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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064580 ID=TCONS_00064580|Name=TCONS_00064580|organism=Clytia hemisphaerica|type=transcript|length=307bp
aaaaacaaaaattctcgATCCCGATACGTTCGACAAATATCTTGACATAG
GAGTAGATTTCCTTGGGGATTTTGTAAAACAGCTGGCAAATGGTATGTTT
AGAATGTTTTGCGGCAATTTAGCGACGAAActctttgaaaaagaagaagc
agAGTGGTGGAATGGCTTCTTCAAAAATGTTATGCCAACCAACTCGTATA
ATAAAGCAGTCGAATTCGTGAAGAACTCTATAACGAACGAGTCGAGGAAA
GAGCTTATGAAGAGATTCCCTGAGGATAAGGTCGAGAAATTGATCGAAGA
ATGGCTT Run BLAST on NCBI protein sequence of TCONS_00064580-protein >TCONS_00064580-protein ID=TCONS_00064580-protein|Name=TCONS_00064580-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
KTKILDPDTFDKYLDIGVDFLGDFVKQLANGMFRMFCGNLATKLFEKEEA
EWWNGFFKNVMPTNSYNKAVEFVKNSITNESRKELMKRFPEDKVEKLIEE
WL Run BLAST on NCBI transcript from alignment at scaffold_419:405916..407124- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064580 ID=TCONS_00064580|Name=TCONS_00064580|organism=Clytia hemisphaerica|type=transcript|length=1209bp|location=Sequence derived from alignment at scaffold_419:405916..407124- (Clytia hemisphaerica)
AAAAACAAAAATTCTCGATCCCGATACGTTCGACAAATATCTTGACATAG
GAGTAGATTTCCTTGGGGTAAGAAAATATCTACTATTTTTGTCTGTCTGG
TTATCCAACGATTTGAAAATAATTTCTGCGGTCATTTCAGACCAAGAGGG
TATGTCACGTTGTTTACCAAAAACCAATTTATAATATCGATTAAGGGCTA
TGACCCTCGAAAAGTTGATTTTGTTATTTGAACATAACATTTATAGGTTC
CTTACAGTTTTAACAAATAATTGCCTATTAATCAAATCCCTTAAGAGTAA
TTAAGAATTTAATTGCAAAAATGACGTTATGAACTTTAAAAAGACATCGT
TTTCGTCTTCGTTAATTTTTTTCATTATGTTTCCTAAATTCTCAGACTCA
AGGATAGTCGGCCTAACAGAAAATAACATGCCAAAGCTACATCATGCAGA
CATTTATATTTTGTACGTGGCAAATATTAGAAACTATGGTCAGAGCCCTT
AAGGTGGACCAAAAGGACCTTGACTCTAATTGTGGGTGACTTTTTTCTCT
GAATGGCATTTAGACCTTTTAACAATTGATGCATAGTTTGAATGTAAAAG
TTAAGGTTTTCACTGGTTCTTTTTTTATTCTTTTCATACTATCACAGGAT
TTTGTAAAACAGCTGGCAAATGGTATGTTTAGAATGTTTTGCGGCAATTT
AGCGACGAAACTCTTTGAAAAAGAAGAAGCAGAGTGGTGGAATGGCTTCT
TCAAAAATGTTATGCCAACCAACTCGGTATGTTCTATTTTTTTTCGACTC
ATTCTTTATGCCGAAGAGATCCTGAATACTGAAAAATTCTTGAAACTGTA
AAATATCTCAAGCAAAAATTATCAGATGAATTTATTACAACTAACCAATT
CATAAGGTTTGTATAAAATTGCTGGTTTTAGTTTCATTAATTTATAATCT
TTATTTTAGTATAATAAAGCAGTCGAATTCGTGAAGAACTCTATTACGAA
CGAGTCGAGGAAAGAGCTTNTTATTACAACTAACCAATTCATAAGGTTTG
TATAAAATTGCTGATTTTAGTTTCATTAATTTATAATCTTTATTTTAGTA
TAATAAAGCAGTCGAATTCGTGAAGAACTCTATAACGAACGAGTCGAGGA
AAGAGCTTATGAAGAGATTCCCTGAGGATAAGGTCGAGAAATTGATCGAA
GAATGGCTT Coding sequence (CDS) from alignment at scaffold_419:405916..407124- >TCONS_00064580 ID=TCONS_00064580|Name=TCONS_00064580|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_419:405916..407124- (Clytia hemisphaerica)
