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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064696 ID=TCONS_00064696|Name=TCONS_00064696|organism=Clytia hemisphaerica|type=transcript|length=2133bp
AAAAAGGGAGCCTTGAAGTGAAGACCAATCACATTCACTATAGTTTACTT
CAAAAACCAGAGCGAAGCACGTCTAACCATTTCCAGGTCGCTTTCAAGAT
GAGATTTTGTTCATGGACAAATCTCTTTCTACTCGGAATCACGTGTCTTT
GTTTGACCAATGGGATGCCAAATAAACAACATGTTAGGAATAAGAAGAAT
TTGATAGATAACACCGTGAAAATGGCTGACCATGGAAAAACTTTGGTAAA
GAAATCAGCTCATCctatgaaaatcaaagatgtttcgaaaaaaagtaCTG
GTGGGGGATCAGATATAGCGAATTCCGATGACACTTTTGACCGGGCTGCT
GATGGTACGGATAATTCACTTTACGGAAGACAAGAAAAGGAACAAGGTAC
CGAAAACAGTGGAGTTGGTAAATTTGAGGGTCCACCTTGTCGTTGGGGAT
GTGGTAAAAGAGAGGCTGGTGTTGATGGAACCCCTGGTCGATGGAGTGGA
CGGAAAAGAGGAATGCGACGAGTAGGACCCCCTGGCCGTTNATATTGATG
GACCCCCTGGTCGGTGGGGTGGACGGAAGAGAGGAATGCGACGAGTAGGA
CCCCCTGGTCGTTGGGGTGGTCGTAAAAGAGGTGAATTACCGGGCCGTTG
GGGAGGCAAAAATCGAAGTGAACTACCGTTGGGGTGGTCGCAGAAAGAAG
GAAATCAAAGACCACCATCAAAGGAAACATGAAGAACACTTGACCAGGCA
AATGAAAACTATCCAAAAGAAAGAcgtttgatttgaaaaataaactttgt
aTCATTGCAATCAACCAAATAgtaatatttagaaaaaaatggcatttAGC
CTAAATATAGTGtatttttttagaattaaaatatgcaaaaatttaACACA
GCGTCAAATCAATCTGGATACAAAGCGTgtagttttttggtttttacatg
CTGTAATGATCATTATAGGTTGaggaaaagtcttttttataaggataatT
TCATAAGAGTaacgaggctcaaaatgccaaattataagaataatttaggA
ACAATCCTAAGCCTGGAATGGTTTTTGAACAAATTAACTGTCAAATTGGA
AAAGTTAAGGGGGTATTAGATTTGATAGAGCATGGTGCTCCCTTGTCATG
ACATTATTATTGTGGGATAGGAATTAAGCTGTGAAAATATTCTGTTCATT
CAAGACCCAGAAAGAAGCTTTGATAAAATTAaatgtaaaattctttaaaa
ggaCTACACTTGGAATTGCAATAGACTTGGCTAAAAACGAAAGTAGATAA
CCATCAAACTATGAAGGTACTACGTTACCGAGAGGATGGGTAGGCAAAAC
TTCAGAAATATCAACCTATATCATCAAATATTGGTCAAAATTAAGCCGAA
TTTAtcaaaattcggaattccagaggggtatgatcctaaaatttcctgga
attccaagggggtagttcacaaaaggttggagctcttcaacagggggtgt
acggtttttttctggaaaagcccatttcaagaatttatgaacCTTTGAGG
GATCAGTtcttaaattcttaattataacacccctgtttcacaaaCCCATT
GGGAACCCacccccactggaaaatttggcaataatttcgtccccggtgag
aAAATACCCTGGGATTTCGgccccacttggaaattgactttgagtTAATA
cacactcgaaattcaatgtttaaattGAATTCTCAAAACATCCCACTGGG
TTTTCTAACATTGGAACAATggaatttctatccctattgggatttcaata
gaaattttatctccactgaggaaaaaagttccatcggggctgtgagatag
gggtgtaTTATAAAACCCTAGAGACTAAATGATTACTTTTTATGGCTCGC
CAGACCCATCATGCATTTCATCTAAGTGCACCCTGGGTCCTAGTAAATTA
TCAGATTGAAAACTTCTtcataaagaaaataaactaaaaattacaaaact
tgAACATTTTAATAAAGATAAGGATTGATAAGTTAACATGAggataaata
tatttttcaaaatttgaaaatgaagttgtaaaaaaaattaaacgaaaagt
ttctttttgcggtatattgaaaagataaaaaat Run BLAST on NCBI transcript from alignment at scaffold_421:66184..69220+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064696 ID=TCONS_00064696|Name=TCONS_00064696|organism=Clytia hemisphaerica|type=transcript|length=3037bp|location=Sequence derived from alignment at scaffold_421:66184..69220+ (Clytia hemisphaerica)
