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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064639 ID=TCONS_00064639|Name=TCONS_00064639|organism=Clytia hemisphaerica|type=transcript|length=2104bp
CGAAAACGAAATGACACGTTTACTTGTTAGAGAAGTgacttgtgtgttga
ataaagTTTCAACTTTACGGCACGCCTTGAAAAACTTGTGATCAATCTtt
agaaagttttttgaaatgtaTTATGAAAACTATACCAGCCTTCAAACATT
GAGaTCTTGAATCTGGACCAACACCAAAGAAATAACACGTACTCGAAACA
AGTATCATGCTGAAAATTGTCGAAAATGTTTCCATATCTATACCAATGAT
GGTACACTGAAATTCATATAACATTGTATCAATTTGACCGAACTTTAAAG
AATCATATGGTACTTGGTATTGTAATGAACGCAGCTAAATTTACATGTTC
CGaaacaattatattcaaatttttgtgcGTGGAGGACCGGTAGTTGATCA
AGATATAATCTCTTCAAACGAATTTTTGTGAAACGAGATTTTTGTGAATA
TTTGACGGCTTTGCTGCTCCACGAATAAAACAGTAAAAGGCTCCTGTCAA
AGTGCTATAATGATGTTATCTAAGTGGAGCAGTGTTGAGTGGCAGTCAGA
TCGTCGAACAAAAAGGAACGAAACTATAAAACGAAAATCGATACCGAAAA
CCGAACATAAAGATAAAGATAGTGGGAAAGACTTGTGGCATGTGGTATCC
CTTTAACTTTGTTTGGATTTTATTATGTTTGGAATTTTTCTCGTGTTCAT
TATTTATATATGAGGTTTGGTATTTCGCAATTATTTCGGCTGTGTGGTtt
aagatgttcttttaaaactttatcAATGATATTAGTGGCAGCGTTCTCTT
TTCATTATGGTCATCATGGGTCTTATTTTCTCATACTTTTTACGAACTAa
tatcattgaaaaaatttcaaaaagttttaggAAGATCGAAACGTGTAGAT
TCTGGATTTAAAACTGACAGTAGAATTTAATGTAAAGCCTGCATAATGAT
ATTCAAAGATCGTTGGATTTGCTCAGATATTACATTAACACAAAAATTAA
ACTTAATTAGAGTGGAACTAGAGTCAATCTAAAAATTTACATGAAACGCA
ACTTTTGGCACGACTAAAATCTATGTTAATTGGTTTGAATTATTGGCATG
ATGTTTTTTATTCGTGTTTttctgtttgttgttgttggtgTTCATGAAGT
GAATTTCAACCGTACTGTAAAGCGCTAATCGATCCTTTTTGTTCATTTGC
TAAGAATGCTTTGTTATACTATGTTAACCGAATGTGTGTATTTCGAATCT
AAAGGGATGAAATTTTGCCGAATTGTATGTTCGTTGGTATTGTACATTTT
AAGGTGAACGAGTGGTTGCTGCAAAACACTTTGAACCGTCTCAAGATTTC
TTAATATGTCTTTGGTAATTACTTGCGTTGTGAACCCTCCAATTTGTTtt
ttgatacacgttttttataagagaatgtttttcaactttttttgagttta
tagcctACATGTTTTGAACATGTtcatattttcaccattttgtgagtaat
tttgcccattttcctaagaaatcgagaGTTTAGTGcacaaagcctcaaaa
tgttcttaacttcttaacattttggccaatAAAGTCTTAtgttttatata
gtttgttcttaaaaaagtgtatttgaagattttttgcgCCTTTGGTCAAA
ATCAATAGTTTTCGGACGGTTttatcaaatttctcaaaaaccacATTCTC
CATTTGGATTTCGTTGACATCCTTATGTGATTCCGTTGGTGTCGATTCTT
GATGTGTCGTTCGTCGCTCGAACGCTCTGACCAAGTTCCTTGCTCTGACT
GAATTATTAAACAATCATTGTGTTTTTACACCGATTTTTGGAAACCCAAG
TTTTTCACTGTATTCTGTATACATGTCGTGCTGGTATGGTAGTCTGTCTT
GTGCGAGGAGAGCTTAAAGGAGTGGTCTTTAAGAAAGACCGTTTGTTGTT
ACTAGCAACATGCACGTGAATAAACATAAACCAGACCAGATCGGACAGAG
AATTTCGAGACGTAATAAATCTATCATTACAAAAAtatgtttaaattcaa
aaatagaGCCACAAAATTGCAAATTACAAAAAGCGATAGCTAATTTTAGA
