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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064697 ID=TCONS_00064697|Name=TCONS_00064697|organism=Clytia hemisphaerica|type=transcript|length=1287bp
tatttttcaggtGGCCCAACAAGAGAAGAACGGAtaaaaaataaggataa
aaGTTGTATATAAATTAAACCTAACAAAGGAAAAAACATCTTGTACATTG
AAACATTCTATCAATATAAAAAGGATCCCAACGAAATTGAAACAAAATGG
CGCATAATTAAGGATATCAATACCTTATTTATAACTTTCATTGATATTAA
AGTTGAAATATTATACtatcaaatccaaaaaaacaaaatacattgaataa
aaaaaaacagaccaATAAGATAAAGACAAAATTTTAAACTGTGCTATTTT
AGAAGAACTATTGTTTCAGTATATTGGTacaaatatactttataagccAA
CAAATTTCCAAGAGGAAAGTGGATATTCATTCAATAGAAGAAGATTGGAC
GTGGGGTAAACGGAAAAAACACATCAATCCAAACCATCCGGACAGACAAA
GTCTTATTGTGTCTTTTTCGGACACCTGGTACATTTCGTTTACAGTTATT
GTAAATTGGTTTGTGAATGAACATTGTTTTTTATCGGCTTGGATATAGAA
GATATATAAAGATCAATCTTGAAAGGTCGAGAAAGTATACGAATCGGGGA
AGAGCTACTTGGGAATAAAAATCTCAAAGGATTGAGATTAAAGAGGACAC
AATAATTTTACGAAATGGATAAACTATATACTGTTTGGCTGGCACTTATA
GGAGGCTTCTTAATTTCGACAGTTTCTGGTGATCACAAACAATATGACGG
AAATACATCACAGCAGTATTCAGACGGTGAACTATGCCAAATATCAGCAA
CtcgaaaaatgttaaaatcaCTTGGTATCACgaatataaaaaagtgtatt
attaACTCAAAAAGAGATATTGCAAACCTTGTATCAACATATTTAAACAT
TGAACCAGAATATACGAGAGGAGTATCACAGAAAAGAAGCAACATTCTCC
AACCTAAAGATAATTGGGATCAAGTGGAAATTGAATTGGACCAAGTGTTC
AAAGATATTTTCCACGGAAAACGAGAGCGACAATACTGCTGCAGTCCACT
GTGCACGCCCTTCATGAGGAACCTCGGCTGGCCGAATCCCGCCCTTATAA
GCtgtgaagacaaataatagacaATGGAATCATAAAAAAAGCATTATAAA
AATGACTCAAAGACAACTTTTTCGCATGGACACCCGTTTATAATATTTAC
AAATCAAAACACTTTCTTGGAGGGAATTGCTACTTTTTTTCGGTATTCAT
AATACTTGTGTCATACGAAAGCACCACATTAAATCAG Run BLAST on NCBI protein sequence of TCONS_00064697-protein >TCONS_00064697-protein ID=TCONS_00064697-protein|Name=TCONS_00064697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MDKLYTVWLALIGGFLISTVSGDHKQYDGNTSQQYSDGELCQISATRKML
KSLGITNIKKCIINSKRDIANLVSTYLNIEPEYTRGVSQKRSNILQPKDN
WDQVEIELDQVFKDIFHGKRERQYCCSPLCTPFMRNLGWPNPALISCEDK Run BLAST on NCBI transcript from alignment at scaffold_421:88297..93645+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064697 ID=TCONS_00064697|Name=TCONS_00064697|organism=Clytia hemisphaerica|type=transcript|length=5349bp|location=Sequence derived from alignment at scaffold_421:88297..93645+ (Clytia hemisphaerica)
tatttttcaggtGGCCCAACAAGAGAAGAACGGAtaaaaaataaggataa
aaGTTGTATATAAATTAAACCTAACAAAGGAAAAAACATCTTGTACATTG
AAACATTCTATCAATATAAAAAGGATCCCAACGAAATTGAAACAAAATGG
CGCATAATTAAGGATATCAATACCTTATTTATAACTTTCATTGATATTAA
AGTTGAAATATTATACtatcaaatccaaaaaaacaaaatacattgaataa
aaaaaaacagaccaATAAGATAAAGACAAAATTTTAAACTGTGCTATTTT
