TCONS_00064622 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064622
Unique NameTCONS_00064622
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length870

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064622 ID=TCONS_00064622|Name=TCONS_00064622|organism=Clytia hemisphaerica|type=transcript|length=870bp
CCAATAGTTGttttgaaagttcatattttgAATCTGGTATAGGTCTACTC
ATAAAACCCAAGCGTAAAAAAAATCTGTCGGATGGACGCTCAAATATTGG
GAAAAGATAAAGATTTTCCTTTGGTAATCACAAATTAAAACGCATTCTTA
TGATAAACCGTAGCATGAAGAATATATATAAGGTGCAACatcaaatttga
ataactttaacttttttttatcatattaTCATGTTCGATTTGTCCATCCG
acagatttttgaaataataaaagtTTGAGAGGAAAGGTGTTCTGTTATTT
AGTAGTTTTAAATAATTGAAATCTATCGAATTTGAGATCGCCTTAACAAA
TAAAAACGGGTGCAGTAGCTATAACTTGCACCATTTATTTACAAATTGCA
TCTTAAATTTTGTCCGTCCGACAGAAATATAGTCCTAAAACTTCAACTTA
AATATAGCTGTCACCTTCTTTGTTAAATTACGACACGCTGCTGGCTTGTT
GTTTTAATTGGAGTCAATACCTCACTGCACTGTATTATGAATCTAGAACA
GCTAAAGATTTATCGTGACCCTTTTCCTCGCCTTaggaaaaaagtaaaag
tcCATCCGACAGATTTATCTCACTGCAAATAAGCATGCTATTTTTGGTAT
TTATCTATCACTTTCAGATAGCAAATGACAAGTATATGGCAACTGAAGTA
TTACGCCGTGATTTATTCGAAAAAGTTGGCTATCCAATATATTTTTATCT
CAATGTGTAGAGGGCTTTAACATCAAATGGGAAagtcaatcgaatgcaaa
acaTTCGATCAAGCCAatgcaaaacattcgaattttaaatcgaatgtttt
tttactttcgaatgttttct
Run BLAST on NCBI

transcript from alignment at scaffold_419:445637..446506

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064622 ID=TCONS_00064622|Name=TCONS_00064622|organism=Clytia hemisphaerica|type=transcript|length=870bp|location=Sequence derived from alignment at scaffold_419:445637..446506 (Clytia hemisphaerica)
agaaaacattcgaaagtaaaaaaacattcgatttaaaattcgaatgtttt
gcatTGGCTTGATCGAAtgttttgcattcgattgactTTCCCATTTGATG
TTAAAGCCCTCTACACATTGAGATAAAAATATATTGGATAGCCAACTTTT
TCGAATAAATCACGGCGTAATACTTCAGTTGCCATATACTTGTCATTTGC
TATCTGAAAGTGATAGATAAATACCAAAAATAGCATGCTTATTTGCAGTG
AGATAAATCTGTCGGATGgacttttacttttttcctAAGGCGAGGAAAAG
GGTCACGATAAATCTTTAGCTGTTCTAGATTCATAATACAGTGCAGTGAG
GTATTGACTCCAATTAAAACAACAAGCCAGCAGCGTGTCGTAATTTAACA
AAGAAGGTGACAGCTATATTTAAGTTGAAGTTTTAGGACTATATTTCTGT
CGGACGGACAAAATTTAAGATGCAATTTGTAAATAAATGGTGCAAGTTAT
AGCTACTGCACCCGTTTTTATTTGTTAAGGCGATCTCAAATTCGATAGAT
TTCAATTATTTAAAACTACTAAATAACAGAACACCTTTCCTCTCAAactt
ttattatttcaaaaatctgtCGGATGGACAAATCGAACATGAtaatatga
taaaaaaaagttaaagttattcaaatttgatGTTGCACCTTATATATATT
CTTCATGCTACGGTTTATCATAAGAATGCGTTTTAATTTGTGATTACCAA
AGGAAAATCTTTATCTTTTCCCAATATTTGAGCGTCCATCCGACAGATTT
TTTTTACGCTTGGGTTTTATGAGTAGACCTATACCAGATTcaaaatatga
actttcaaaaCAACTATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040531XLOC_040531Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064622-exon-scaffold_419-1491911889:445637..446506TCONS_00064622-exon-scaffold_419-1491911889:445637..446506Clytia hemisphaericaexon
TCONS_00064622-exon-scaffold_419-1510915933:445637..446506TCONS_00064622-exon-scaffold_419-1510915933:445637..446506Clytia hemisphaericaexon
TCONS_00064622-exon-scaffold_419-1575043694:445637..446506TCONS_00064622-exon-scaffold_419-1575043694:445637..446506Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:445637..446506 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.536728	0.628074	0.303856	0.654006	0.144762	0.343178	0.621044	0.969023	0.180916	0.0560235	0.0543778	0.321712	0.356961	0.296566	0.54859	0.457894	1.32964	0.289086	0.399388	0.179113	1.34924	1.29091	0.492322	0.447592	0.230505	0.46287	0.588769	0.942525	1.42974	0.667646
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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