CGAG Run BLAST on NCBI transcript from alignment at scaffold_420:31655..36754+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064639 ID=TCONS_00064639|Name=TCONS_00064639|organism=Clytia hemisphaerica|type=transcript|length=5100bp|location=Sequence derived from alignment at scaffold_420:31655..36754+ (Clytia hemisphaerica)
CGAAAACGAAATGACACGTTTACTTGTTAGAGAAGTgacttgtgtgttga
ataaagTTTCAACTTTACGGCACGCCTTGAAAAACTTGTGATCAATCTtt
agaaagttttttgaaatgtaTTATGAAAACTATACCAGCCTTCAAACATT
GAGGTAAGAACATGATTGAAAAAGCTCTGCTTTATTCACTACTTACTTTT
AGGAGATTTTTTGTTCTGggattggaaagatattttcagatagAAATATT
TCTGTTTTGATGCTACTGAAATTATGATGAAAGATTTTGTGATATTTTGA
GTGATATCTTGGGATCTAGCTACACCTATCAACAAATACGTAAggtaatt
ttctcaaatatgtAAACGTTGTAGAACTAAactctttttctttattattt
tagaTCTTGAATCTGGACCAACACCAAAGAAATAACACGTACTCGAAACA
AGTATCATGCTGAAAATTGTCGAAAATGTTTCCATATCTATACCAATGAT
GGTACACTGAAATTCATATAACATTGTATCAATTTGACCGAACTTTAAAG
AATCATATGGTACTTGGTATTGTAATGAACGCAGCTAAATTTACATGTTC
CGaaacaattatattcaaatttttgtgcGTGGAGGACCGGTAGTTGATCA
AGATATAATCTCTTCAAACGAATTTTTGTGAAACGAGATTTTTGTGAATA
TTTGACGGCTTTGCTGCTCCACGAATAAAACAGTAAAAGGTACGTTCGAT
TTTTTACGACttctgattttgatttttcttgatgAAACTTAGAAtatact
tgaaaaaattcttctgGGCCAgattacacgtcttttttttataaggaaca
cgtttataaggaactcgaggctgaaaatggttcaaaaaataaggaatttt
taAGGAACTGcccaggctgagaataagtggatttgaaaataatgtacgtt
attgggactaatttgaccaaattttgatctttcaaggggcaaaaagttNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNggcaaaaagttcaaattttcctatgtagtaaggaact
cgataaggaactttgagactgaaattctctgtaaaaataaggaacaccag
gctcagagcaaagttaaggttccttataaaaaaaagacgtgtattctcaa
aaaaaagtaaagacgaaaaacaaaattttgttcatccTTGACGTTTCGAT
ACTTCTTATGTAAATTTTATGACCTATAATTGCCAGATgtgattttgaaa
ttgatttatTAACACGTTTTTGCTTGTAAGCTAACATTTGCTTGTGATCA
TGATACAAGAAGTATCGAAACGTCAAGGATgaaccaaaatttgtttttcg
tctttactttttttttagaatatacTCTCTCAAACTTGGGTTCTTTTGGT
TAGAAACTTAGATTTTTGATCTGAAACTTGGCGATGATTTTTGTGACCGG
CTTTGATGTTCTTACTCTAAGTCTGAACTATAAGCGATTTATATCTTTGG
GTTTGGTAACTTTTTCTGTCTTTTgtcaaaaaagttggtatttttccgtt
tgaatttttgattttatcagaACTGCATgttgttttttcaatttctttac
gaatattttaactttcgtgtccgatttttcttttcaaagctCGGTATTAT
CGCTTCTATTTCACTCTCAATTCGATAGATTCTGTTTTTTTCTGTTCGAT
TTTTATCTTGTCAGAGAGagtttgatatttttatctGTTCCAGTTTGATG
GTtagtttttgttcaaatttgcttttttctcaatttcttccGAGATTGAT
GTCATAATTTTTAAGGTCGATGGGTTTTTGTTTAAGTGTTTTACTGTCTT
GATCAAATGTTTTTGTAGAGTTTGATGATTTTTCTACCGAATCTTTTTTC
TGTGTTCTGTATTTTTACTTTGACTTGGATGGTTTTTGTCCCACTTTGGG