AAAAAGGGAGCCTTGAAGTGAAGACCAATCACATTCACTATAGTTTACTT
CAAAAACCAGAGCGAAGCACGTCTAACCATTTCCAGGTATGTAAGTAGAT
TTAAATAATCTTCATTTGGTTATTTTACAACATACAGTGTGTCCAAAAAG
AAGTAGAGAAATTTttacataaaataaaatctttaaaactttatCTCGGG
CTTATGATAATTGTAAAAAGATTAGAATTCTGTGTTCAATTAATAGATAT
TCATATCCATTACCAAAGATAATTGAAAGGTTTTGGAGATTGAAATATTG
TGTACTTATATTGTATACTTTTGTATTGGATTTTACTTtgtataaaagtt
ttttttgggacaccctgtatttagTCGAACTATACCTTTGATAGCTTATT
AAATAGTTGAAGTCAATTGATGGGCACTCTAAGTTCTACGACTATTCAGA
CtttccaatttctttttcaatctcTAACGATTGAGCTTTTTATGGTCAAT
CAAGTCAAGGTCACTTAACCCTTCGGTCTTCCTATTTTTTAGTAGGGGAA
GCATCTTGGGGGGTCTTCCTAAGGCTTCCCTTAAAATCTCAAGACTGACA
AGTGCTATGACCTTGAAACTTTGACCTGTGGTAGATCATGgataatcaaa
aatgatttgcaaaattttagttCGGTCACCTGTCAGAACTTTTTGCTCCT
CCCAAGATGTTCGAAGGGTTAATAAATCTACCATTGGATTATTAATATTg
agtgagaaaaatatttccaggATCATCTCTGATCATGTTTGCTTTCGATT
GAATTTTTAGGTCGCTTTCAAGATGAGATTTTGTTCATGGACAAATCTCT
TTCTACTCGGAATCACGTGTCTTTGTTTGACCAATGGGATGCCAAATAAA
CAACATGTTAGGAATAAGAAGAATTTGATAGATAACACCGTGAAAATGGC
TGACCATGGAAAAACTTTGGTAAAGAAATCAGCTCATCctatgaaaatca
aagatgtttcgaaaaaaagtaCTGGTGGGGGATCAGATATAGCGAATTCC
GATGACACTTTTGACCGGGCTGCTGATGGTACGGATAATTCACTTTACGG
AAGACAAGAAAAGGAACAAGGTACCGAAAACAGTGGAGTTGGTAAATTTG
AGGGTCCACCTTGTCGTTGGGGATGTGGTAAAAGAGAGGCTGGTGTTGAT
GGAACCCCTGGTCGATGGAGTGGACGGAAAAGAGGAATGCGACGAGTAGG
ACCCCCTGGCCGTTNATATTGATGGACCCCCTGGTCGGTGGGGTGGACGG
AAGAGAGGAATGCGACGAGTAGGACCCCCTGGTCGTTGGGGTGGTCGTAA
AAGAGGTGAATTACCGGGTCGTTGGGGAGGCAAAAAGAGAGGTGAATTAC
CGGGCCGTTGGGGAGGCAAAAAGAGAAGTGAGTTACCAGGCCATTGGGGA
GGCAAAAAGCGAAGTGAATTACCAGGCCATTGGGGAGGTAAAAAGCGAAG
TGAAATACCGGGCCGTTGGGGAGGCAAAAAGCGAAGTGAAATACCGGGCC
GTTGGGGAGGCAAAAATCGAAGTGAACTACCGTTGGGGTGGTCGCAGAAA
GAAGGAAATCAAAGACCACCATCAAAGGAAACATGAAGAACACTTGACCA
GGCAAATGAAAACTATCCAAAAGAAAGAcgtttgatttgaaaaataaact
ttgtaTCATTGCAATCAACCAAATAgtaatatttagaaaaaaatggcatt
tAGCCTAAATATAGTGtatttttttagaattaaaatatgcaaaaatttaA
CACAGCGTCAAATCAATCTGGATACAAAGCGTgtagttttttggttttta
catgCTGTAATGATCATTATAGGTTGaggaaaagtcttttttataaggat
aatTTCATAAGAGTaacgaggctcaaaatgccaaattataagaataattt
aggAACAATCCTAAGCCTGGAATGGTTTTTGAACAAATTAACTGTCAAAT
TGGAAAAGTTAAGGGGGTATTAGATTTGATAGAGCATGGTGCTCCCTTGT
CATGACATTATTATTGTGGGATAGGAATTAAGCTGTGAAAATATTCTGTT
CATTCAAGACCCAGAAAGAAGCTTTGATAAAATTAaatgtaaaattcttt
aaaaggaCTACACTTGGAATTGCAATAGACTTGGCTAAAAACGAAAGTAG
ATAACCATCAAACTATGAAGGTACTACGTTACCGAGAGGATGGGTAGGCA
AAACTTCAGAAATATCAACCTATATCATCAAATATTGGTCAAAATTAAGC
CGAATTTAtcaaaattcggaattccagaggggtatgatcctaaaatttcc
tggaattccaagggggtagttcacaaaaggttggagctcttcaacagggg
gtgtacggtttttttctggaaaagcccatttcaagaatttatgaacCTTT
