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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064573 ID=TCONS_00064573|Name=TCONS_00064573|organism=Clytia hemisphaerica|type=transcript|length=2118bpRun BLAST on NCBI protein sequence of TCONS_00064573-protein >TCONS_00064573-protein ID=TCONS_00064573-protein|Name=TCONS_00064573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp MRTKMSFKAAIFMVLFLRTSKAAISYDDCKAGDAIFKKSKTELIIHGSVERun BLAST on NCBI transcript from alignment at scaffold_419:334551..364326- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064573 ID=TCONS_00064573|Name=TCONS_00064573|organism=Clytia hemisphaerica|type=transcript|length=29776bp|location=Sequence derived from alignment at scaffold_419:334551..364326- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_419:334551..364326- >TCONS_00064573 ID=TCONS_00064573|Name=TCONS_00064573|organism=Clytia hemisphaerica|type=CDS|length=5004bp|location=Sequence derived from alignment at scaffold_419:334551..364326- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00064573 vs. Swiss-Prot (Human)
Match: FCN2 (Ficolin-2 OS=Homo sapiens GN=FCN2 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 1.138e-18 Identity = 44/118 (37.29%), Postives = 67/118 (56.78%), Query Frame = 1
Query: 592 CKDIYAKGHLQNGIYAIKLSSGVYQPIRCNMVNQDEGGWTIVLRRLSGIVPFDKNWETFKSGFGSLDTEFYIGNERFHQLTQNGTQKFFIKMVLRGGNVRNMIFDEVRIGSEAEKYSL 945
CKD+ +GH +G + I L + C+M + D GGWT+ RR+ G V F ++W T+K GFGS EF++GN+ H LT GT + + +V N + + ++ EAEKY+L
Sbjct: 105 CKDLLDRGHFLSGWHTIYLPDCRPLTVLCDM-DTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRVDLVDFEDNYQFAKYRSFKVADEAEKYNL 221 The following BLAST results are available for this feature:
BLAST of TCONS_00064573 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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