAATTTTTCTCGGACAAATTTCGGAC
AGTAAAAGATGTCGAAAAAGAAGATCAGCTTTTTACTCAAAATGAGGCAG
AtgaaattattcaaaatGTCTTTGAGATATTGGGTTATTGCATACATAAT
CGGAGTGAATGCCCTTTATTGGCTAGCCATGAACCCATATATAACGACCA
AGAGTTTAAAAGAGCGAAAATCAATGAGCAAAGCGTCAAGTCTGTGCCGG
AGATTTTAGGCAAATGGTGCGCAGACCTTCCAAAGGAATGTGCCAAAGCG
TTAAAATTCGGCTAAAGATCAACCATGGACAATTACTACTTATATAGTTT
TATGTAAcagaaaaataatatttgcgcTGACAAGCAATGTTGGATGACAA
AGATCCAAACCCAATGATGGGAGACCGTTGATTTaggatattcatgacgt
aatgttttatacggaagcatcCAAAAATAGTCTGGCTGTTAGCCTCTAGT
TTTCAAAATTCGTGGCAAACACCCGGTGTTTTTTTGGTGTTTccatataa
aacattacgtcctGAATCATCACGTATTATGAAGtttatgtaaaattatt
ttagtcATTGTTAATATATAAAAGCAAAGTCTTATTTTCTAAACCTCTCC
TCCAAAATATATACATTCCAAACGAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_421:52317..57270-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064700 ID=TCONS_00064700|Name=TCONS_00064700|organism=Clytia hemisphaerica|type=transcript|length=4954bp|location=Sequence derived from alignment at scaffold_421:52317..57270- (Clytia hemisphaerica)
GTTTGAAGATTCGAAAATAAAAACATACGGCTCTATAATGGATTTGACTC
AAGTTTTCAATGTTCTTGTAATGTTGTGGATGGCTAAAGCAAGATCAATC
ATTTCTAAGGTAAGAAGAAAGAAAAACATGTTGTGAAAATATATATCAAC
CCTCTTTTTACCGTACGGCAATTGAATGGTGATGATGGTGGCGTCATAGA
TTTCTGTAAAGTCCGAAGGGCTAGATGCCATGCTTTATGGGGGGCGTACG
GGGGTCACCAACACCAAAATCTTTCTTTAACAGTCAAACACCGTATGGCA
TGTTTAACAACGAAAAACAATCTTTTTTCCTTCAAACATCGAAACACCGG
TAGAAAATAGGGTCATTTCATGAATCTATTGTTTTCCAAGCTTCGACGGG
GCTAGATCCAAAACTCCAGCAGGATAGGAAATGAAGCCTCTTAGCCCCTT
TCAGAACACGTGGACCCGTGTTTTTTCCAACAAAATTTCTAAATGCGGGG
AAAACCTAAGGCTTCACTTTTTCTTGCTTGAGAAATATTGATGATTCATC
TCTAGCCCTTTCGGGGCTTCAAAATCAATGTAAGAATCTTGAAAAAAAGT
CAGCTACATTTTTTTATAAAGGCAAGTAAACTTTTGTTAAGGCTCGGTGG
TGGTTATTTTATTGATATTTTGAGCCTCATATTGTACCTTGTCCTGTTTT
TATTTTTAGGACATTGAGGTATTTTAGGCCTTTTTCCTGATTTCTAATAC
TTTGCCCTTAAATACACGGGCTGCAAAATTATATCAATACAGTCAAAACA
TGTGATTACTCGAAAAAGTTCACTTGATTTTAATCCCATGTTATTGCTTT
ACAACTTACAGCTGATTACTCTATTAGTATCAATAAATTCGAACCAATCA
GAAATAAATGTCATGTAACAAACACATAAAAATTTCGAGTAAAAACGTGA
TTTGTCTCCAGACTTTAATTTTGAAACCTGTATGTTAAAGTCTATTCACG
ATAAGTGTGCACTCTTTTTTCTTTTACCTATAACTTTTGAAGGAATTCTT
CAATCTTTATAAATTTGGTATCATCTGAAAGATATTAGTGAGTGGAACAA
TTTGAAATAAAAAAATATTTAAAAAAATTCTAAAAATGAAAATGAAAATG
AAAAAGAAAAAAAATGAAGATCTAGTAGGAAAGTGCTATAACTACACGTT
TTTTTTTATTAGAACCTAGTTTATAAGAACATATAGGCTGAAATTCGTCG
AAAAATTAAGAACATCTTAAGAACATGCCCAGCCTCAGTTTGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCAGTTTGGAAAAA
AATGACAAGAAACTACAATTTTTTCCTCTTTTTAAGCAGTTTTAACCGAA
TTTAGGGGTGGATCTTCAAAAGTCGAGAGTCAAATACTGTACAAATTTTG
CCAAATTAAAGTGCTCTTTATTTTGTATCGTATTATCGATTTAGAGTAGT
CTGAGAAATTAAGAACGCATTTAAGAACATTTTAGGCTGAAAATTGCTAA
AAAAAATAAGCACATCCAGGCTCAGCCAAATTTTAGGTTTAGGCTGATTG
ACGTCTAAAAACGCTGTTTTCTGCTGTTTTTTGCTGTTTTTTTGGGGTCA
ATCACTTATCAACTTTATATCATAACTTTATATTGAATAAATATTTTAAT
GAAACCTTTTCACAGTGATAACCTCCTAAGATCAAAGAATCTCTTGAGTG
AAAATGAAAGTTATAGCACTTCTCTACAAGATCTTCATTTTTTTCTTCTT
