TCONS_00064565 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064565
Unique NameTCONS_00064565
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2852

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064565 ID=TCONS_00064565|Name=TCONS_00064565|organism=Clytia hemisphaerica|type=transcript|length=2852bp
AATGAAGAATAGAATTTATTCGCTATCAATATTCCATTGGATATCGATTT
GCTGAAGATGAAAAGTTTAATTTTATCACTTGTGCTGTTCAATATATTCA
CCAAAGTCGTTAGTCAAGCTTTGACTAAAGAATGGGCTACTCCGAAATTG
GCATGTATATATGGACACAatgcaaaaatatatttcaatgttcgaaattt
gagaaaatgtcaactCAAGTGTGAAGCTCTGTCATATTGTAAATCCATTG
AATATAACAGAAGAATACGACGGTGTCAATTATCCAGAGAGACATCCTTG
ACATCCAAAAAATCATACAAGGTTCCATGTCACTATGATCCTAAGAATTA
TTATTTTACTGAGATAAAGCCGAAAGCTTTAACTAAGGAATGGACGAAAA
GAATATTCGCGTGCATTTACCATCATAATGACAAAGAAATCCAAAACATT
CGATCTTTTGAAGACTGTCAACATAAATGCGAAGCTGCTAAATATTGTAA
TTCCATTGAATACAACAAGAAAACTCGTAAATGTCTTTTGACAAGAGAAA
CTTCTTCAACTGTAGCAAAGGGCGATTACCACAAACCTTGTTATCACGAC
TCAAAGAATTATTTATACGCTGAAATAAAGCCAAAAGctCTAACGAGGCC
ATGGACGAAACAGATATTGGCGTGTATTGGCGGAGCAGTCAAAACATTCA
TCTACGATGTTCGAAATTTCATTGACTGTCAACATAAGTGTGAAGCCGAA
CCATCTTGCAAATCTGTcgaatataaaaaaagaatgctTGTTTGTCTACT
GTCCAAAGAAACAACTTCGAGTGCTTCAGAGTATTATGAAGAACCTTGTG
ATAAACATTCTGAGAATACTTTCTTTGCCGAAATAAAAGCTTCAACTATA
AGATGGGCTCCTCCTAAATTGGCATGTATCCGAGGACACAATGACAAGAg
tcttgaaaatattcaaaatctcaAAGATTGCGAATTCAAGTGTGAAGCCG
AACCCTATTGTAATTCTGTTGAATATAACGAGATGAATCGTCGTTGCCAA
TTGACAAGAGAAACATCTTCAAGTGTGCCGAACGATTTCAAGGAACCTTG
TCATGTCAATCCGATGACTTATCGTCATTCTGAGATAGTTCCAAAAGtcT
TGACAATGCCCTGGACTCGGCAAAAATCAGCGTGTTACCACGGAGTAATT
CCTCCTAACAATATCAATAATATTCGAAATTTTAACGAATGCCAACGAAA
GTGCGAACAAGAGACATATTGTAATTCTATTGTATATAACAAGAAAACTC
TCCGATGTCTGATGACAAGAGAAACATCTTCGACTATTCCAAATAATTAT
CAAGAACCTTGTAAGAGCCCTGATCTTTCCTATGCTGAAATAGAACAAAA
ACtTTTAACTGATGAATGGACCGATGAAATATTGGCATGCATCACACTAA
AGCACAGTACCGAAATAAACATTGCCCGAAATTTCAAGGAATGTCAATAT
AAATGTGAAGCTAAATCATTTTGCAAATCTATTGTATACAACAAGAAAGA
TCAGGGTTGCTACTTGATGAAAGACACTTCTTCCACTGTACCACGTGATT
ATTCAGAACCTTGTAAAACTACCACTCATCCAGAAGACTATTTATATGCT
GAAATAATTGAGCAATGTGGTATCAGCAAAGTTATACAGAAAAGAATTAT
TGGGGGACAAGACGCAGATGTTGGAGAATATCCGTGGTATGGTATGCAAA
TGTTGAGTTTACGCCCACAGGAGAAAATTTTACGATTTGTGGGGGGAATT
TGATCCACAAGAAATGGGTTTTAACAGCTGCACATTGTATTAAGGATGAG
