TCONS_00064694 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064694
Unique NameTCONS_00064694
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2205

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064694 ID=TCONS_00064694|Name=TCONS_00064694|organism=Clytia hemisphaerica|type=transcript|length=2205bp
AAAAAGGGAGCCTTGAAGTGAAGACCAATCACATTCACTATAGTTTACTT
CAAAAACCAGAGCGAAGCACGTCTAACCATTTCCAGGTCGCTTTCAAGAT
GAGATTTTGTTCATGGACAAATCTCTTTCTACTCGGAATCACGTGTCTTT
GTTTGACCAATGGGATGCCAAATAAACAACATGTTAGGAATAAGAAGAAT
TTGATAGATAACACCGTGAAAATGGCTGACCATGGAAAAACTTTGGTAAA
GAAATCAGCTCATCctatgaaaatcaaagatgtttcgaaaaaaagtaCTG
GTGGGGGATCAGATATAGCGAATTCCGATGACACTTTTGACCGGGCTGCT
GATGGTACGGATAATTCACTTTACGGAAGACAAGAAAAGGAACAAGGTAC
CGAAAACAGTGGAGTTGGTAAATTTGAGGGTCCACCTTGTCGTTGGGGAT
GTGGTAAAAGAGAGGCTGGTGTTGATGGAACCCCTGGTCGATGGAGTGGA
CGGAAAAGAGGAATGCGACGAGTAGGACCCCCTGGCCGTTNATATTGATG
GACCCCCTGGTCGGTGGGGTGGACGGAAGAGAGGAATGCGACGAGTAGGA
CCCCCTGGTCGTTGGGGTGGTCGTAAAAGAGGTGAATTACCGGGCCGTTG
GGGAGGCAAAAAGCGAAGTGAATTACCAGGCCATTGGGGAGGCAAAAAGC
GAAGTGAAATACCGGGCCGTTGGGGAGGCAAAAATCGAAGTGAACTACCG
TTGGGGTGGTCGCAGAAAGAAGGAAATCAAAGACCACCATCAAAGGAAAC
ATGAAGAACACTTGACCAGGCAAATGAAAACTATCCAAAAGAAAGAcgtt
tgatttgaaaaataaactttgtaTCATTGCAATCAACCAAATAgtaatat
ttagaaaaaaatggcatttAGCCTAAATATAGTGtatttttttagaatta
aaatatgcaaaaatttaACACAGCGTCAAATCAATCTGGATACAAAGCGT
gtagttttttggtttttacatgCTGTAATGATCATTATAGGTTGaggaaa
agtcttttttataaggataatTTCATAAGAGTaacgaggctcaaaatgcc
aaattataagaataatttaggAACAATCCTAAGCCTGGAATGGTTTTTGA
ACAAATTAACTGTCAAATTGGAAAAGTTAAGGGGGTATTAGATTTGATAG
AGCATGGTGCTCCCTTGTCATGACATTATTATTGTGGGATAGGAATTAAG
CTGTGAAAATATTCTGTTCATTCAAGACCCAGAAAGAAGCTTTGATAAAA
TTAaatgtaaaattctttaaaaggaCTACACTTGGAATTGCAATAGACTT
GGCTAAAAACGAAAGTAGATAACCATCAAACTATGAAGGTACTACGTTAC
CGAGAGGATGGGTAGGCAAAACTTCAGAAATATCAACCTATATCATCAAA
TATTGGTCAAAATTAAGCCGAATTTAtcaaaattcggaattccagagggg
tatgatcctaaaatttcctggaattccaagggggtagttcacaaaaggtt
ggagctcttcaacagggggtgtacggtttttttctggaaaagcccatttc
aagaatttatgaacCTTTGAGGGATCAGTtcttaaattcttaattataac
acccctgtttcacaaaCCCATTGGGAACCCacccccactggaaaatttgg
caataatttcgtccccggtgagaAAATACCCTGGGATTTCGgccccactt
ggaaattgactttgagtTAATAcacactcgaaattcaatgtttaaattGA
ATTCTCAAAACATCCCACTGGGTTTTCTAACATTGGAACAATggaatttc
tatccctattgggatttcaatagaaattttatctccactgaggaaaaaag
ttccatcggggctgtgagataggggtgtaTTATAAAACCCTAGAGACTAA
ATGATTACTTTTTATGGCTCGCCAGACCCATCATGCATTTCATCTAAGTG
CACCCTGGGTCCTAGTAAATTATCAGATTGAAAACTTCTtcataaagaaa
ataaactaaaaattacaaaacttgAACATTTTAATAAAGATAAGGATTGA
TAAGTTAACATGAggataaatatatttttcaaaatttgaaaatgaagttg
taaaaaaaattaaacgaaaagtttctttttgcggtatattgaaaagataa
aaaat
Run BLAST on NCBI

protein sequence of pp7 precursor