CATTTTCATCTTCATTTTTAGAATTTTTTTAAATATTTTTTTATTTCAAA
TTGTTCCATTCACTAATATCTTTCAGATGATACCAAATTTATAAAAATTG
AAGAATTCCTTCAAAAGTTATAGGTAAAAGAAAAAAGAGTGCACACTTAT
CGTGAATAGACTTTAATTGATGTAATTCAATGCAAGGCTCAGCATTGGGT
TTGATTTTTCTTATTATTTGATGATTTTGAGCCTCGTTGTTCTTATAAAA
TCTTTATAAAAGTGTTTATTTTTTAGGACTACTCTTTTATTGGCATCGGA
GATTCTCAACCAACCATACCAGTTCAAGAAAAGGTATTTCATAATAGTTA
AGGAAATTTCGAGTTATCAAGAGTAAGGTGTATAAGGCATTTTTTGGCCA
GCGAAGCCTTATGTTCTTATATAGTTTGTTCGTATAAAAAATAACGGTTA
TAAGGCATTGTTAACTGAAGGGACTGTTCGAGTTGGGGAGACACTCGAGT
TATAGAGGTTCGAGTTGAAGAAACTCCATTGTACTAAGATACTAATGCAT
CTTTTTGTTTCTATTTCAGTTACACGAATTTTGTAAAAATAAACCAAAGA
TTTGCAAGGACATCATTATGAATAGCAGTCGAAATAAAAAAGAGACAGTT
GACACAAACACCCAATTATCAGTTCAAGAAAAGGTATTTCATAATAACAC
ATGGCTCATTTCTGGCTAAAAACTAAGAACACATATGAACACACTATGAT
CCAGGTCACGAAATTTACAATAAGCTTGAATAATACTGATTTGAGCTTTT
AATGGGCTAATCCACTTTAAATCTGTTAAATCTTAATTGATGCAGGCCCA
TGATATATACGTACATGATTACTAATTAGGGGTGGAATAAATATACTATC
CCTGTTTACGCAGGCTTCATTTTTACCGTGAAGATTTTTTTTTTTACCTT
TTTTACTCTAATGTCTTCTGAGATAACTCAGATCTTCCTGATAGAAAACT
TTTATCACCAATAAAGATTTTCTGAAGCATTCCTTGTGTATGCAAAAAAT
GACTTCGTTGGAGTCTTCATGAACCGAACATGCATGGGGAACACAATTTT
TTTCGAGCTAAGGAACCTCTTCGAGTTAAGGACTAAGGTGTGTCATGGAG
AAAGAGTGGCACCATAGGTTAGATATCTATCGAAAGAGAAGCCGCGGTCG
CAGATTTACTTATAGGGCATTGTCAAGGCCGATCTCCACTTTCACGCGAA
CTGAGCGAAAATTCTTTAACGTTTTTGTAAGGTCATTGGTCAGTTTAGCC
TATACTTCTATCCTATCTTTTTGTTTCTTTTTCAGTTATACGAATTTTGT
AAGAATAAACCAAAGATTTGCAAGGACATCATTATGAACAGCAGTCGAAA
TAAAAAAGAGACGGATGACACAAACACCCAATTATCGGAGAATGAATTTT
TCTCGGACAAATTTCGGACAGTAAAAGATGTCGAAAAAGAAGATCAGCTT
TTTACTCAAAATGAGGCAGATGAAATTATTCAAAATGTAAGGATATCTAT
ATAATGACAGCCTTACGTGTCTAAAGCTTTTGTTTTTTTTTTGCAGCTTT
TTTTTCGCTAGCGATTTTAGCGAGGCTTTTTATTAGGGGGTATAAAGCAA
CATGTTTCTGCCTGTTTTATTAAAAATATGAATAGTCGAATCCCCAGCTA
ATGAAACAGAGAAAGCCGTCTTTGACGGCGTCTATACAATTTTTTCAGCC
AGTGGGGGTAAAAATAACGAACTGAAACACAATGAGGATTGATATTCCCA
CATCTTTTATGGCTGGGGATTTAAATTCTATTGTTTTCAAGTTAGAAACT
TCAGTGGGGATTGGAAAAACAGCATAATATTTTGCAGTATGGGTTAGTTT
ATTTGATTATTTTCACTGGGGACAAAAACTGGGGATGATTTTCCACCGGG
GACCATAGTTTGGCCAATTTTTCCAGTGGGGAATAGGGCTTACAGTGGGT
CTGTGAAAAGGGGGTGAATAATACTATACAGAGTGCTTCATTGATTATTT
TCTTTCAATGATATTATGATCATTTTAAGGCAAAATAAGTAAGGCAAAAT
TGGACTAAAAAGATATTTTGAACATTTTTAACAGGTCTTTGAGATATTGG
GTTATTGCATACATAATCGGAGTGAATGCCCTTTATTGGCTAGCCATGAA
CCCATATATAACGACCAAGAGTTTAAAAGAGCGAAAATCAATGAGCAAAG
CGTCAAGTCTGTGGTAAGTATCTTTGTTGGGTGACGACTTTTATACATTA
GAGTCTCCTTAACTTATTAACTCGATTTTTTCTTTACCTCGGATAAGTGT
TTAATCAAAATCCATTAAGTTCCACTGGCTTCATACAAAATAGGTCTTCA
CCTAGGAACACCTTACCGTCCGAATTTAAAACTAAGTCGGGATTGTCAAT
TTAGTTGGGGTGCATTTGAAAGAAAAAATTATAATCGAAATGAAAATTTT
TCAATTGACCTAGCTATGAAGATTTAACTCTTAATTTCGATTTCTCTGAA
CTGCTACCATACTGCTAAAACTGTTAATTGATAGCCCCCCTTTTTTATTT
ATAAATTTTCTATATTTTTTAGCCGGAGATTTTAGGCAAATGGTGCGCAG
ACCTTCCAAAGGAATGTGCCAAAGCGTTAAAATTCGGCTAAAGATCAACC
ATGGACAATTACTACTTATATAGTTTTATGTAACAGAAAAATAATATTTG
CGCTGACAAGCAATGTTGGATGACAAAGATCCAAACCCAATGATGGGAGA
