TCONS_00064576 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064576
Unique NameTCONS_00064576
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064576 ID=TCONS_00064576|Name=TCONS_00064576|organism=Clytia hemisphaerica|type=transcript|length=1472bp
TGACAAACGATTTAAATGTATTTGAATCGAATTAAACTGAATTGGTATAT
TCAAGATGAaattattttaaacaatttttcaattcccaTGATATGACATT
TAAAGGAATTTAAAGGAAAATGTGTCTTCGGGAGAAAGATCTATTCACAC
GATTTAAAAGTCACAGCTTGGGAAGTGTTTAAAAGCCACTTGAGTCAGTG
GTGGGTGACATTTCAAAGATACTGCGTACATGCAAAAGTTATAAAATTAC
GCATTGCCTAGGATAAAGTATGATTTTGCTATAGTTATTTTCCACACGCA
AGCTTTTACCTAATGTAAGAGTGAGCGATAACGAAAAATGCGTACAAAAA
TGTCTTTCAAGGCGGCAATTTTTATGGTGTTGTTTTTGAGAACGTCCAAA
GCAGCCATTTCTTATGATGACTGTAAGGCTGGCGATGCAATCTTCAAGAA
ATCGAAAACAGAGCTTATTATTCATGGATCAGTGGAATGGGAAGAATCTT
TTCAGGTTACAAACGATATGCAATGCTCAATGGCGTGTAGGAAACATACC
AATTGTCAATCGGCTATTGTAAACGAGTCAAATACATGTACTTTAAGGGA
TGTCAACCGACGTTCAGCTCAAGTTACCTTCAAACCAAATCCTTCGTTAA
GGTATTTTGAGCGCCACGCATGCCCACCAAGTGTAGAACAAGCTTTTATA
GCTTTCGTATCTGAtgttgaaaattgtaaagacaTTTACGCGAAGGGTCA
TTTACAAAATGGTATTTACGCTATCAAGCTAAGCTCTGGTGTTTACCAGC
CAATACGTTGTAACATGGTTAATCAAGATGAAGGAGGCTGGACTATAGTT
TTGAGACGGCTTAGTGGTATAGTGCCATTTGATAAAAATTGGGAAACATT
CAAATCTGGTTTTGGTTCACTAGATACGGAATTTTATATCGGGAATGAAC
GATTCCATCAATTAACTCAAAATGGAactcaaaagttttttatcaaaatg
gttTTAAGAGGAGGCAACGTCCGAAATATGATTTTTGACGAAGTGCGCAT
TGGTTCCGAAGCTGAAAAATATTCATTGAACATAGGTGATGCAATGACTG
GTTCTTACGACACCTCAGGAGGTAAATTGAAGAACCAGAATGACGGAAAG
AAATTTACTACTTATGACCAGGATAACGACAATTCAGATAACATCAATTG
TAGTCACAACAATGAAAATCACGGATGGTGGTATCAAAGATGTGGTGCTG
TAAATCTTCATGGTGTTTGGAGTCATACTAATGGTGGGTCACCCGGAATC
CGCTGGAGTGGAGTCGATGATGTCAATGGGCAAAGtgaaaacattgaaaa
ggtTTATTACTACATCAAGTGACTTTCAAACCTGTGCATGATGGTCTGGT
TGAAAATTGAccgtttttttgtgttttttttctttcaaatcgtGCAAGAT
TTTTTTGTATAcccaacttcag
Run BLAST on NCBI

transcript from alignment at scaffold_419:359905..364459-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064576 ID=TCONS_00064576|Name=TCONS_00064576|organism=Clytia hemisphaerica|type=transcript|length=4555bp|location=Sequence derived from alignment at scaffold_419:359905..364459- (Clytia hemisphaerica)
TGACAAACGATTTAAATGTATTTGAATCGAATTAAACTGAATTGGTATAT
TCAAGATGAAATTATTTTAAACAATTTTTCAATTCCCATGATATGACATT
TAAAGGAATTTAAAGGAAAATGTGTCTTCGGGAGAAAGATCTATTCACAC
GATTTAAAAGTCACAGCTTGGGAAGTGTTTAAAAGCCACTTGAGTCAGTG
GTGGGTGACATTTCAAAGATACTGCGTACATGCAAAAGTTATAAAATTAC
GCATTGCCTAGGATAAAGTATGATTTTGCTATAGTTATTTTCCACACGCA
AGCTTTTACCTAATGTAAGAGTGAGCGATAACGAAAAATGCGTACAAAAA
TGTCTTTCAAGGCGGCAATTTTTATGGTGTTGTTTTTGAGAACGTCCAAA
GCAGCCATTTCTTATGATGACTGTAAGGCTGGCGATGCAATCTTCAAGAA
ATCGAAAACAGAGCTTATTATTCATGGATCAGTGGAATGGGAAGAATCTT
TTCAGGTATAATACGATTATTTCCTTTTTTCATCTTAGACACTCACTCAC
TTAAGAATATTCTTTTCAAAATGGCTCTTCTTGCTCTGCTGATTGTGAAC
ATCTTCACACCTGTTCCATCCCAGCTGACTTATTTAACGTTGTTACAATG
TTCACGTTCACCTAACGGTATATGGGTGTTGTGGAAATTATGTTTGTAGA