ATTGTACATAACCGAGTTGAATTAGGTGAACACGTGAGACAAATCAGAGG
TGATGGGACACAGTTAGCACAAGTAAAAAAGATAATTCTACATGAAAGCT
TCAATAAACCACACAGTTTCAGCTATGACTTCGCCCTACTGGAACTTGAA
ACGGAAGTGGAAATAACGGATAGAGTTCGCACTATTTGTCTACCAAAGAA
ATATCAACAAAGTGAGAATCATTTCGATAATGATGAATGCTATATTACTG
GCTGGGGAAAAATGCAGAATGACaatccaaaaattccaaaacatGGGACT
TTGCAAGAAGCAACTGTTAGAGTGTACACAAAAGAAGAGTGTTTAAACGA
TCGGGGAAATAACAGAATCGATGACAGTATATTTTGTGCCGGATATCGTC
GAGGTGGAAAAGACACGTGTAAAGGAGACAGTGGTGGTCCCTTACAATGC
AAAGATGGAAATAGATGGATTCTCTGGGGTGTTACTTCTTTTGGAAAGAG
ACCATGTGCATCACCTGGTAAAGCTAGTGGCTATGGGAGAGTTACCCACG
TTTTGGATTGGATTGAGGAGAAAACTGGAATAaccttttaattatttttg
ctttgttttgctACAAAGGTAttgcaaaaagtttgttaagAAAAACTTGT
TGGAGTCATGCGGGTTACATATTTCGACCAGGCACAATAATGGCATCATT
ACAATTTCATATCTAGACTTTCACTTTAACCacatatttttcagattttt
caattcttttaaaactttagtTTAGCCAATGAAAGCGTGCAGTGTTGAAT
AAAATATTTATCTTTTGATGTCTTTTTGGAGGTCCGGGGCCACTTGTAAC
AtctttcatcaaaatgaaataTAAATAAGTGGCAGTttaattgataaact
ttgtttCAAGTGACCCACCAGATTTAATGAAAATCGATGGATATAAATTT
GTCTATCATAAACTAAAATTTTTGACTAGACTatcaaaatgaaacttttt
tg
Run BLAST on NCBI

transcript from alignment at scaffold_419:272288..280850-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064565 ID=TCONS_00064565|Name=TCONS_00064565|organism=Clytia hemisphaerica|type=transcript|length=8563bp|location=Sequence derived from alignment at scaffold_419:272288..280850- (Clytia hemisphaerica)
AATGAAGAATAGAATTTATTCGCTATCAATATTCCATTGGATATCGATTT
GCTGAAGATGAAAAGTTTAATTTTATCACTTGTGCTGTTCAATATATTCA
CCAAAGTCGTTAGTCAAGGTAAACATATTACTCTTTTTAAAACTATATAC
TAAACTTAATATCTACAGTATGCAAATCTTTTCCAAGATTCTTTAAAACA
CCACTGTCTCGCAGCCCCGGTGAAACTTTTTCTTACAGCGAGGGTAAAAA
CTTCGATTGAAATCTCAATGGGGATGAAAATACTATTGTTACAAGGCTAA
AAAATTTATTGGAATGGTTTTGGAATGCAATTTCTAAACAGTGAATTTCG
AATGGGGATGAAATCATTGTCAATCTCTTAGTGGGGCTGAAATTTTAGGG
TNAACAGTGAATTTCGAATGGGGATGAAATCATTGTCAATCTCTTAGTAG
GGCTGAAATTCTAGGGTATTTTTCCCATCGGGGACGAAATTTCCAGCGGG
TCTGTGACACATGTGCCAAAATATTCTAAAACCTACCAAGATGCTAAAAA
ATGCTTCAATTCGAACATATTACATGCCGTTGAAAAGATAATTCAGAGCA
CTAAGAAAAGTGGTTCAAAAGATTTTAGAATATAAACATAAAAATGAAGA
AGAAAATACTGAACTCTTGATTCTTTGGTGCTAGAAACTGTACAGTATAC
CAAAAATGAAGCTAGTAGAATAAACGAATTCAAGATAAATTTTTTCTCAA
TCGTTTTCATCTCAACAATCATTGTGTTCTAGATGATCTTTTCAACGCTA
TATATTTCGTTAGACTTGAAGAATTGCTCGAGGAATTGCTTTTAAAATGG
