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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064599 ID=TCONS_00064599|Name=TCONS_00064599|organism=Clytia hemisphaerica|type=transcript|length=1051bp
CAACTTCGGAACAGAGAAATAGAGCTATTTACGCTACTGCGAGAAACAAG
GTTACAGGAAAGATcagacgagaaagaagaagactaGAAGAACGAATTTG
TAGTCAAGCAAAAAGAAGCCCTAAGAAGTTTTGGAAGCATATCCGGAACT
CAATGAAGACCAAAACGGGAATTTCCCCTCTTCTCTTTGATCCAAATGAT
AAATCATCACTTCGTTTTACTGATGAGGATAAAGCTGACATCCTACAGTA
TcagttttgcagtgtttttacgAATGAACCTGCTGGATCACTAGCTGAGT
TTCCATCACGAACAGACACAGATGTAGCATTCGATCTAACAATCGACATG
ATCAAAAAGgaactgaaagatttgaatcTAATAAATCGCTAGGACCTGAT
GAGATTCACCCAGTCATGCTGAAAAAGCTGGCCTTTTACATAGCCGGTCC
TTTACATACTATAATGGCCAAGTCCTTCGTAGAAAGTAAACTACCTGATG
ATTGGAAGACTGCACATGTGTCCCCGATCTACAAGAAAGGAAAAAAGAAT
CTTGCAGAAAATTACAGGCCCGTTAGTTTAACATCAGTTGCGTGTAGAGT
AATGGAAAGAATcctaaagaaacaaataatGGAACACCTCACGAATGAGA
AATTGCTATCAACCAAACAACATGGGTTCATGGGTAAGCGATCGACAGTG
ACACAAATGACAAATGTGCAGACTCGATATCCAATGATAAGGTTGTTGAC
GTAATCTATTTCGACTTCGCAAAGGCATTTGACACCGTTCCGCATCGCAG
ATTACTAAGAAAACTCGAAGCGTATGGTATCAGAAGAAGGGTACTTGGTT
GGATGAAAGCATTTTTGTCCGATCGTTACCAATATGTGAAGGTCAATGGA
AAGTTATCTAAGAAATGCCAGGTGCAAAGTGGTGTACNGTACTTGGTTGG
ATGAAAGCATTTTTGTCCGATCGTTACCAATATGTGAAGGTCAATGGAAA
GTTATCTGAGAAATGCCAGGTGCAAAGTGGTGTACCACAAGGAAGTGTCT
T Run BLAST on NCBI protein sequence of TCONS_00064599-protein >TCONS_00064599-protein ID=TCONS_00064599-protein|Name=TCONS_00064599-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
TSEQRNRAIYATARNKVTGKIRRERRRLEERICSQAKRSPKKFWKHIRNS
MKTKTGISPLLFDPNDKSSLRFTDEDKADILQYQFCSVFTNEPAGSLAEF
PSRTDTDVAFDLTIDMIKKELKDLNLINR Run BLAST on NCBI transcript from alignment at scaffold_419:28530..29580 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064599 ID=TCONS_00064599|Name=TCONS_00064599|organism=Clytia hemisphaerica|type=transcript|length=1051bp|location=Sequence derived from alignment at scaffold_419:28530..29580 (Clytia hemisphaerica)
AAGACACTTCCTTGTGGTACACCACTTTGCACCTGGCATTTCTCAGATAA
CTTTCCATTGACCTTCACATATTGGTAACGATCGGACAAAAATGCTTTCA
TCCAACCAAGTACNGTACACCACTTTGCACCTGGCATTTCTTAGATAACT
TTCCATTGACCTTCACATATTGGTAACGATCGGACAAAAATGCTTTCATC
CAACCAAGTACCCTTCTTCTGATACCATACGCTTCGAGTTTTCTTAGTAA
TCTGCGATGCGGAACGGTGTCAAATGCCTTTGCGAAGTCGAAATAGATTA
CGTCAACAACCTTATCATTGGATATCGAGTCTGCACATTTGTCATTTGTG
TCACTGTCGATCGCTTACCCATGAACCCATGTTGTTTGGTTGATAGCAAT
TTCTCATTCGTGAGGTGTTCCattatttgtttctttaggATTCTTTCCAT
TACTCTACACGCAACTGATGTTAAACTAACGGGCCTGTAATTTTCTGCAA
GATTCTTTTTTCCTTTCTTGTAGATCGGGGACACATGTGCAGTCTTCCAA
TCATCAGGTAGTTTACTTTCTACGAAGGACTTGGCCATTATAGTATGTAA
AGGACCGGCTATGTAAAAGGCCAGCTTTTTCAGCATGACTGGGTGAATCT
CATCAGGTCCTAGCGATTTATTAgattcaaatctttcagttcCTTTTTGA
TCATGTCGATTGTTAGATCGAATGCTACATCTGTGTCTGTTCGTGATGGA
AACTCAGCTAGTGATCCAGCAGGTTCATTcgtaaaaacactgcaaaactg
ATACTGTAGGATGTCAGCTTTATCCTCATCAGTAAAACGAAGTGATGATT
TATCATTTGGATCAAAGAGAAGAGGGGAAATTCCCGTTTTGGTCTTCATT
GAGTTCCGGATATGCTTCCAAAACTTCTTAGGGCTTCTTTTTGCTTGACT
ACAAATTCGTTCTTCtagtcttcttctttctcgtctgATCTTTCCTGTAA
CCTTGTTTCTCGCAGTAGCGTAAATAGCTCTATTTCTCTGTTCCGAAGTT
G Coding sequence (CDS) from alignment at scaffold_419:28530..29580 >TCONS_00064599 ID=TCONS_00064599|Name=TCONS_00064599|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_419:28530..29580 (Clytia hemisphaerica)
CTAGCGATTTATTAgattcaaatctttcagttcCTTTTTGATCATGTCGA
TTGTTAGATCGAATGCTACATCTGTGTCTGTTCGTGATGGAAACTCAGCT
AGTGATCCAGCAGGTTCATTcgtaaaaacactgcaaaactgATACTGTAG
GATGTCAGCTTTATCCTCATCAGTAAAACGAAGTGATGATTTATCATTTG
GATCAAAGAGAAGAGGGGAAATTCCCGTTTTGGTCTTCATTGAGTTCCGG
ATATGCTTCCAAAACTTCTTAGGGCTTCTTTTTGCTTGACTACAAATTCG
TTCTTCtagtcttcttctttctcgtctgATCTTTCCTGTAACCTTGTTTC
TCGCAGTAGCGTAAATAGCTCTATTTCTCTGTTCCGAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064599-exon-scaffold_419-1491911889:28530..29580 | TCONS_00064599-exon-scaffold_419-1491911889:28530..29580 | Clytia hemisphaerica | exon |
| TCONS_00064599-exon-scaffold_419-1510915933:28530..29580 | TCONS_00064599-exon-scaffold_419-1510915933:28530..29580 | Clytia hemisphaerica | exon |
| TCONS_00064599-exon-scaffold_419-1575043694:28530..29580 | TCONS_00064599-exon-scaffold_419-1575043694:28530..29580 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_419 | supercontig | scaffold_419:28530..29580 . |
Blast
The following BLAST results are available for this feature:
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