TTTTGAAGATACTGTGACTATATTCTTTCTACTTAAAGGTTACAAACGAT
ATGCAATGCTCAATGGCGTGTAGGAAACATACCAATTGTCAATCGGCTAT
TGTAAACGAGTCAAATACATGTACTTTAAGGGATGTCAACCGACGTTCAG
CTCAAGTTACCTTCAAACCAAATCCTTCGTTAAGGTATTTTATGATTTGT
TACTAACTGTCTAGCTGGAAATATGAATTTTGGACAATAGTATTTTTCCC
AAGAACTGTTTTATAGTAGTCTGAATCGCAGACTACTATAGATTTATTGG
GGGTAAAAGATGTATTGTCAAAGGGGTATCGGAAAAATTTCCATGTCATT
ATTGGTTGATTTAATGCTTGTCAACTGGGTGGATTTCTGATGCTTGTCCA
GGGGTGGGTGAAACACTTGTTGGAGAGCCTTTGTTAGCAACTTTATTGTT
TGAAATTGTTTCCATGGTAACGTATTTGGCTTCATCAAACAAGTTATAAT
TATTTTTGAAGAAATATTTCATATTAGTTACTCCATATCTCAGTTTAAGC
ACCAAACAATTTACGACGGATGGTTTTAATTAGGGCGTAACCGATTAAAC
TTTCTTAGTCTAAATCCTAATCTATGACATGAATTTTAAGTAGCAAGTTT
TGTGCTTTTTTAGTCCTCAACTTCGAAAATATCCCATGTAAAACATAAAA
CTCGTCGTCATGATAGTCTAGCAAGCTAGACGACTAATTTATACATAGTA
GAAATAAAGCAAAAAGTAATAAATGGAACAATTTTAGTCGTCTAGAAACA
TTTGTGCACTAACTCCAAACGAAAGAAAAGTGTCAATATTTGCAATTATA
ATTTTTTCCTGCTCAAAATAATTCTTGAGAAAAGAAATATGTGTGGATTT
GTGTATTGAAAGTTTTTCATTTGAGTTGATTTCGTTTTGAGAGTTTGTTG
TTGCTTGATAAATTGTTTTCTCGCTACGCAAGTTTCTGCGTAGCTAGCCC
CTGTATCAATAAGGCAGGAACACCGGATTCTCCCAGTCGCTTATAAAAAC
TAAATCCCGTATTATTATTATTGTTAGTATTGGTATTATTAGTATTACAC
GCATTATAAACGACTCCAGTCTATCGTCATGATTAACCTCGCTGATATGA
ACGAAAGCGCGGAGGAAGTCATTAACATTCATTTTCAAACAAGCTTGTCT
TTTCATTTTGTAGGTATTTTGAGCGCCACGCATGCCCACCAAGTGTAGAA
CAAGCTTTTATAGCTTTCGTATCTGATGTTGAAAATTGTAAAGACATTTA
CGCGAAGGGTCATTTACAAAATGGTATTTACGCTATCAAGCTAAGCTCTG
GTGTTTACCAGCCAATACGTTGTAACATGGTTAATCAAGGTAAATATTTT
ACTCGCCCGCCCTGTCTCCTCGCTTATGACCTTGTGAATATTTTCAATCC
TAGAGGAAACCCCCCCCCCGCCTTTGCGTCAATAATTATTTCTGTATTAG
CGAANCAATTCTAGAGGAAACCCCCGCCCGCCTTTGCGTCAATAATTATT
TTTGTATTAGCGAAATGTTTTGCAAAATCGATCCACCAAGAGTTCTTGAT
GATTCTATGTCAATACAACCAGAGCATAATCATATTAGGTTTGACAAAAA
ATAATCCAATCCATTTAGTTTTTCCTTTCACGAATCTCCAGCTAATAAAA
TGTTGAAAGACTACCACTACTTTCTGTATTAGCCACTTTTTTCAGAGTCG
TTAAAATTTTCAGGTCTGTTCATTTTTCCCCAAAAGTTCAAGAAAAAGGA
CTTATCTGTGATAAAAGATGAAGAACATGCAATATCCGCCAAATAAACGC
CACCAAATTTTGATTATTATTCTCCAAATAGTATCATCCGCGAAATTCAG
TCCCCGTGATTGAAACTAAACTATGCAATTTTATCCCATTAAAAGTATTC
CTATTTAATTTTCTACAGATGAAGGAGGCTGGACTATAGTTTTGAGACGG
CTTAGTGGTATAGTGCCATTTGATAAAAATTGGGAAACATTCAAATCTGG
TTTTGGTTCACTAGATACGGAATTTTATATCGGGAATGAACGATTCCATC
AATTAACTCAAAATGGAACTCAAAAGTTTTTTATCAAAATGGTTTTAAGA
GGAGGTAAGAGATATAGAGATGGTAGAAGAGCGTATATTTCTTGACTGCA
CAAAAATTAAAAAGGCGAATTTTATAAAGAAATTCCATTTTTAACACTCC
CCTCTTCAAACCTTTGGTACATTTTCCATCAAAGAAATGAATAGGATTAA
GGTTTATCGTGTTGNCCTTTGGTACATTTTCCATCAAAGAAATGAATAGG
GTTAAGGTTTATCGTGTTGAAATTTCTTTACTTCTTTTTGCCATCATATT
TCATACTTTTGGTACGATAGTAATTGACAGTTTGTATTTTCAAGGTGTAG
ATATCTTATTTGCTATCTCAGTGCAAATTAAAATGTATGAAAATAATACC
AATGCCAATGAAAGAAAACTTAATACGTTTTTCTTCTACATAANATCTTA
TTTGCTATCTCAGTGCAAATTAAAATGTATGAAAATAATACCAATGCCAA
TGAAAGAAAACTTGATACGTTTTTCTTCTACATAATATTTCAGGCAACGT
CCGAAATATGATTTTTGACGAAGTGCGCATTGGTTCCGAAGCTGAAAAAT