CCGTTGATTTAGGATATTCATGACGTAATGTTTTATACGGAAGCATCCAA
AAATAGTCTGGCTGTTAGCCTCTAGTTTTCAAAATTCGTGGCAAACACCC
GGTGTTTTTTTGGTGTTTCCATATAAAACATTACGTCCTGAATCATCACG
TATTATGAAGTTTATGTAAAATTATTTTAGTCATTGTTAATATATAAAAG
CAAAGTCTTATTTTCTAAACCTCTCCTCCAAAATATATACATTCCAAACG
AAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040583XLOC_040583Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064700-exon-scaffold_421-1575043694:57162..57270TCONS_00064700-exon-scaffold_421-1575043694:57162..57270Clytia hemisphaericaexon
TCONS_00064700-exon-scaffold_421-1575043694:55038..55094TCONS_00064700-exon-scaffold_421-1575043694:55038..55094Clytia hemisphaericaexon
TCONS_00064700-exon-scaffold_421-1575043694:53835..54035TCONS_00064700-exon-scaffold_421-1575043694:53835..54035Clytia hemisphaericaexon
TCONS_00064700-exon-scaffold_421-1575043694:53108..53236TCONS_00064700-exon-scaffold_421-1575043694:53108..53236Clytia hemisphaericaexon
TCONS_00064700-exon-scaffold_421-1575043694:52317..52748TCONS_00064700-exon-scaffold_421-1575043694:52317..52748Clytia hemisphaericaexon
TCONS_00064700-exon-scaffold_421-1510915933:57162..57270TCONS_00064700-exon-scaffold_421-1510915933:57162..57270Clytia hemisphaericaexon
TCONS_00064700-exon-scaffold_421-1510915933:55038..55094TCONS_00064700-exon-scaffold_421-1510915933:55038..55094Clytia hemisphaericaexon
TCONS_00064700-exon-scaffold_421-1510915933:53835..54035TCONS_00064700-exon-scaffold_421-1510915933:53835..54035Clytia hemisphaericaexon
TCONS_00064700-exon-scaffold_421-1510915933:53108..53236TCONS_00064700-exon-scaffold_421-1510915933:53108..53236Clytia hemisphaericaexon
TCONS_00064700-exon-scaffold_421-1510915933:52317..52748TCONS_00064700-exon-scaffold_421-1510915933:52317..52748Clytia hemisphaericaexon
TCONS_00064700-exon-scaffold_421-1491911889:57162..57270TCONS_00064700-exon-scaffold_421-1491911889:57162..57270Clytia hemisphaericaexon
TCONS_00064700-exon-scaffold_421-1491911889:55038..55094TCONS_00064700-exon-scaffold_421-1491911889:55038..55094Clytia hemisphaericaexon
TCONS_00064700-exon-scaffold_421-1491911889:53835..54035TCONS_00064700-exon-scaffold_421-1491911889:53835..54035Clytia hemisphaericaexon
TCONS_00064700-exon-scaffold_421-1491911889:53108..53236TCONS_00064700-exon-scaffold_421-1491911889:53108..53236Clytia hemisphaericaexon
TCONS_00064700-exon-scaffold_421-1491911889:52317..52748TCONS_00064700-exon-scaffold_421-1491911889:52317..52748Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_421supercontigscaffold_421:52317..57270 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.197373	0.0962347	0	0.109318	0	0	0.0634384	0	0.249483	0	0	0.0328623	0	0	0	1.56829	0.324927	0.94496	4.11617	0	1.13546	0	0	0.174642	0.603201	0	1.40007	0.288831	0.109534	0.055799
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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