>TCONS_00064694-protein ID=TCONS_00064694-protein|Name=pp7 precursor|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
KGSLEVKTNHIHYSLLQKPERSTSNHFQVAFKMRFCSWTNLFLLGITCLC
LTNGMPNKQHVRNKKNLIDNTVKMADHGKTLVKKSAHPMKIKDVSKKSTG
GGSDIANSDDTFDRAADGTDNSLYGRQEKEQGTENSGVGKFEGPPCRWGC
GKREAGVDGTPGRWSGRKRGMRRVGPPGRXY
Run BLAST on NCBI

transcript from alignment at scaffold_421:66184..69220+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064694 ID=TCONS_00064694|Name=TCONS_00064694|organism=Clytia hemisphaerica|type=transcript|length=3037bp|location=Sequence derived from alignment at scaffold_421:66184..69220+ (Clytia hemisphaerica)
AAAAAGGGAGCCTTGAAGTGAAGACCAATCACATTCACTATAGTTTACTT
CAAAAACCAGAGCGAAGCACGTCTAACCATTTCCAGGTATGTAAGTAGAT
TTAAATAATCTTCATTTGGTTATTTTACAACATACAGTGTGTCCAAAAAG
AAGTAGAGAAATTTttacataaaataaaatctttaaaactttatCTCGGG
CTTATGATAATTGTAAAAAGATTAGAATTCTGTGTTCAATTAATAGATAT
TCATATCCATTACCAAAGATAATTGAAAGGTTTTGGAGATTGAAATATTG
TGTACTTATATTGTATACTTTTGTATTGGATTTTACTTtgtataaaagtt
ttttttgggacaccctgtatttagTCGAACTATACCTTTGATAGCTTATT
AAATAGTTGAAGTCAATTGATGGGCACTCTAAGTTCTACGACTATTCAGA
CtttccaatttctttttcaatctcTAACGATTGAGCTTTTTATGGTCAAT
CAAGTCAAGGTCACTTAACCCTTCGGTCTTCCTATTTTTTAGTAGGGGAA
GCATCTTGGGGGGTCTTCCTAAGGCTTCCCTTAAAATCTCAAGACTGACA
AGTGCTATGACCTTGAAACTTTGACCTGTGGTAGATCATGgataatcaaa
aatgatttgcaaaattttagttCGGTCACCTGTCAGAACTTTTTGCTCCT
CCCAAGATGTTCGAAGGGTTAATAAATCTACCATTGGATTATTAATATTg
agtgagaaaaatatttccaggATCATCTCTGATCATGTTTGCTTTCGATT
GAATTTTTAGGTCGCTTTCAAGATGAGATTTTGTTCATGGACAAATCTCT
TTCTACTCGGAATCACGTGTCTTTGTTTGACCAATGGGATGCCAAATAAA
CAACATGTTAGGAATAAGAAGAATTTGATAGATAACACCGTGAAAATGGC
TGACCATGGAAAAACTTTGGTAAAGAAATCAGCTCATCctatgaaaatca
aagatgtttcgaaaaaaagtaCTGGTGGGGGATCAGATATAGCGAATTCC
GATGACACTTTTGACCGGGCTGCTGATGGTACGGATAATTCACTTTACGG
AAGACAAGAAAAGGAACAAGGTACCGAAAACAGTGGAGTTGGTAAATTTG
AGGGTCCACCTTGTCGTTGGGGATGTGGTAAAAGAGAGGCTGGTGTTGAT
GGAACCCCTGGTCGATGGAGTGGACGGAAAAGAGGAATGCGACGAGTAGG
ACCCCCTGGCCGTTNATATTGATGGACCCCCTGGTCGGTGGGGTGGACGG
AAGAGAGGAATGCGACGAGTAGGACCCCCTGGTCGTTGGGGTGGTCGTAA
AAGAGGTGAATTACCGGGTCGTTGGGGAGGCAAAAAGAGAGGTGAATTAC
CGGGCCGTTGGGGAGGCAAAAAGAGAAGTGAGTTACCAGGCCATTGGGGA
GGCAAAAAGCGAAGTGAATTACCAGGCCATTGGGGAGGTAAAAAGCGAAG
TGAAATACCGGGCCGTTGGGGAGGCAAAAAGCGAAGTGAAATACCGGGCC
GTTGGGGAGGCAAAAATCGAAGTGAACTACCGTTGGGGTGGTCGCAGAAA
GAAGGAAATCAAAGACCACCATCAAAGGAAACATGAAGAACACTTGACCA
GGCAAATGAAAACTATCCAAAAGAAAGAcgtttgatttgaaaaataaact
ttgtaTCATTGCAATCAACCAAATAgtaatatttagaaaaaaatggcatt
tAGCCTAAATATAGTGtatttttttagaattaaaatatgcaaaaatttaA
CACAGCGTCAAATCAATCTGGATACAAAGCGTgtagttttttggttttta
catgCTGTAATGATCATTATAGGTTGaggaaaagtcttttttataaggat