TGGCTTTATCTATGGTCCGAATTTGATAATTGATTtcttcgatttcgatt
ttttctgTCAGTTGGATAAGCACCGAATGAACTTAGCTCATTTTTGATCG
ATTTATCCTATTGTGATgccttttttttcgaaatttgattGTTCAGTCCC
AAAtaagtttttcttgatttttcttgtccatttttttcttgtcaattttc
caaataagaatttttttgctttagcTCCTGACCATTTCTTTCAGAGTCAG
GTTTTCTTTTTCTGTAGATTTTAGTTTTCCGAATTTTGTGCTTTTTTCTG
TCCGAGCTCGTTCAttgaattttaagattttgttttCCATGTTGACcttt
ccaaaattgaaatttttccaaGATTTCTCGGGTAACtaaatgcatgtccc
agaattgcattattTTTTCCGCCCCAATTCTAGCCCCTAAACcgctaaac
cataacaaactaaaCATTTCGAAGcatatttggatgtagaataccgtatt
cagTGTAACTTGATTATTTCCTCAGCAGAattagagtttttttaagaaaa
cgtgattatgacgtcattatttatgacgtcataattttaaaaagttgaat
atctcgagaaatataaatcaaaactttatgaaattcgGAACAGTGATAAA
AGATattgagatatttcaaaaaaatttgaaagtatttccgaaaattaatg
acgtcagcagaaattgcaagaattccaatttttgcgataaaatgccGTCA
TAAATGACATCatatagcaaattttcaaattttttgaaaataattctcct
cttgatgaatttgtCTCATCATTGTCCATCTANaattttttgaaaaaaat
tctcctcttgatgaatttgtCTCATCATTGTCCATCTATCATTGGTCtaa
tcaggttttcttaagatattcTAATCatactgagaaaaaaattaagttac
accgaaAACAGTATTCTACATCCAGCCAAATACGTtcccaaaaatgtata
gtttgttatggtttagggactgggacggaaaattaatgcaattccgGGAC
ATTCATTAAGTTACCCCAATTTTCCAAGATTGAAATTTTTCCAAGATTGA
AATTTTTCCAAGATTGAAATTTTCCAAGATTGAAATTTTCCAAGATTGAA
TTTTTTCCAAGATTGAATTTTTTCCAAGATTGAATTTTTTCCAAGATTGA
ATTTTTTCCATGATTGAATTTTTTCCAAGATTGAATTTTTTCCAAGATTG
AATTTTTTCCAAgattgatttttttccaagattgaatttttttccaagat
tgaatttttttccaagattgaatttttttccaagattgaatttttttcca
agattgaatttttttccaagattcaccaagattttaaatatttttaaatg
tttagAAATTATGtattgttttaagaaaatttttgtgtaaaccattttag
ttttttctaaatcatttttttatcttttgattcaGGCTCCTGTCAAAGTG
CTATAATGATGTTATCTAAGTGGAGCAGTGTTGAGTGGCAGTCAGATCGT
CGAACAAAAAGGAACGAAACTATAAAACGAAAATCGATACCGAAAACCGA
ACATAAAGATAAAGATAGTGGGAAAGACTTGTGGCATGTGGTATCCCTTT
AACTTTGTTTGGATTTTATTATGTTTGGAATTTTTCTCGTGTTCATTATT
TATATATGAGGTTTGGTATTTCGCAATTATTTCGGCTGTGTGGTttaaga
tgttcttttaaaactttatcAATGATATTAGTGGCAGCGTTCTCTTTTCA
TTATGGTCATCATGGGTCTTATTTTCTCATACTTTTTACGAACTAatatc
attgaaaaaatttcaaaaagttttaggAAGATCGAAACGTGTAGATTCTG
GATTTAAAACTGACAGTAGAATTTAATGTAAAGCCTGCATAATGATATTC
AAAGATCGTTGGATTTGCTCAGATATTACATTAACACAAAAATTAAACTT
AATTAGAGTGGAACTAGAGTCAATCTAAAAATTTACATGAAACGCAACTT
TTGGCACGACTAAAATCTATGTTAATTGGTTTGAATTATTGGCATGATGT
TTTTTATTCGTGTTTttctgtttgttgttgttggtgTTCATGAAGTGAAT
TTCAACCGTACTGTAAAGCGCTAATCGATCCTTTTTGTTCATTTGCTAAG
AATGCTTTGTTATACTATGTTAACCGAATGTGTGTATTTCGAATCTAAAG
GGATGAAATTTTGCCGAATTGTATGTTCGTTGGTATTGTACATTTTAAGG
TGAACGAGTGGTTGCTGCAAAACACTTTGAACCGTCTCAAGATTTCTTAA