CAGGTCAGACAAGATTTAGTGCACGCTCGTTAGTTATTAGTCCAGCTGTC
GCACGTTGGTAAGAATATTATGGAACTCTTTTAAAATATATTTGATTCTC
ACCTTAGCTTTGACTAAAGAATGGGCTACTCCGAAATTGGCATGTATATA
TGGACACAATGCAAAAATATATTTCAATGTTCGAAATTTGAGAAAATGTC
AACTCAAGTGTGAAGCTCTGTCATATTGTAAATCCATTGAATATAACAGA
AGAATACGACGGTGTCAATTATCCAGAGAGACATCCTTGACATCCAAAAA
ATCATACAAGGTTCCATGTCACTATGATCCTAAGAATTATTATTTTACTG
AGATAAAGCCGAAAGGTAAGAAGTTTTGATCTTCATTATACTCTGTACTG
TAAGGTCCCGAATAAACGTCCCCATCTGGTTATTAATTTTTGAAAGATTT
TCGCACCCCTGTTCTTATTAGGAGCCCCTAATAAGAGGTACAATTTCGGA
CCCCCTCTTTTTTGTCAGATTTTGAAGAAATTTCGGACCCTCTCCTTTTT
ATTTGGATACTATTACCCACAAACGAATTTATATTAATTTAAATCAACCA
AAAGAAGCATCCGGGAATTCATATTATGAGATGACTGTGTTGAACAAAAT
ATTTTGTCGTCAGCGGAAATCAGCTAAATTTGAAATTATGCAATAAAATT
CTTACCGCAGTAAATTTTGAAAGTTTTTTTTCTAAATATTCCTTTTATAC
CCTGAGTACCAGAGGTTGAGATAAATGATTTCGACCTGTGCTTTTCACGG
TATTCCTTTTAATGTTATTTCTTTCTTTAGCTTTAACTAAGGAATGGACG
AAAAGAATATTCGCGTGCATTTACCATCATAATGACAAAGAAATCCAAAA
CATTCGATCTTTTGAAGACTGTCAACATAAATGCGAAGCTGCTAAATATT
GTAATTCCATTGAATACAACAAGAAAACTCGTAAATGTCTTTTGACAAGA
GAAACTTCTTCAACTGTAGCAAAGGGCGATTACCACAAACCTTGTTATCA
CGACTCAAAGAATTATTTATACGCTGAAATAAAGCCAAAAGGTAAGTACA
ATCTTTTGCTGATCCCATTTATTCTAAAAGCGAGTAATTCAGTCCCGAAA
ATTTTCAACGGATCGGTATGGTTCGGAACGGTTTCAAGGATGATCTTTAA
CCCATTTACCACATATTTATCTCAAGTCAACGGTTCGAACTCTCTTTGTA
TTGGTATTGTAAACAAAAAGAATTTGGCTCAAAAAATTGGGGAAGCAGAT
TTCGCAAAACTGTTTGGATTGGTTATTCAAAATTTTCAGATTTAAACCGA
TCCGTTTAAAACTTGCAATATGGAAAATTCCTTGGGGCAATTTGGGAATA
ATCACGAATTTATTTCTGACAAAATCGTGAATAAGTAAACATTATTTTAC
TGGCGCTCTAGTAAAACAAACGTGAATAAAAATGTTCAATAAACTTTAAG
TTCGGCAAAGCAGATACGTGATTCATTTAATTTTCAACAAAAAATGTTCT
TTATGATTGCTGTTCCTTTTATTCACTCAAATGCGTCCATAATAATCATC
GCGAATACACCACTTTCTTGTAATTGAATTCAAAATTGTTGGTCGAGCAT
CGGGACTTTCATTAGCATGTCACTGTCCATGTGTCCGTGGTGCTACATGA
CCGTTTTTGAAAGAGTAGTGATCTCTCAATTCAAGTTTATTTCAAAGAAA
CGGCGGCTTTTAACAGGGAAGGGGCTTCCGAAAGACCGGTATTGAACCAT
TTTCCTTCTGTTATGCCAGTATCTTATTCCCAGGCCTGTTAGACAACTAG
CATGGTCCTTCCAAATTCGAGATATCATATTCGTCAGATTGTTTTTTTTC
ACCCACCCCTTTAGAGCTTCAGCGTGGTGGACAGAAAATAATCACGATCT
GATCTCATGTTAAGAACACGTTGCTATTTCATCGGGTCTTCAAGTCACTT
CGGCTTTTTGTTTGTTTTTTTAGCTCTAACGAGGCCATGGACGAAACAGA
TATTGGCGTGTATTGGCGGAGCAGTCAAAACATTCATCTACGATGTTCGA
AATTTCATTGACTGTCAACATAAGTGTGAAGCCGAACCATCTTGCAAATC
TGTCGAATATAAAAAAAGAATGCTTGTTTGTCTACTGTCCAAAGAAACAA