aatTTCATAAGAGTaacgaggctcaaaatgccaaattataagaataattt
aggAACAATCCTAAGCCTGGAATGGTTTTTGAACAAATTAACTGTCAAAT
TGGAAAAGTTAAGGGGGTATTAGATTTGATAGAGCATGGTGCTCCCTTGT
CATGACATTATTATTGTGGGATAGGAATTAAGCTGTGAAAATATTCTGTT
CATTCAAGACCCAGAAAGAAGCTTTGATAAAATTAaatgtaaaattcttt
aaaaggaCTACACTTGGAATTGCAATAGACTTGGCTAAAAACGAAAGTAG
ATAACCATCAAACTATGAAGGTACTACGTTACCGAGAGGATGGGTAGGCA
AAACTTCAGAAATATCAACCTATATCATCAAATATTGGTCAAAATTAAGC
CGAATTTAtcaaaattcggaattccagaggggtatgatcctaaaatttcc
tggaattccaagggggtagttcacaaaaggttggagctcttcaacagggg
gtgtacggtttttttctggaaaagcccatttcaagaatttatgaacCTTT
GAGGGATCAGTtcttaaattcttaattataacacccctgtttcacaaaCC
CATTGGGAACCCacccccactggaaaatttggcaataatttcgtccccgg
tgagaAAATACCCTGGGATTTCGgccccacttggaaattgactttgagtT
AATAcacactcgaaattcaatgtttaaattGAATTCTCAAAACATCCCAC
TGGGTTTTCTAACATTGGAACAATggaatttctatccctattgggatttc
aatagaaattttatctccactgaggaaaaaagttccatcggggctgtgag
ataggggtgtaTTATAAAACCCTAGAGACTAAATGATTACTTTTTATGGC
TCGCCAGACCCATCATGCATTTCATCTAAGTGCACCCTGGGTCCTAGTAA
ATTATCAGATTGAAAACTTCTtcataaagaaaataaactaaaaattacaa
aacttgAACATTTTAATAAAGATAAGGATTGATAAGTTAACATGAggata
aatatatttttcaaaatttgaaaatgaagttgtaaaaaaaattaaacgaa
aagtttctttttgcggtatattgaaaagataaaaaat

Coding sequence (CDS) from alignment at scaffold_421:66184..69220+

>TCONS_00064694 ID=TCONS_00064694|Name=TCONS_00064694|organism=Clytia hemisphaerica|type=CDS|length=1092bp|location=Sequence derived from alignment at scaffold_421:66184..69220+ (Clytia hemisphaerica)
AAAGGGAGCCTTGAAGTGAAGACCAATCACATTCACTATAGTTTACTTCA
AAAACCAGAGCGAAGCACGTCTAACCATTTCCAGGTCGCTTTCAAGATGA
GATTTTGTTCATGGACAAATCTCTTTCTACTCGGAATCACGTGTCTTTGT
TTGACCAATGGGATGCCAAATAAACAACATGTTAGGAATAAGAAGAATTT
GATAGATAACACCGTGAAAATGGCTGACCATGGAAAAACTTTGGTAAAGA
AATCAGCTCATCctatgaaaatcaaagatgtttcgaaaaaaagtaCTGGT
GGGGGATCAGATATAGCGAATTCCGATGACACTTTTGACCGGGCTGCTGA
TGGTACGGATAATTCACTTTACGGAAGACAAGAAAAGGAACAAGGTACCG
AAAACAGTGGAGTTGGTAAATTTGAGGGTCCACCTTGTCGTTGGGGATGT
GGTAAAAGAGAGGCTGGTGTTGATGGAACCCCTGGTCGATGGAGTGGACG
GAAAAGAGGAATGCGACGAGTAGGACCCCCTGGCCGTTNATATTGAAAAG
GGAGCCTTGAAGTGAAGACCAATCACATTCACTATAGTTTACTTCAAAAA
CCAGAGCGAAGCACGTCTAACCATTTCCAGGTCGCTTTCAAGATGAGATT
TTGTTCATGGACAAATCTCTTTCTACTCGGAATCACGTGTCTTTGTTTGA
CCAATGGGATGCCAAATAAACAACATGTTAGGAATAAGAAGAATTTGATA
GATAACACCGTGAAAATGGCTGACCATGGAAAAACTTTGGTAAAGAAATC
AGCTCATCctatgaaaatcaaagatgtttcgaaaaaaagtaCTGGTGGGG
GATCAGATATAGCGAATTCCGATGACACTTTTGACCGGGCTGCTGATGGT
ACGGATAATTCACTTTACGGAAGACAAGAAAAGGAACAAGGTACCGAAAA
CAGTGGAGTTGGTAAATTTGAGGGTCCACCTTGTCGTTGGGGATGTGGTA
AAAGAGAGGCTGGTGTTGATGGAACCCCTGGTCGATGGAGTGGACGGAAA
AGAGGAATGCGACGAGTAGGACCCCCTGGCCGTTNATATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040580XLOC_040580Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