ATTCATTGAACATAGGTAACTATCTTGCCCCATGAGTGATTGCCAACTTG
GTCAAATGTGTCACTGCTACAAAACATAGGTTTGTGGTCCGAATCCCCGC
TCTTTCCCCATGTTCCATTCAGTTCATAGATAGCCCAGCCGGTTGGCTAC
GGACCCTGTAAAAACAACGAAAAAAAATGTCTAAAAAGTCCTAGATTACT
GGGCTACGCATGTAAAGTAGCGACTTTATCTATCTATAGGTGATGCAATG
ACTGGTTCTTACGACACCTCAGGAGGTAAATTGAAGAACCAGAATGACGG
AAAGAAATTTACTACTTATGACCAGGATAACGACAATTCAGGTAATTATC
TCTTGTAGTTTCCAGTGCTCAGACCACGACAATGCGTAGAGTTACGGATT
TCGCCCACGTGGTCATTTAACATCTTTTCAGTACACCCGATCATCACCGT
TGATTTTTCCTTTATTATCTCTGTACATACAGTTTTGAGCTTTTTAGAAA
GGTCGAGAATATTTGCTGACGTAGCAATAATATATGCGAAAATTTTTGGC
CTTTTTTCGCTTACATTTCATGGAGAAAATGCAAAGTCGGATCGCTGTGC
CCTGAGAAAAACCTACAAATTTGTTGAAATTATTTTCAAAGTTGTCTTTA
TCTCAGGCAATTATATTTTTCGAATTCAAATCTACTAAACTTTTTCTAAA
AAAACGTTACAAATCATATTGCCTAGACTTTGATAGGTATTTTAATATCT
GTAAAAGATAACATATACAAAGTATAGAATATTAAAGGTTCTTAACTTCC
CATAAAACACGAGTAAATTAAACCACCGGGAACGAAATATTATACGCATC
TGAATTTTAAATAATTTCAGATAACATCAATTGTAGTCACAACAATGAAA
ATCACGGATGGTGGTATCAAAGATGTGGTGCTGTAAATCTTCATGGTGTT
TGGAGTCATACTAATGGTGGGTCACCCGGAATCCGCTGGAGTGGAGTCGA
TGATGTCAATGGGCAAAGTGAAAACATTGAAAAGGTTTATTACTACATCA
AGTGACTTTCAAACCTGTGCATGATGGTCTGGTTGAAAATTGACCGTTTT
TTTGTGTTTTTTTTCTTTCAAATCGTGCAAGATTTTTTTGTATACCCAAC
TTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040496XLOC_040496Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064576-exon-scaffold_419-1575043694:363955..364459TCONS_00064576-exon-scaffold_419-1575043694:363955..364459Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1575043694:363576..363721TCONS_00064576-exon-scaffold_419-1575043694:363576..363721Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1575043694:362371..362546TCONS_00064576-exon-scaffold_419-1575043694:362371..362546Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1575043694:361606..361791TCONS_00064576-exon-scaffold_419-1575043694:361606..361791Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1575043694:361045..361116TCONS_00064576-exon-scaffold_419-1575043694:361045..361116Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1575043694:360719..360820TCONS_00064576-exon-scaffold_419-1575043694:360719..360820Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1575043694:359905..360189TCONS_00064576-exon-scaffold_419-1575043694:359905..360189Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1510915933:363955..364459TCONS_00064576-exon-scaffold_419-1510915933:363955..364459Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1510915933:363576..363721TCONS_00064576-exon-scaffold_419-1510915933:363576..363721Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1510915933:362371..362546TCONS_00064576-exon-scaffold_419-1510915933:362371..362546Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1510915933:361606..361791TCONS_00064576-exon-scaffold_419-1510915933:361606..361791Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1510915933:361045..361116TCONS_00064576-exon-scaffold_419-1510915933:361045..361116Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1510915933:360719..360820TCONS_00064576-exon-scaffold_419-1510915933:360719..360820Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1510915933:359905..360189TCONS_00064576-exon-scaffold_419-1510915933:359905..360189Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1491911889:363955..364459TCONS_00064576-exon-scaffold_419-1491911889:363955..364459Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1491911889:363576..363721TCONS_00064576-exon-scaffold_419-1491911889:363576..363721Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1491911889:362371..362546TCONS_00064576-exon-scaffold_419-1491911889:362371..362546Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1491911889:361606..361791TCONS_00064576-exon-scaffold_419-1491911889:361606..361791Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1491911889:361045..361116TCONS_00064576-exon-scaffold_419-1491911889:361045..361116Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1491911889:360719..360820TCONS_00064576-exon-scaffold_419-1491911889:360719..360820Clytia hemisphaericaexon
TCONS_00064576-exon-scaffold_419-1491911889:359905..360189TCONS_00064576-exon-scaffold_419-1491911889:359905..360189Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:359905..364459 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.52666	0.644776	0.623905	0	0.0771794	0	0.0400649	0.110732	0.232247	0	1.13951	0.370643	4.49996	4.10489	1.55363	0.784191	0.502229	0	10.0226	12.5185	0.629726	7.9591e-06	0.408917	0.717091	0.732429	0.949995	1.53194	0.680712	0.202575	0
Blast
[Close]
BLAST of TCONS_00064576 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.424e-28
Identity = 73/202 (36.14%), Postives = 109/202 (53.96%), Query Frame = 2 
Query:  722 NCKDIYAKGHLQNGIYAIKLSSGVYQPIRCNMVNQDEGGWTIVLRRLSGIVPFDKNWETFKSGFGSLDTEFYIGNERFHQLTQNGTQKFFIKMVLRGGNVRNMIFDEVRIGSEAEKYSLNIGDAMTGSYDTSGGKLKNQNDGKKFTTYDQDNDNSDNINCSHNNENHGWWYQRCGAVNLHGVW------SHTNGGSPGIRWS 1309
            NCKD+  +G+  +G + I L       + C+M + D GGWT+  RR+ G V F ++W  +K GFGS   EF++GN+  H LT  G+ +  + +V   GN +   +   ++  EAEKY L +G  + GS   +G  L   N+   F+T DQDND S + NC+   +   WWY  C A NL+G++      S+ N    GI WS
Sbjct:  117 NCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDM-DTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGS---AGNSLTGHNN-NFFSTKDQDNDVSSS-NCAEKFQG-AWWYADCHASNLNGLYLMGPHESYAN----GINWS 307
The following BLAST results are available for this feature:
BLAST of TCONS_00064576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FCN11.424e-2836.14Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2[more]
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