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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064679 ID=TCONS_00064679|Name=TCONS_00064679|organism=Clytia hemisphaerica|type=transcript|length=2706bp
cgtggcccatgaatcgtgtcgatatatgacgcacgggccaccgggtggcc
catagcAAAAAAGGCGATTTCCGCCCTTTTCCACCAGTTTCTGGGGTGTT
GTGGGTTTGAATTAtgatttttagataaaaatccGTTCGTGTCCTTCAAA
CGGTTTGTTTTTATCATGCTTTGACAAAAAGTTATGAAATttgaaagtta
tcaaaaaaatggCTGCAGCAaagaaaaacgtaaagaaaGTTTACACAGAT
ATCGACGAAATTCTTGATGTTGTTTTTGAAAGTGACAACTCAGATATTGA
TCTAGGTGATGAAAGTAATAGTGACAGTGACTGGGAGTATGATGGAGATG
ATCAAGTTgaagaaaatgaccaaaatctTCCTGTTGAAGACCCTCCCAAC
GTCGACCAAGCTGACAACAGCCCCGACAGTGAGGAAGAGATGGACATAGA
TGATAATGAAATAAATGACTCTATTCCAGAAGAAACAGACGAATCTGTTG
TTGAATCTGATTCTGGTAGTGAAGATGATGAACCCCTTGCAAGATTTGCC
CAACGTAATTTACCGAACAACCGTGTACAAGCCATAAGAGGACGTGCTAA
TCGTGGCCGTGGTCGTGGTCCAGGACGTGGAATCCAGAGAGGAGCTGGAC
GTGTCAGAGGTGGCCGGAGATTTTCTTTAGAAGGAAATGAAAACCCGAAC
TTAGTTGAGCGTGGTAGAGGGAGGGCGCAGGGCCAACGTCGTGGACGTGC
GCGTGGTTTTAGAAGAAGAGGACGTGGTTGTGGAAGAGGAGTGCGCGGTA
GACAACAAGCTCGTGGTGTTGATAATGCGGATCAACCTGCTGACGATATC
GAAGACCCGGAAGGAGACCTTGATTGGACCAATATAGAACTTGATCAAGA
AGTGACAGAGAATGATGACtttctatttttggaaaatgagGGACTCAACG
TTCGTTTAGACCCGAACAGTAGTGAACTTGATTTTTTGGAACTTTATTTG
ACTGACAAATTCTACAACGAAATTGTCAGAGAAACAAACCGGTTCGCTGC
CCAATTTATTGAATCCAATCCTGATAAAGAGGAAAGTCGTTATGTTGGTT
CTTGGTCTGATGTTACCAAGGAAGAAATAAAAGCATTTCTTGCACTCATA
ATCATGATGGGCATAGTTCACAAGCCTGACGTCAACTCGTACTGGTCGTT
AGACGAGCTATTATCGACACCTTCCTTTTCTACAATTATGAATCGCGACC
GGttcaaattaattttaaaatttctccATTTCAATGATAACAGTACCTAT
GATCCTCAAGACCCTGATCGTGATCGTCTTCATAAAGTGAGACCTATCCT
GGACATTCTGCGGAATCGATTTAGAACTGTATATAACCCAGGAAAAACCT
TAGCGTTGACGAATCGCTCGTCTTGTTCAAAGGCCGACTCCATTTCCGCC
AATACATCAAGACCAAACGGGCTCGCTTTGGCATCAAGTTATACGAATTG
ACAACGGGTGACGGCATTACACTTGATGTCTTGGTTTATTGCGGCAAGGG
AATGTACTATTCTGAAGACAATGAATACGAAAGTATGGCCACCACGGAAC
GGATACCTGCAGAGCTCATGCGCCCATTTTTGAATCGTGAGCATGTCTTA
TATACAGACAACTTCTACACCTCACCTAGCCTTGCAAAGTTTCTGTTGAA
CAATGAAACTTACCTTTGTGGTACAATAAAGAACAATCGAAAGTCGTATT
GTAAGGCAATAAAGGGAGTTGCGTTGCAGAAAGGCCAGGCAACTTTCTTC
GAAGGAAAGTTCAAAACTGCTGAAGTTGATCCTAATGATGAGAACCCTGT
TATTGACGAGAACGCTGATGTACCTCCACAAAAGCTTTTAGCATGTAAAT
TTAGAGCTTTACAGGACAAAGCAAACAAAAAGCCTAAGATTGTTTACATG
