TCONS_00064680 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064680
Unique NameTCONS_00064680
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length392

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064680 ID=TCONS_00064680|Name=TCONS_00064680|organism=Clytia hemisphaerica|type=transcript|length=392bp
ATCAAATTCAAATCATATTTTCCGCTATTGAATCCATAAACTGGTACTTG
ATTTACCCACTCATTCCAACGACTCCTAGCTTTTTTAGGTAACATCTTAA
AGGCGCTAGGACGAGGATAAATTTTTTCAACGTCCTCTACAATAGCTCCT
TGTTTCTGATATAAAACTTCCATAAATCGTCGCGTCAATTCTTTTGGATC
TGTATCTTCAAGATACACTGGTTCTTTACTCAAACTGTCGTGAATTGCAA
CGCTAACTGCTACTTGCTTCTGAATATAGGTTAAATCTTCTGTCGGTCGT
ATATTTTCAGGTAAAACTCGTGCTTCAAAATCATACATAATAAAATGTGG
ATAGGGAGTAAATTTCCACTCAAAAAACTTGTTACTCAACTC
Run BLAST on NCBI

protein sequence of TCONS_00064680-protein

>TCONS_00064680-protein ID=TCONS_00064680-protein|Name=TCONS_00064680-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
ELSNKFFEWKFTPYPHFIMYDFEARVLPENIRPTEDLTYIQKQVAVSVAI
HDSLSKEPVYLEDTDPKELTRRFMEVLYQKQGAIVEDVEKIYPRPSAFKM
LPKKARSRWNEWVNQVPVYGFNSGKYDLNL
Run BLAST on NCBI

transcript from alignment at scaffold_420:124604..124995

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064680 ID=TCONS_00064680|Name=TCONS_00064680|organism=Clytia hemisphaerica|type=transcript|length=392bp|location=Sequence derived from alignment at scaffold_420:124604..124995 (Clytia hemisphaerica)
GAGTTGAGTAACAAGTTTTTTGAGTGGAAATTTACTCCCTATCCACATTT
TATTATGTATGATTTTGAAGCACGAGTTTTACCTGAAAATATACGACCGA
CAGAAGATTTAACCTATATTCAGAAGCAAGTAGCAGTTAGCGTTGCAATT
CACGACAGTTTGAGTAAAGAACCAGTGTATCTTGAAGATACAGATCCAAA
AGAATTGACGCGACGATTTATGGAAGTTTTATATCAGAAACAAGGAGCTA
TTGTAGAGGACGTTGAAAAAATTTATCCTCGTCCTAGCGCCTTTAAGATG
TTACCTAAAAAAGCTAGGAGTCGTTGGAATGAGTGGGTAAATCAAGTACC
AGTTTATGGATTCAATAGCGGAAAATATGATTTGAATTTGAT

Coding sequence (CDS) from alignment at scaffold_420:124604..124995

>TCONS_00064680 ID=TCONS_00064680|Name=TCONS_00064680|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_420:124604..124995 (Clytia hemisphaerica)
GAGTTGAGTAACAAGTTTTTTGAGTGGAAATTTACTCCCTATCCACATTT
TATTATGTATGATTTTGAAGCACGAGTTTTACCTGAAAATATACGACCGA
CAGAAGATTTAACCTATATTCAGAAGCAAGTAGCAGTTAGCGTTGCAATT
CACGACAGTTTGAGTAAAGAACCAGTGTATCTTGAAGATACAGATCCAAA
AGAATTGACGCGACGATTTATGGAAGTTTTATATCAGAAACAAGGAGCTA
TTGTAGAGGACGTTGAAAAAATTTATCCTCGTCCTAGCGCCTTTAAGATG
TTACCTAAAAAAGCTAGGAGTCGTTGGAATGAGTGGGTAAATCAAGTACC
AGTTTATGGATTCAATAGCGGAAAATATGATTTGAATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040568XLOC_040568Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064680-exon-scaffold_420-1491911889:124604..124995TCONS_00064680-exon-scaffold_420-1491911889:124604..124995Clytia hemisphaericaexon
TCONS_00064680-exon-scaffold_420-1510915933:124604..124995TCONS_00064680-exon-scaffold_420-1510915933:124604..124995Clytia hemisphaericaexon
TCONS_00064680-exon-scaffold_420-1575043694:124604..124995TCONS_00064680-exon-scaffold_420-1575043694:124604..124995Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064680-proteinTCONS_00064680-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_420supercontigscaffold_420:124604..124995 .
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064680 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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