TATGTCTTTGGTAATTACTTGCGTTGTGAACCCTCCAATTTGTTttttga
tacacgttttttataagagaatgtttttcaactttttttgagtttatagc
ctACATGTTTTGAACATGTtcatattttcaccattttgtgagtaattttg
cccattttcctaagaaatcgagaGTTTAGTGcacaaagcctcaaaatgtt
cttaacttcttaacattttggccaatAAAGTCTTAtgttttatatagttt
gttcttaaaaaagtgtatttgaagattttttgcgCCTTTGGTCAAAATCA
ATAGTTTTCGGACGGTTttatcaaatttctcaaaaaccacATTCTCCATT
TGGATTTCGTTGACATCCTTATGTGATTCCGTTGGTGTCGATTCTTGATG
TGTCGTTCGTCGCTCGAACGCTCTGACCAAGTTCCTTGCTCTGACTGAAT
TATTAAACAATCATTGTGTTTTTACACCGATTTTTGGAAACCCAAGTTTT
TCACTGTATTCTGTATACATGTCGTGCTGGTATGGTAGTCTGTCTTGTGC
GAGGAGAGCTTAAAGGAGTGGTCTTTAAGAAAGACCGTTTGTTGTTACTA
GCAACATGCACGTGAATAAACATAAACCAGACCAGATCGGACAGAGAATT
TCGAGACGTAATAAATCTATCATTACAAAAAtatgtttaaattcaaaaat
agaGCCACAAAATTGCAAATTACAAAAAGCGATAGCTAATTTTAGACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064639-exon-scaffold_420-1491911889:31655..31807 | TCONS_00064639-exon-scaffold_420-1491911889:31655..31807 | Clytia hemisphaerica | exon |
| TCONS_00064639-exon-scaffold_420-1510915933:31655..31807 | TCONS_00064639-exon-scaffold_420-1510915933:31655..31807 | Clytia hemisphaerica | exon |
| TCONS_00064639-exon-scaffold_420-1575043694:31655..31807 | TCONS_00064639-exon-scaffold_420-1575043694:31655..31807 | Clytia hemisphaerica | exon |
| TCONS_00064639-exon-scaffold_420-1491911889:32058..32393 | TCONS_00064639-exon-scaffold_420-1491911889:32058..32393 | Clytia hemisphaerica | exon |
| TCONS_00064639-exon-scaffold_420-1510915933:32058..32393 | TCONS_00064639-exon-scaffold_420-1510915933:32058..32393 | Clytia hemisphaerica | exon |
| TCONS_00064639-exon-scaffold_420-1575043694:32058..32393 | TCONS_00064639-exon-scaffold_420-1575043694:32058..32393 | Clytia hemisphaerica | exon |
| TCONS_00064639-exon-scaffold_420-1491911889:35140..36754 | TCONS_00064639-exon-scaffold_420-1491911889:35140..36754 | Clytia hemisphaerica | exon |
| TCONS_00064639-exon-scaffold_420-1510915933:35140..36754 | TCONS_00064639-exon-scaffold_420-1510915933:35140..36754 | Clytia hemisphaerica | exon |
| TCONS_00064639-exon-scaffold_420-1575043694:35140..36754 | TCONS_00064639-exon-scaffold_420-1575043694:35140..36754 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_420 | supercontig | scaffold_420:31655..36754 + |
Blast
The following BLAST results are available for this feature:
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