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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064594 ID=TCONS_00064594|Name=TCONS_00064594|organism=Clytia hemisphaerica|type=transcript|length=2322bpRun BLAST on NCBI protein sequence of TCONS_00064594-protein >TCONS_00064594-protein ID=TCONS_00064594-protein|Name=TCONS_00064594-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp MAAQLRTKKGKSKPTLLNRLELNGDIIFAAVFIPHEDSIITLGADKSIRVRun BLAST on NCBI transcript from alignment at scaffold_419:527225..539919- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064594 ID=TCONS_00064594|Name=TCONS_00064594|organism=Clytia hemisphaerica|type=transcript|length=12695bp|location=Sequence derived from alignment at scaffold_419:527225..539919- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_419:527225..539919- >TCONS_00064594 ID=TCONS_00064594|Name=TCONS_00064594|organism=Clytia hemisphaerica|type=CDS|length=13365bp|location=Sequence derived from alignment at scaffold_419:527225..539919- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064594 vs. Swiss-Prot (Human)
Match: WDFY2 (WD repeat and FYVE domain-containing protein 2 OS=Homo sapiens GN=WDFY2 PE=1 SV=2) HSP 1 Score: 414.461 bits (1064), Expect = 6.143e-137 Identity = 182/398 (45.73%), Postives = 272/398 (68.34%), Query Frame = 3
Query: 192 QLRTKKGKSKPTLLNRLELNGDIIFAAVFIPHEDSIITLGADKSIRVWVMRDNGKYWPSVFHHMPDVGHSLDFNKESGKVFVGMAQGTIHEYDLSDDVNTLTLARNYLAHTKRVNGTFFSLDYNWLLSCGNDKQFQWHCTKSGRRIGGYSAAKAPCTCLQFDSHSCYAFMGDRGGEIHVFKLSENSLKPVTILKGHSGGILSLTWDEERKLLFSGSADQSIIIWDIGGQKGSAVELHGHRGCVHNVSLTSNTKKLLSYGEDRMLVMWDMTVERKETPNWSQSDMCEKCASPFFWNFKQMWDQKIVGVRQHHCRKCGRAVCQKCSNKMSVLPKFGYEHEVRLCQECFLTIKEEDKVSTTGFYELKHGASHLQIDHSRGRMLTCGSDDVVMIWDVKEFLN 1385
+++ K KP LL R+E + +++ AV +P E+ +I++ D+++RVW+ RD+G+YWPSV+H MP + FN E+ ++ +G+ GTI E+ LS+D N +T +NY AH RV F L+ W+LS G DKQF WHC++SG+R+GGY + A + LQFD + + F+GD G++ + KL + + VT +GH+GG+ +L WD +++LFSGS+D S+I+WDIGG+KG+A+EL GH V +S +T++L+S G D +V+W+M VER+ETP W SD C+KC PFFWNFKQMWD K +G+RQHHCRKCG+AVC KCS+K S +P G+E EVR+C C I +E++ T F++ KH H+ D +RG +LT G+D V+ +WD+ ++
Sbjct: 4 EIQPKPLTRKPILLQRMEGSQEVVNMAVIVPKEEGVISVSEDRTVRVWLKRDSGQYWPSVYHAMPSPCSCMSFNPETRRLSIGLDNGTISEFILSEDYNKMTPVKNYQAHQSRVTMILFVLELEWVLSTGQDKQFAWHCSESGQRLGGYRTS-AVASGLQFDVETRHVFIGDHSGQVTILKLEQENCTLVTTFRGHTGGVTALCWDPVQRVLFSGSSDHSVIMWDIGGRKGTAIELQGHNDRVQALSYAQHTRQLISCGGDGGIVVWNMDVERQETPEWLDSDSCQKCDQPFFWNFKQMWDSKKIGLRQHHCRKCGKAVCGKCSSKRSSIPLMGFEFEVRVCDSCHEAITDEERAPTATFHDSKHNIVHVHFDATRGWLLTSGTDKVIKLWDMTPVVS 400 The following BLAST results are available for this feature:
BLAST of TCONS_00064594 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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