GAGGGATCAGTtcttaaattcttaattataacacccctgtttcacaaaCC
CATTGGGAACCCacccccactggaaaatttggcaataatttcgtccccgg
tgagaAAATACCCTGGGATTTCGgccccacttggaaattgactttgagtT
AATAcacactcgaaattcaatgtttaaattGAATTCTCAAAACATCCCAC
TGGGTTTTCTAACATTGGAACAATggaatttctatccctattgggatttc
aatagaaattttatctccactgaggaaaaaagttccatcggggctgtgag
ataggggtgtaTTATAAAACCCTAGAGACTAAATGATTACTTTTTATGGC
TCGCCAGACCCATCATGCATTTCATCTAAGTGCACCCTGGGTCCTAGTAA
ATTATCAGATTGAAAACTTCTtcataaagaaaataaactaaaaattacaa
aacttgAACATTTTAATAAAGATAAGGATTGATAAGTTAACATGAggata
aatatatttttcaaaatttgaaaatgaagttgtaaaaaaaattaaacgaa
aagtttctttttgcggtatattgaaaagataaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064696-exon-scaffold_421-1491911889:66184..66269 | TCONS_00064696-exon-scaffold_421-1491911889:66184..66269 | Clytia hemisphaerica | exon |
| TCONS_00064696-exon-scaffold_421-1510915933:66184..66269 | TCONS_00064696-exon-scaffold_421-1510915933:66184..66269 | Clytia hemisphaerica | exon |
| TCONS_00064696-exon-scaffold_421-1575043694:66184..66269 | TCONS_00064696-exon-scaffold_421-1575043694:66184..66269 | Clytia hemisphaerica | exon |
| TCONS_00064696-exon-scaffold_421-1491911889:66994..67538 | TCONS_00064696-exon-scaffold_421-1491911889:66994..67538 | Clytia hemisphaerica | exon |
| TCONS_00064696-exon-scaffold_421-1510915933:66994..67538 | TCONS_00064696-exon-scaffold_421-1510915933:66994..67538 | Clytia hemisphaerica | exon |
| TCONS_00064696-exon-scaffold_421-1575043694:66994..67538 | TCONS_00064696-exon-scaffold_421-1575043694:66994..67538 | Clytia hemisphaerica | exon |
| TCONS_00064696-exon-scaffold_421-1491911889:67575..67598 | TCONS_00064696-exon-scaffold_421-1491911889:67575..67598 | Clytia hemisphaerica | exon |
| TCONS_00064696-exon-scaffold_421-1510915933:67575..67598 | TCONS_00064696-exon-scaffold_421-1510915933:67575..67598 | Clytia hemisphaerica | exon |
| TCONS_00064696-exon-scaffold_421-1575043694:67575..67598 | TCONS_00064696-exon-scaffold_421-1575043694:67575..67598 | Clytia hemisphaerica | exon |
| TCONS_00064696-exon-scaffold_421-1491911889:67743..69220 | TCONS_00064696-exon-scaffold_421-1491911889:67743..69220 | Clytia hemisphaerica | exon |
| TCONS_00064696-exon-scaffold_421-1510915933:67743..69220 | TCONS_00064696-exon-scaffold_421-1510915933:67743..69220 | Clytia hemisphaerica | exon |
| TCONS_00064696-exon-scaffold_421-1575043694:67743..69220 | TCONS_00064696-exon-scaffold_421-1575043694:67743..69220 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_421 | supercontig | scaffold_421:66184..69220 + |
Blast
The following BLAST results are available for this feature:
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