AGAAGAACTATTGTTTCAGTATATTGGTacaaatatactttataagccAA
CAAATTTCCAAGAGGAAAGTGGATATTCATTCAATAGAAGAAGATTGGAC
GTGGGGTAAACGGAAAAAACACATCAATCCAAACCATCCGGACAGACAAA
GTCTTATTGTGTCTTTTTCGGACACCTGGTACATTTCGTTTACAGTTATT
GTAAATTGGTTTGTGAATGAACATTGTTTTTTATCGGCTTGGATATAGAA
GATATATAAAGATCAATCTTGAAAGGTCGAGAAAGTATACGAATCGGGGA
AGAGCTACTTGGGAATAAAAATCTCAAAGGATTGAGATTAAAGAGGACAC
AATAATTTTACGAAATGGATAAACTATATACTGTTTGGCTGGCACTTATA
GGTATGTATTTCGTCTTAGATTCGTTTACTATACAATAGGCAATTCGCTT
TTTAGCCTTACTCTTATGAGTAGGAGTTTTGCGCTCGAAATGAAGGAAGA
ATCTTTTTAACGATTTTCAGTTTAATATCAAAGAGGACTTTAAATATAAA
CTAAATTTTACCAGGTAAAtcaaattttctgttttgactTTATGTTAGGC
CTAACTATCCCTAAACAATGACTTATATTTCTCAAATTTATAAATCAATT
ATGAGGTATTTTCTTTGCCGCCCATAATTGAAGGAGATATTCCATTTAAA
GGCtctcgttaaagtcttttgtgTGCTCAataggtttaaaatttttattc
caAGTCCAAGAGTTAAACGATGTAACGTAACCCGGCAATGTGAACTGCAT
ATTTAGGTTTTTTCGGGAAAACACTTTCTTTAGTTACTGAGAAACAAATC
ATTACCTTGACCTTAGATGTTTATTTTCAGCTGCATTTTCCCCTTTCAAT
CAAGATTTCAGTGTTTTACTGAATCTTATCTGTATCCCAGACCTATTGGG
ATTACAGATATCTTATACTAGATCGAGCTTTTCCTACcctatttcaagca
aaaaaaatcgccATCTTGGATGTAGTGACGTCACAATTTAGCTTGCGAGA
TCCTCGAAATTTTGAAGTCGTTGCCAGTATCAAAAAGGCTTGTggcctac
tttcagcaaagatggtggattattttgcttcacccgCCGTTGTTTGGGAA
ATACAGACTGGTTCTATCTAGTGTTTCATATATTGTAAGATATCTGTGCC
TATACCTTACAAGTTCAGCTGTACTGGGAAATTGAATTTGATATTATTCC
CATTTGTAATTCAATGGGGAAAGATGCGAATCAAAACCATCCCTATCTGG
AATTTCAAACTTAGAAGCTTGTATCCTCACTGTGAGAAAATGTTCCACCG
AGGCAATATGACaggataaaatgaaaacaattctCGCAATAAGAcaggat
aaaatgaaaaacaattctCGCAGGTACTGAACATATGAGTACCCTCACCA
CACCACATTCAATGTTCGGCAAATCtccccacactcttgtatcagagtga
tggtacctAATTCCCCTCACTTGGTATGGGTTGATCCAGGTCAAGGTACA
TTCAAGTTCATTCAAGCCAAGTGAATGTGACTTTTTGACAGGTTGtactg
atttttcaaaaaatccaaaaaattgatttgtttttattcttGTTTTAGGA
GGCTTCTTAATTTCGACAGTTTCTGGTGATCACAAACAATATGACGGTAA
TTTTTTGTCAAACTCTAAattaatttaaaggattttcacTTTTCCAAGTC
GTGCAAGCTTATATGTTGAGAAGTTCTATTGTTTATTCTTAGTAAGagca
tggaattattatagacactggaaaaacaatgagctgatttttgccaattt
ctcatgtacaagccttgtccgcagtaatgacattattgttcaccctcctt
cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ccaattcccaaatgagactttaagttctcctccgagattcaaactcgtct
agttaattactaattatacgtcgttctgacgttttaaatttcgagaaaga
AGGAAAAACATGttatgtacagggtgtccctaattaaagtatcgagtttg
aacatgcgattgagtagaaaagtttttgtgtgttatcactaaaatataag
aacgttctccatcacacaggcttattacaaaaggtagttacaacgtataa
attaatcgtaatgacaaagaaaaagaagaaaaaggagggagagcttaaaa
tacaattttgtgaacacgcacataaaacttttctactcttagttgtgttt
cgactcgatactttaattagggacaccctgtataaaaaattgaatattga
caccagaaatttttaaacttcaacctaaaaaaatccactgtgccaccacg
tgccaccaaaagatttttataCCACAGTGCAGCTATGAGACTCACATCTT
atatatgtcaatctcagctcttctcggagaaatattggaaagatattccc