CTTTCTTCATTACACAACGCGTCAATGGTAGATACCGGTAAAACCGATAA
GGATGGTACCCAAATCATCAAACCCGCAATGATAACTGCCTACAACCATC
ATATGGGTGGTGTCGATAGAGTCGATCAACAACTACATTCAGTTCAAGCT
TTGCGCAAAACGTACAAGTGGTACAAAAAGCTTGCCATTCGTCTAATTCT
TCAAGCCGCCTTGAACGCTCATAAGATCTTTATCAAGGTCACGCCTAACG
AAAAAGATcagaaaatttctttcattgatTTCCTTCTTCGCTGCATCAAA
CAAATGGTCACCAACCCGATGGAGCCAGTTTTACCTAGGAATGATGACAT
ATCCAGATTGACTGGTAGACATTTCAGTGCTTTGATTCCAGCCACAGGTC
AAAGCAGCGTGTGCTACAAAAGGAACATAAAAACCCCGAAAGGCGGTGAC
GTCACAACCATCTACCACTGTGAGGACTGCCCGTCTCTACCTGGTTTACA
TCCAGGAGAATGTTTCAAGGCCTATCACAAATTGGAAGACTATTCTAAAC
AATAGAAACCTTGAAATCCAAACAGACAGTAGTACATttagtttatattt
ttatttttgacccACATTGAAATTTTACCGCTTTTCTTCTGTTTTACTTG
AGCTCACTTTTCTGAAGACCCAAGCGAGCTTTtgagctgaaatttttttt
gtttgctcAGAAATACGTTTGTCTACATTATATATAAGTTTCAAAGCTAT
AGCTTG Run BLAST on NCBI protein sequence of TCONS_00064679-protein >TCONS_00064679-protein ID=TCONS_00064679-protein|Name=TCONS_00064679-protein|organism=Clytia hemisphaerica|type=polypeptide|length=430bp
MAAAKKNVKKVYTDIDEILDVVFESDNSDIDLGDESNSDSDWEYDGDDQV
EENDQNLPVEDPPNVDQADNSPDSEEEMDIDDNEINDSIPEETDESVVES
DSGSEDDEPLARFAQRNLPNNRVQAIRGRANRGRGRGPGRGIQRGAGRVR
GGRRFSLEGNENPNLVERGRGRAQGQRRGRARGFRRRGRGCGRGVRGRQQ
ARGVDNADQPADDIEDPEGDLDWTNIELDQEVTENDDFLFLENEGLNVRL
DPNSSELDFLELYLTDKFYNEIVRETNRFAAQFIESNPDKEESRYVGSWS
DVTKEEIKAFLALIIMMGIVHKPDVNSYWSLDELLSTPSFSTIMNRDRFK
LILKFLHFNDNSTYDPQDPDRDRLHKVRPILDILRNRFRTVYNPGKTLAL
TNRSSCSKADSISANTSRPNGLALASSYTN Run BLAST on NCBI transcript from alignment at scaffold_420:99767..102472 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064679 ID=TCONS_00064679|Name=TCONS_00064679|organism=Clytia hemisphaerica|type=transcript|length=2706bp|location=Sequence derived from alignment at scaffold_420:99767..102472 (Clytia hemisphaerica)
CAAGCTATAGCTTTGAAACTTATATATAATGTAGACAAACGTATTTCTga
gcaaacaaaaaaaatttcagctcaAAAGCTCGCTTGGGTCTTCAGAAAAG
TGAGCTCAAGTAAAACAGAAGAAAAGCGGTAAAATTTCAATGTgggtcaa
aaataaaaatataaactaaATGTACTACTGTCTGTTTGGATTTCAAGGTT
TCTATTGTTTAGAATAGTCTTCCAATTTGTGATAGGCCTTGAAACATTCT
CCTGGATGTAAACCAGGTAGAGACGGGCAGTCCTCACAGTGGTAGATGGT
TGTGACGTCACCGCCTTTCGGGGTTTTTATGTTCCTTTTGTAGCACACGC
TGCTTTGACCTGTGGCTGGAATCAAAGCACTGAAATGTCTACCAGTCAAT
CTGGATATGTCATCATTCCTAGGTAAAACTGGCTCCATCGGGTTGGTGAC