pp7 precursorTCONS_00064694-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064694-exon-scaffold_421-1491911889:66184..66269TCONS_00064694-exon-scaffold_421-1491911889:66184..66269Clytia hemisphaericaexon
TCONS_00064694-exon-scaffold_421-1510915933:66184..66269TCONS_00064694-exon-scaffold_421-1510915933:66184..66269Clytia hemisphaericaexon
TCONS_00064694-exon-scaffold_421-1575043694:66184..66269TCONS_00064694-exon-scaffold_421-1575043694:66184..66269Clytia hemisphaericaexon
TCONS_00064694-exon-scaffold_421-1491911889:66994..67538TCONS_00064694-exon-scaffold_421-1491911889:66994..67538Clytia hemisphaericaexon
TCONS_00064694-exon-scaffold_421-1510915933:66994..67538TCONS_00064694-exon-scaffold_421-1510915933:66994..67538Clytia hemisphaericaexon
TCONS_00064694-exon-scaffold_421-1575043694:66994..67538TCONS_00064694-exon-scaffold_421-1575043694:66994..67538Clytia hemisphaericaexon
TCONS_00064694-exon-scaffold_421-1491911889:67575..67598TCONS_00064694-exon-scaffold_421-1491911889:67575..67598Clytia hemisphaericaexon
TCONS_00064694-exon-scaffold_421-1510915933:67575..67598TCONS_00064694-exon-scaffold_421-1510915933:67575..67598Clytia hemisphaericaexon
TCONS_00064694-exon-scaffold_421-1575043694:67575..67598TCONS_00064694-exon-scaffold_421-1575043694:67575..67598Clytia hemisphaericaexon
TCONS_00064694-exon-scaffold_421-1491911889:67635..67670TCONS_00064694-exon-scaffold_421-1491911889:67635..67670Clytia hemisphaericaexon
TCONS_00064694-exon-scaffold_421-1510915933:67635..67670TCONS_00064694-exon-scaffold_421-1510915933:67635..67670Clytia hemisphaericaexon
TCONS_00064694-exon-scaffold_421-1575043694:67635..67670TCONS_00064694-exon-scaffold_421-1575043694:67635..67670Clytia hemisphaericaexon
TCONS_00064694-exon-scaffold_421-1491911889:67707..69220TCONS_00064694-exon-scaffold_421-1491911889:67707..69220Clytia hemisphaericaexon
TCONS_00064694-exon-scaffold_421-1510915933:67707..69220TCONS_00064694-exon-scaffold_421-1510915933:67707..69220Clytia hemisphaericaexon
TCONS_00064694-exon-scaffold_421-1575043694:67707..69220TCONS_00064694-exon-scaffold_421-1575043694:67707..69220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_421supercontigscaffold_421:66184..69220 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.81079	2.0713	8.66453	8.71148	4.6348	5.31168	2.91987	2.03728	0	0	1.54533	0.9236	6.16929	8.31359	7.928	8.8899	1.10814	3.05419	4.02717	6.40893	0.170606	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064694 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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