aattcaaaatttcgtgtcattataagcattttcttggTTTTACTTAtctg
atgatttttttctcacaccagatttcataaatgtatccgtttggtattct
agcattcATTTAACTCGATAGGGGTCGATAATCCCCTGAggattttgata
ttattttcgggccagaaaattcagagtcgatggaaaaaatagcataatat
tttaaaatgtaGATTTGCTTACCTGATTaatttcagcggggacaaaaaat
GGAATATAGTTTTCACtgaggacgatattttggcgACTTTTtttagtggg
tctgtgagaagggggtgtttttttctacTTGACTTTgcaatttattttca
ttctttCTCTTTCTTAGGAAATACATCACAGCAGTATTCAGACGGTGAAC
TATGCCAAATATCAGCAACtcgaaaaatgttaaaatcaCTTGGTATCACg
aatataaaaaagtgtattattaACTCAAAAAGAGGTAAAACAATTTTGAG
TCAGTAGTAAGATTCCCACTTAAGCTTCACTTGGTAAATAAATGAACACG
CTTTTGCTCCGGTCCACCCATATACCATATGAGTGGAATAATTAGGTACC
ACTACTGGTAAAGAACGCGGGTCATAGTATCTTGTATTCACATAACCAAT
GGTGTATGTATGTGTCTGGACAGCACTTTGCATTCCTACTTTAAAGAAGG
AGGGATTAGGGAATAGGATCCATTCCCCAATAAGGAGGGTACATGTCATA
TCATTCACAATCGTTGACAGAACTACTGTCTAATACTGCCCAATAACCTA
TTTCTCAATGCTGAGTCCCCCTTCCCCAGCTttcaatagcgagtttatgt
attcgagataaatcgagggggacgatatgaagcaaagttgacatgtctag
tccaaaatcaccgtccactttgctcgacgacggtaaaaacaccaagatac
cgtcgtctgtttaggtaagCAAAGGTGATATAGAGctgtacatcaactat
cgacttttgttttgtatcgatttcacttaccgtctcCCTCGATattctcc
gatacataaactcggtaattaTGAAGGGAGGAATGTTATAACTCCCACTG
ACCCCACACCAACACTGAAGACGTCCAGGACTGTAGTatattttaaaact
gttttgttACCCAGATATTGCAAACCTTGTATCAACATATTTAAACATTG
AACCAGAATATACGAGAGGAGTATCACAGAAAAGAAGCAACATTCTCCAA
CCTAAAGATAATTGGGATCAAGTGGAAATTGAATTGGACCAAGTGTTCAA
AGATATTTTCCACGGAAAACGAGGTAAATGTtgacttttgatgcattaat
ttagaacatttttccgaaaaatttaaaacagttcaattctttgcggacag
tttgaaaaaactggttaattacccattaaaacttagcactNAGCACACTT
AAAACTAATCAatggaatttttggaaaatcatctCATTCGGAAACCATAG
CTCTTCCCCTTTTGGAAtagtaccgagtttatgtatgtgtctTTTTTTGG
GAAGGAGACGGTAaagttctaatttgactagatcctgaccaactgaggac
gacggtataTCAGCTCTTTTACCGTCCTTGATTTTGCGGGTCATAAGCgt
gggttattccaaatcgctacagtcactctaccgtcctcaaaagtgcaaac
acataaactcgctagtgACGGGGACTGGCAAGGTCTGTCACACAAGGTAA
CACAAGGGTGTAGTCAACGCTTATTGAGTAGATTGATTCTTGAGGTTTGC
CCTCTTGTATATCCTTTATGAAGCCCGAGCAGCAATAACAAACAGTCACT
TCATTTTTTCCATACTTGCTACTTATACTCTTATGATTTTTATTTGAAGC
CCTATTACCTAATTGCTGCTCGGgttttttttgtccgttttaccacccta
aaactgtcccagtctttttttcgctcctatagacaataaaaaaaggtgta
aaaaaggattggatcgagtttagaggGATAACTAAATAATAGTGGCACAc
gtctgaccgcgcgactacggtcgaaaaggtgtattcattttcttttgttg
aacatttttttaatttagaatttattttataTTGCAGAGCGACAATACTG
CTGCAGTCCACTGTGCACGCCCTTCATGAGGAACCTCGGCTGGCCGAATC
CCGCCCTTATAAGCtgtgaagacaaataatagacaATGGAATCATAAAAA
AAGCATTATAAAAATGACTCAAAGACAACTTTTTCGCATGGACACCCGTT
TATAATATTTACAAATCAAAACACTTTCTTGGAGGGAATTGCTACTTTTT