CATTTGTTTGATGCAGCGAAGAAGGAAatcaatgaaagaaattttctgAT
CTTTTTCGTTAGGCGTGACCTTGATAAAGATCTTATGAGCGTTCAAGGCG
GCTTGAAGAATTAGACGAATGGCAAGCTTTTTGTACCACTTGTACGTTTT
GCGCAAAGCTTGAACTGAATGTAGTTGTTGATCGACTCTATCGACACCAC
CCATATGATGGTTGTAGGCAGTTATCATTGCGGGTTTGATGATTTGGGTA
CCATCCTTATCGGTTTTACCGGTATCTACCATTGACGCGTTGTGTAATGA
AGAAAGCATGTAAACAATCTTAGGCTTTTTGTTTGCTTTGTCCTGTAAAG
CTCTAAATTTACATGCTAAAAGCTTTTGTGGAGGTACATCAGCGTTCTCG
TCAATAACAGGGTTCTCATCATTAGGATCAACTTCAGCAGTTTTGAACTT
TCCTTCGAAGAAAGTTGCCTGGCCTTTCTGCAACGCAACTCCCTTTATTG
CCTTACAATACGACTTTCGATTGTTCTTTATTGTACCACAAAGGTAAGTT
TCATTGTTCAACAGAAACTTTGCAAGGCTAGGTGAGGTGTAGAAGTTGTC
TGTATATAAGACATGCTCACGATTCAAAAATGGGCGCATGAGCTCTGCAG
GTATCCGTTCCGTGGTGGCCATACTTTCGTATTCATTGTCTTCAGAATAG
TACATTCCCTTGCCGCAATAAACCAAGACATCAAGTGTAATGCCGTCACC
CGTTGTCAATTCGTATAACTTGATGCCAAAGCGAGCCCGTTTGGTCTTGA
TGTATTGGCGGAAATGGAGTCGGCCTTTGAACAAGACGAGCGATTCGTCA
ACGCTAAGGTTTTTCCTGGGTTATATACAGTTCTAAATCGATTCCGCAGA
ATGTCCAGGATAGGTCTCACTTTATGAAGACGATCACGATCAGGGTCTTG
AGGATCATAGGTACTGTTATCATTGAAATggagaaattttaaaattaatt
tgaaCCGGTCGCGATTCATAATTGTAGAAAAGGAAGGTGTCGATAATAGC
TCGTCTAACGACCAGTACGAGTTGACGTCAGGCTTGTGAACTATGCCCAT
CATGATTATGAGTGCAAGAAATGCTTTTATTTCTTCCTTGGTAACATCAG
ACCAAGAACCAACATAACGACTTTCCTCTTTATCAGGATTGGATTCAATA
AATTGGGCAGCGAACCGGTTTGTTTCTCTGACAATTTCGTTGTAGAATTT
GTCAGTCAAATAAAGTTCCAAAAAATCAAGTTCACTACTGTTCGGGTCTA
AACGAACGTTGAGTCCctcattttccaaaaatagaaaGTCATCATTCTCT
GTCACTTCTTGATCAAGTTCTATATTGGTCCAATCAAGGTCTCCTTCCGG
GTCTTCGATATCGTCAGCAGGTTGATCCGCATTATCAACACCACGAGCTT
GTTGTCTACCGCGCACTCCTCTTCCACAACCACGTCCTCTTCTTCTAAAA
CCACGCGCACGTCCACGACGTTGGCCCTGCGCCCTCCCTCTACCACGCTC
AACTAAGTTCGGGTTTTCATTTCCTTCTAAAGAAAATCTCCGGCCACCTC
TGACACGTCCAGCTCCTCTCTGGATTCCACGTCCTGGACCACGACCACGG
CCACGATTAGCACGTCCTCTTATGGCTTGTACACGGTTGTTCGGTAAATT
ACGTTGGGCAAATCTTGCAAGGGGTTCATCATCTTCACTACCAGAATCAG
ATTCAACAACAGATTCGTCTGTTTCTTCTGGAATAGAGTCATTTATTTCA
TTATCATCTATGTCCATCTCTTCCTCACTGTCGGGGCTGTTGTCAGCTTG
GTCGACGTTGGGAGGGTCTTCAACAGGAagattttggtcattttcttcAA
CTTGATCATCTCCATCATACTCCCAGTCACTGTCACTATTACTTTCATCA
CCTAGATCAATATCTGAGTTGTCACTTTCAAAAACAACATCAAGAATTTC
GTCGATATCTGTGTAAACtttctttacgtttttcttTGCTGCAGccattt
ttttgataactttcaaATTTCATAACTTTTTGTCAAAGCATGATAAAAAC
AAACCGTTTGAAGGACACGAACggatttttatctaaaaatcaTAATTCAA