CTTCGAGTGCTTCAGAGTATTATGAAGAACCTTGTGATAAACATTCTGAG
AATACTTTCTTTGCCGAAATAAAAGGTATGATATGGATTATCTTTCATCA
TCAAAGTCATCATCGAGGTCAAAATTCAGAAGCGTAGACAGGAGGGGCGC
AAACTTTGTGAAGGAGAACATATTTTATGACACTTTAAATATATATTCAT
AATATAAAAAGATAATTACCGTGTCATAAAAATCTGCTCTCCTACACAAA
TTTTGCGTCCCTCCTGTCTACGCTACTGAAATCTTCTTCGTGTAACTATC
TTTAAAAAAGGCACATTGCATTTTCGAAGTGTGGTCTAAGGCTCTCCGAG
CATCATTCTATTTCTTTATTTCAGGAGCCTAAATACTCCCCCTCCTCATA
TCACAAGATAGGGAAAAACTTTAAGCTTGAGTTTGTTACCCGTGATGGAT
ATCGACAAAGATTTTCTTCTTATCTTAGTCAATAGAGGTAAAATATAATT
CTGTTTTGCATCGCGTTTAAATTTTTCTCTTAGCTTCAACTATAAGATGG
GCTCCTCCTAAATTGGCATGTATCCGAGGACACAATGACAAGAGTCTTGA
AAATATTCAAAATCTCAAAGATTGCGAATTCAAGTGTGAAGCCGAACCCT
ATTGTAATTCTGTTGAATATAACGAGATGAATCGTCGTTGCCAATTGACA
AGAGAAACATCTTCAAGTGTGCCGAACGATTTCAAGGAACCTTGTCATGT
CAATCCGATGACTTATCGTCATTCTGAGATAGTTCCAAAAGGTTAGATCT
TTGTATTGACCTTATTATGGAATTTGTAGCAAGTTTGTAGGGAATCTCGC
TAAATCGAATATCTATATAATTCGAACCAATACTCATTTTCTTTCAAGGA
AAAGCCCTTGTAAAATAATCTCTATTAATCGAATCTCTTTTGATTTACCA
AATTAGACTTCTCGATTTCGAAATAGCCAAAGTAGATTGTATCTAAGTTC
AATCATGCTCTGATTCAAATATGATAAGTGGGGATAAGATTAAGATTCGC
ACTTTATAAAGATCTGATCTCAAACATGTCAAACTGAATAGTTAATGAGT
ATACCAAGCTTGCGAATGTGTTGTGTTAGCCAATTAGAATATCAGGTGGT
TGCATTGTTTATACCTGGTTCGTTTTACTTTTACTGTCTACTGATGATTT
TTGGAGAATTCTTTCTCTTTAACATTTTTTTATTTCTAGTCTTGACAATG
CCCTGGACTCGGCAAAAATCAGCGTGTTACCACGGAGTAATTCCTCCTAA
CAATATCAATAATATTCGAAATTTTAACGAATGCCAACGAAAGTGCGAAC
AAGAGACATATTGTAATTCTATTGTATATAACAAGAAAACTCTCCGATGT
CTGATGACAAGAGAAACATCTTCGACTATTCCAAATAATTATCAAGAACC
TTGTAAGAGCCCTGATCTTTCCTATGCTGAAATAGAACAAAAACGTAAGT
CTACTTATTATTATGCTTACACTTGTCATTATATTCTTTGCCAACCTCGA
TTCCAGGGGCGAAAATCATTAAAAAAAGTGATGGGGATGAGGTTGATTTC
GTTTTATTTTATTATTTAGTTTCAAGGGTGTGAAAATAGCTTGTTTTACA
ACCAATAATTCTTATAATTGATTGAGGACTTTTTCATGCGTTATAGTGCC
TTTGTAATTTTCTTTTAATTTGCCGTTAACAGAATCCGGTGATTTTCGTT
ATCATCCTGGTTAAGGGGTTTATTGGTATTGTCGTTTTTGACTTTTAAAG
TGTCTTCATTTCATCTGCATCGCTAAACTCATACTTTGCGGGTCATTCAT
AGCGTCAGCTAATTGGATAATAATGATTTAATAGATAAATTTTTCGTCTT
TGAACTTTTTTTCTAGTTTTAACTGATGAATGGACCGATGAAATATTGGC
ATGCATCACACTAAAGCACAGTACCGAAATAAACATTGCCCGAAATTTCA
AGGAATGTCAATATAAATGTGAAGCTAAATCATTTTGCAAATCTATTGTA
TACAACAAGAAAGATCAGGGTTGCTACTTGATGAAAGACACTTCTTCCAC
TGTACCACGTGATTATTCAGAACCTTGTAAAACTACCACTCATCCAGAAG