TTCGGTATTCATAATACTTGTGTCATACGAAAGCACCACATTAAATCAG Coding sequence (CDS) from alignment at scaffold_421:88297..93645+ >TCONS_00064697 ID=TCONS_00064697|Name=TCONS_00064697|organism=Clytia hemisphaerica|type=CDS|length=2265bp|location=Sequence derived from alignment at scaffold_421:88297..93645+ (Clytia hemisphaerica)
ATGGATAAACTATATACTGTTTGGCTGGCACTTATAGGAGGCTTCTTAAT
TTCGACAGTTTCTGGTGATCACAAACAATATGACGGAAATACATCACAGC
AGTATTCAGACGGTGAACTATGCCAAATATCAGCAACtcgaaaaatgtta
aaatcaCTTGGTATCACgaatataaaaaagtgtattattaACTCAAAAAG
AGATATTGCAAACCTTGTATCAACATATTTAAACATTGAACCAGAATATA
CGAGAGGAGTATCACAGAAAAGAAGCAACATTCTCCAACCTAAAGATAAT
TGGGATCAAGTGGAAATTGAATTGGACCAAGTGTTCAAAGATATTTTCCA
CGGAAAACGAGAGCGACAATACTGCTGCAGTCCACTGTGCACGCCCTTCA
TGAGGAACCTCGGCTGGCCGAATCCCGCCCTTATAAGCtgtgaagacaaa
taaATGGATAAACTATATACTGTTTGGCTGGCACTTATAGGAGGCTTCTT
AATTTCGACAGTTTCTGGTGATCACAAACAATATGACGGAAATACATCAC
AGCAGTATTCAGACGGTGAACTATGCCAAATATCAGCAACtcgaaaaatg
ttaaaatcaCTTGGTATCACgaatataaaaaagtgtattattaACTCAAA
AAGAGATATTGCAAACCTTGTATCAACATATTTAAACATTGAACCAGAAT
ATACGAGAGGAGTATCACAGAAAAGAAGCAACATTCTCCAACCTAAAGAT
AATTGGGATCAAGTGGAAATTGAATTGGACCAAGTGTTCAAAGATATTTT
CCACGGAAAACGAGAGCGACAATACTGCTGCAGTCCACTGTGCACGCCCT
TCATGAGGAACCTCGGCTGGCCGAATCCCGCCCTTATAAGCtgtgaagac
aaataaATGGATAAACTATATACTGTTTGGCTGGCACTTATAGGAGGCTT
CTTAATTTCGACAGTTTCTGGTGATCACAAACAATATGACGGAAATACAT
CACAGCAGTATTCAGACGGTGAACTATGCCAAATATCAGCAACtcgaaaa
atgttaaaatcaCTTGGTATCACgaatataaaaaagtgtattattaACTC
AAAAAGAGATATTGCAAACCTTGTATCAACATATTTAAACATTGAACCAG
AATATACGAGAGGAGTATCACAGAAAAGAAGCAACATTCTCCAACCTAAA
GATAATTGGGATCAAGTGGAAATTGAATTGGACCAAGTGTTCAAAGATAT
TTTCCACGGAAAACGAGAGCGACAATACTGCTGCAGTCCACTGTGCACGC
CCTTCATGAGGAACCTCGGCTGGCCGAATCCCGCCCTTATAAGCtgtgaa
gacaaataaATGGATAAACTATATACTGTTTGGCTGGCACTTATAGGAGG
CTTCTTAATTTCGACAGTTTCTGGTGATCACAAACAATATGACGGAAATA
CATCACAGCAGTATTCAGACGGTGAACTATGCCAAATATCAGCAACtcga
aaaatgttaaaatcaCTTGGTATCACgaatataaaaaagtgtattattaA
CTCAAAAAGAGATATTGCAAACCTTGTATCAACATATTTAAACATTGAAC
CAGAATATACGAGAGGAGTATCACAGAAAAGAAGCAACATTCTCCAACCT
AAAGATAATTGGGATCAAGTGGAAATTGAATTGGACCAAGTGTTCAAAGA
TATTTTCCACGGAAAACGAGAGCGACAATACTGCTGCAGTCCACTGTGCA
CGCCCTTCATGAGGAACCTCGGCTGGCCGAATCCCGCCCTTATAAGCtgt
gaagacaaataaATGGATAAACTATATACTGTTTGGCTGGCACTTATAGG
AGGCTTCTTAATTTCGACAGTTTCTGGTGATCACAAACAATATGACGGAA
ATACATCACAGCAGTATTCAGACGGTGAACTATGCCAAATATCAGCAACt
cgaaaaatgttaaaatcaCTTGGTATCACgaatataaaaaagtgtattat
taACTCAAAAAGAGATATTGCAAACCTTGTATCAACATATTTAAACATTG
AACCAGAATATACGAGAGGAGTATCACAGAAAAGAAGCAACATTCTCCAA
CCTAAAGATAATTGGGATCAAGTGGAAATTGAATTGGACCAAGTGTTCAA
AGATATTTTCCACGGAAAACGAGAGCGACAATACTGCTGCAGTCCACTGT
GCACGCCCTTCATGAGGAACCTCGGCTGGCCGAATCCCGCCCTTATAAGC
tgtgaagacaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064697-exon-scaffold_421-1491911889:88297..88997 | TCONS_00064697-exon-scaffold_421-1491911889:88297..88997 | Clytia hemisphaerica | exon |
| TCONS_00064697-exon-scaffold_421-1510915933:88297..88997 | TCONS_00064697-exon-scaffold_421-1510915933:88297..88997 | Clytia hemisphaerica | exon |
| TCONS_00064697-exon-scaffold_421-1575043694:88297..88997 | TCONS_00064697-exon-scaffold_421-1575043694:88297..88997 | Clytia hemisphaerica | exon |
| TCONS_00064697-exon-scaffold_421-1491911889:90245..90292 | TCONS_00064697-exon-scaffold_421-1491911889:90245..90292 | Clytia hemisphaerica | exon |
| TCONS_00064697-exon-scaffold_421-1510915933:90245..90292 | TCONS_00064697-exon-scaffold_421-1510915933:90245..90292 | Clytia hemisphaerica | exon |
| TCONS_00064697-exon-scaffold_421-1575043694:90245..90292 | TCONS_00064697-exon-scaffold_421-1575043694:90245..90292 | Clytia hemisphaerica | exon |
| TCONS_00064697-exon-scaffold_421-1491911889:91614..91730 | TCONS_00064697-exon-scaffold_421-1491911889:91614..91730 | Clytia hemisphaerica | exon |
| TCONS_00064697-exon-scaffold_421-1510915933:91614..91730 | TCONS_00064697-exon-scaffold_421-1510915933:91614..91730 | Clytia hemisphaerica | exon |
| TCONS_00064697-exon-scaffold_421-1575043694:91614..91730 | TCONS_00064697-exon-scaffold_421-1575043694:91614..91730 | Clytia hemisphaerica | exon |
| TCONS_00064697-exon-scaffold_421-1491911889:92411..92569 | TCONS_00064697-exon-scaffold_421-1491911889:92411..92569 | Clytia hemisphaerica | exon |
| TCONS_00064697-exon-scaffold_421-1510915933:92411..92569 | TCONS_00064697-exon-scaffold_421-1510915933:92411..92569 | Clytia hemisphaerica | exon |
| TCONS_00064697-exon-scaffold_421-1575043694:92411..92569 | TCONS_00064697-exon-scaffold_421-1575043694:92411..92569 | Clytia hemisphaerica | exon |
| TCONS_00064697-exon-scaffold_421-1491911889:93384..93645 | TCONS_00064697-exon-scaffold_421-1491911889:93384..93645 | Clytia hemisphaerica | exon |
| TCONS_00064697-exon-scaffold_421-1510915933:93384..93645 | TCONS_00064697-exon-scaffold_421-1510915933:93384..93645 | Clytia hemisphaerica | exon |
| TCONS_00064697-exon-scaffold_421-1575043694:93384..93645 | TCONS_00064697-exon-scaffold_421-1575043694:93384..93645 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_421 | supercontig | scaffold_421:88297..93645 + |
Blast
The following BLAST results are available for this feature:
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