ACCCACAACACCCCAGAAACTGGTGGAAAAGGGCGGAAATCGCCTTTTTT
gctatgggccacccggtggcccgtgcgtcatatatcgacacgattcatgg
gccacg Coding sequence (CDS) from alignment at scaffold_420:99767..102472 >TCONS_00064679 ID=TCONS_00064679|Name=TCONS_00064679|organism=Clytia hemisphaerica|type=CDS|length=1293bp|location=Sequence derived from alignment at scaffold_420:99767..102472 (Clytia hemisphaerica)
TCAATTCGTATAACTTGATGCCAAAGCGAGCCCGTTTGGTCTTGATGTAT
TGGCGGAAATGGAGTCGGCCTTTGAACAAGACGAGCGATTCGTCAACGCT
AAGGTTTTTCCTGGGTTATATACAGTTCTAAATCGATTCCGCAGAATGTC
CAGGATAGGTCTCACTTTATGAAGACGATCACGATCAGGGTCTTGAGGAT
CATAGGTACTGTTATCATTGAAATggagaaattttaaaattaatttgaaC
CGGTCGCGATTCATAATTGTAGAAAAGGAAGGTGTCGATAATAGCTCGTC
TAACGACCAGTACGAGTTGACGTCAGGCTTGTGAACTATGCCCATCATGA
TTATGAGTGCAAGAAATGCTTTTATTTCTTCCTTGGTAACATCAGACCAA
GAACCAACATAACGACTTTCCTCTTTATCAGGATTGGATTCAATAAATTG
GGCAGCGAACCGGTTTGTTTCTCTGACAATTTCGTTGTAGAATTTGTCAG
TCAAATAAAGTTCCAAAAAATCAAGTTCACTACTGTTCGGGTCTAAACGA
ACGTTGAGTCCctcattttccaaaaatagaaaGTCATCATTCTCTGTCAC
TTCTTGATCAAGTTCTATATTGGTCCAATCAAGGTCTCCTTCCGGGTCTT
CGATATCGTCAGCAGGTTGATCCGCATTATCAACACCACGAGCTTGTTGT
CTACCGCGCACTCCTCTTCCACAACCACGTCCTCTTCTTCTAAAACCACG
CGCACGTCCACGACGTTGGCCCTGCGCCCTCCCTCTACCACGCTCAACTA
AGTTCGGGTTTTCATTTCCTTCTAAAGAAAATCTCCGGCCACCTCTGACA
CGTCCAGCTCCTCTCTGGATTCCACGTCCTGGACCACGACCACGGCCACG
ATTAGCACGTCCTCTTATGGCTTGTACACGGTTGTTCGGTAAATTACGTT
GGGCAAATCTTGCAAGGGGTTCATCATCTTCACTACCAGAATCAGATTCA
ACAACAGATTCGTCTGTTTCTTCTGGAATAGAGTCATTTATTTCATTATC
ATCTATGTCCATCTCTTCCTCACTGTCGGGGCTGTTGTCAGCTTGGTCGA
CGTTGGGAGGGTCTTCAACAGGAagattttggtcattttcttcAACTTGA
TCATCTCCATCATACTCCCAGTCACTGTCACTATTACTTTCATCACCTAG
ATCAATATCTGAGTTGTCACTTTCAAAAACAACATCAAGAATTTCGTCGA
TATCTGTGTAAACtttctttacgtttttcttTGCTGCAGccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00064679-exon-scaffold_420-1491911889:99767..102472 | TCONS_00064679-exon-scaffold_420-1491911889:99767..102472 | Clytia hemisphaerica | exon |
| TCONS_00064679-exon-scaffold_420-1510915933:99767..102472 | TCONS_00064679-exon-scaffold_420-1510915933:99767..102472 | Clytia hemisphaerica | exon |
| TCONS_00064679-exon-scaffold_420-1575043694:99767..102472 | TCONS_00064679-exon-scaffold_420-1575043694:99767..102472 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_420 | supercontig | scaffold_420:99767..102472 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR029526 | PGBD |