TATAATAAAGCAGTCGAATTCGTGAAGAACTCTATAACGAACGAGTCGAG
GAAAGAGCTTATGAAGAGATTCCCTGAGGATAAGGTCGAGAAATTGATCG
AAGAATGGCTTGATTTTGTAAAACAGCTGGCAAATGGTATGTTTAGAATG
TTTTGCGGCAATTTAGCGACGAAACTCTTTGAAAAAGAAGAAGCAGAGTG
GTGGAATGGCTTCTTCAAAAATGTTATGCCAACCAACTCGAAAACAAAAA
TTCTCGATCCCGATACGTTCGACAAATATCTTGACATAGGAGTAGATTTC
CTTGGGTATAATAAAGCAGTCGAATTCGTGAAGAACTCTATAACGAACGA
GTCGAGGAAAGAGCTTATGAAGAGATTCCCTGAGGATAAGGTCGAGAAAT
TGATCGAAGAATGGCTTGATTTTGTAAAACAGCTGGCAAATGGTATGTTT
AGAATGTTTTGCGGCAATTTAGCGACGAAACTCTTTGAAAAAGAAGAAGC
AGAGTGGTGGAATGGCTTCTTCAAAAATGTTATGCCAACCAACTCGAAAA
CAAAAATTCTCGATCCCGATACGTTCGACAAATATCTTGACATAGGAGTA
GATTTCCTTGGGTATAATAAAGCAGTCGAATTCGTGAAGAACTCTATAAC
GAACGAGTCGAGGAAAGAGCTTATGAAGAGATTCCCTGAGGATAAGGTCG
AGAAATTGATCGAAGAATGGCTTGATTTTGTAAAACAGCTGGCAAATGGT
ATGTTTAGAATGTTTTGCGGCAATTTAGCGACGAAACTCTTTGAAAAAGA
AGAAGCAGAGTGGTGGAATGGCTTCTTCAAAAATGTTATGCCAACCAACT
CGAAAACAAAAATTCTCGATCCCGATACGTTCGACAAATATCTTGACATA
GGAGTAGATTTCCTTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064580-exon-scaffold_419-1575043694:407058..407124 | TCONS_00064580-exon-scaffold_419-1575043694:407058..407124 | Clytia hemisphaerica | exon |
| TCONS_00064580-exon-scaffold_419-1575043694:406349..406477 | TCONS_00064580-exon-scaffold_419-1575043694:406349..406477 | Clytia hemisphaerica | exon |
| TCONS_00064580-exon-scaffold_419-1575043694:405916..406026 | TCONS_00064580-exon-scaffold_419-1575043694:405916..406026 | Clytia hemisphaerica | exon |
| TCONS_00064580-exon-scaffold_419-1510915933:407058..407124 | TCONS_00064580-exon-scaffold_419-1510915933:407058..407124 | Clytia hemisphaerica | exon |
| TCONS_00064580-exon-scaffold_419-1510915933:406349..406477 | TCONS_00064580-exon-scaffold_419-1510915933:406349..406477 | Clytia hemisphaerica | exon |
| TCONS_00064580-exon-scaffold_419-1510915933:405916..406026 | TCONS_00064580-exon-scaffold_419-1510915933:405916..406026 | Clytia hemisphaerica | exon |
| TCONS_00064580-exon-scaffold_419-1491911889:407058..407124 | TCONS_00064580-exon-scaffold_419-1491911889:407058..407124 | Clytia hemisphaerica | exon |
| TCONS_00064580-exon-scaffold_419-1491911889:406349..406477 | TCONS_00064580-exon-scaffold_419-1491911889:406349..406477 | Clytia hemisphaerica | exon |
| TCONS_00064580-exon-scaffold_419-1491911889:405916..406026 | TCONS_00064580-exon-scaffold_419-1491911889:405916..406026 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_419 | supercontig | scaffold_419:405916..407124 - |
Blast
The following BLAST results are available for this feature:
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