Blast
BLAST of TCONS_00064679 vs. Swiss-Prot (Human)
Match: PGBD4 (PiggyBac transposable element-derived protein 4 OS=Homo sapiens GN=PGBD4 PE=2 SV=3) HSP 1 Score: 151.369 bits (381), Expect = 2.765e-62 Identity = 121/386 (31.35%), Postives = 183/386 (47.41%), Query Frame = 1
Query: 1387 PRKNLSVDESLVLFKGRLHFRQYIKTKRARFGIKLYEL-TTGDGITLDVLVYCGKGMYYSEDNEYESMATTERIPAELMRPFLNREHVLYTDNFYTSPSLAKFLLNNETYLCGTIKNNRKSYCKAIKGVALQKGQATFFEGKFKTAEVDPNDENPVIDENADVPPQKLLACKFRALQDKANKKPKIVYMLSSLHNASMVDTGKTDKDGTQIIKPAMITAYNHHMGGVDRVDQQLHSVQALRKTYK-WYKKLAIRLILQAALNAHKIFIKVTPNEKDQKISFIDFLLRCIKQMVTNPMEP------VLPRNDDIS--RLTGRHFSALIPA-------TGQSSVCYKRNIKTPKGGDVTTIYHCEDCPSLPGLHPGECFKAYHKLEDY 2493
P +N++VDESL+LFKG L +QY+ TKR RFG+KLY L + G + LV+ G GM + + + RI L+ L + + ++ DNF SP L + L N T GT + NRK +K + F G+ L+A K+ K V MLS+ HN ++++ +++G + +P +I YN +MG VD DQ L S + RK +K WYKK L+ LN++ +F K P + +S I+F L I++M+ +P P +DD++ RL+GRHF IPA TG+ +C + K K T Y C +C + P CF+ YH ++Y
Sbjct: 243 PNRNIAVDESLMLFKGPLAMKQYLPTKRVRFGLKLYVLCESQSGYVWNALVHTGPGMNLKDSAD---GLKSSRIVLTLVNDLLGQGYCVFLDNFNISPMLFRELHQNRTDAVGTARLNRKQIPNDLKKRIAKGTTVARFCGE-------------------------LMALKW--------CDGKEVTMLSTFHNDTVIEVN--NRNGKKTKRPRVIVDYNENMGAVDSADQMLTSYPSERKRHKVWYKKFFHHLLHITVLNSYILFKKDNP---EHTMSHINFRLALIERMLEKHHKPGQQHLRGRPCSDDVTPLRLSGRHFPKSIPATSGKQNPTGRCKICCSQYDKDGKKIRKETRYFCAECDVPLCVVP--CFEIYHTKKNY 585 HSP 2 Score: 107.842 bits (268), Expect = 2.765e-62 Identity = 55/162 (33.95%), Postives = 87/162 (53.70%), Query Frame = 2
Query: 926 FLENEGLNVRLDPNSSELDFLELYLTDKFYNEIVRETNRFAAQFIESNPDKEESRYVGSWSDVTKEEIKAFLALIIMMGIVHKPDVNSYWSLDELLSTPSFSTIMNRDRFKLILKFLHFNDNSTYDP-QDPDRDRLHKVRPILDILRNRFRTVYNPGKTLAL 1408
F G V + + L + EL+ T++ ++I RETN AA P + + W D +E+K F A++++ GIV KP++ +WS LL TP IM +RF L+ + LHF +NS+ Q + L K++P+ D L N+F TVY P + +A+
Sbjct: 88 FTGTPGRKVDVSDITDPLQYFELFFTEELVSKITRETNAQAALLASKPPGPKGFSRMDKWKDTDNDELKVFFAVMLLQGIVQKPELEMFWSTRPLLDTPYLRQIMTGERFLLLFRCLHFVNNSSISAGQSKAQISLQKIKPVFDFLVNKFSTVYTPNRNIAV 249
The following BLAST results are available for this feature:
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