ACTATTTATATGCTGAAATAATTGGTAAATGTTAATTATATGCAACCCAT
GACGTCAAAACGGGGTAAAAATTACCCCTGTTACCCTCCGTATAGTCTGA
GAATCCATTTGGAAGAAATTCGTCCTTGATTCTAAACGGAACAGGGACCA
AAGTTTTTCATTCCGACATGAACGGTTTTCGTTGCCCATATGATGAAGTT
ATCAATAACACGGCTTTTTTTCTTATAGAGCAATGTGGTATCAGCAAAGT
TATACAGAAAAGAATTATTGGGGGACAAGACGCAGATGTTGGAGAATATC
CGTGGCAGGTTAAATATAATTTATTTTCGAAGTCGAAGCATAAAAAATCT
CGTAAAAAATCATCACTCTGCATAATGTTTCATCCTATTAATAAGAATTC
CTGGTGGGGGTCAACAGTGGCCACCTGTCGGAGAGTCTACAGACCCAAAA
TGAGGCCTAAAAAGAGCAAAAGCTTTATAAGGAGCTCACGTACAAATTAC
TTGCTTGAAAAACTCATAGAAGCGCTCATAAAAAAGCAGGAGTTCTAAAC
ATCGACCAGAAATGGTGACCACGACGGGCGACCACGACGGGCGACCACGA
CCAGCGACCAGATAAATTTGGATCGTCGAGTTTTTTCTCTTTTTCCAACG
TAGAGTGTCTCTCCTTATCATTTGAATATCGCATATTGAAGAGAAAGCTC
ACCCCTTTCTCAATCTATTTAGAGCCACATGCCCTATGCATAAAACAACC
ATTTCGATTCGACGCTCTTGGAGCTTGATTATAGTGTCAATTCCTTTCCT
TTTGTAATATCAGCATCAAAATACTTAGCGGCATAAAATTGTTTGAAACT
GGTGAGAAGCTTTGTATTTCATCATCAAATTGTTATTTCTGTCGAAATTA
GTCATTTTGTCAGTCTAAAGACAATTGAGTAATTGATTAGATTCATATCT
CTAAAACTGGCTTTCCAAATTTTTTTCTACTGACAAGTTCTATCTATTCA
TACTAAAGACATCTCATTCAGCATAATTAAAATATTCGATGTAACAAAAC
TTACAAACATCATACTTAATGGCCCTGTCAATATTTTTGTCAAATAGTGT
CACTTTGTCAAGAATATGACTGGTTACTTCAAAGGTCACTTTTTAGTATT
CTGAGGACTTGATTTAGACATTCTCTAAGGTGGAGAGAGCAGATAAACTC
GATAACCCAAATTTATCTGGTCACCGGTCGTGGTCGTCATTTCTGGTCGA
TGTTTAGAAACTCCCTAAAAATGCTTATGACAGCTATGGTGTTACATAAT
GAATACTCTGTTTTTTAAAGGTATGGTATGCAAATGTTGAGTTTACGCCC
ACAGGAGAAAACTTTACGATTNTCATTTCTGGTCGATGTTTAGAAACTCC
CTAAAAATGCTTATGACAGCTATGGTGTTACATAATGAATACTCTGTTTT
TTAAAGGTATGGTATGCAAATGTTGAGTTTACGCCCACAGGAGAAAATTT
TACGATTTGTGGGGGGAATTTGATCCACAAGAAATGGGTTTTAACAGCTG
CACATTGTATTAAGGATGAGATTGTACATAACCGAGTTGAATTAGGTGAG
TACACAAAAATTCATGATAAATTCATACTGCTCGTTAGCTATAGTATTTG
GTGTAAATAACATACCTATTTTGGAGGTCATTTCATTAAGTTATCAACTA
TTAAAGGGACATAAATGTTTTTTTTTTTACTTTTGATAGAAACATCCTTT
TCAGTTTAAATCTTTCCACGAGGAACGAAGTTTCAAAGAAAAATAGTCAA
ATCTTTACAATTCAAAAGCATAAAAAATAGGAAGAATGACTTTATCGTAA
GGGTTTAATTTAGTCCTTTTTAAACCATGGATTGTTACCGATTGCTAAAG
ATTAAAACGCTGCAGACCGCTGCTTTTCCAATAGGTGAACACGTGAGACA
AATCAGAGGTGATGGGACACAGTTAGCACAAGTAAAAAAGATAATTCTAC
ATGAAAGCTTCAATAAACCACACAGTTTCAGCTATGACTTCGCCCTACTG
GAACTTGAAACGGAAGTGGAAATAACGGATAGAGTTCGCACTATTTGTCT
ACCAAAGAAATATCAACAAAGTGAGAATCATTTCGATAATGATGAATGCT
ATATTACTGGCTGGGGAAAAATGCAGAATGACAATCCAAAAATTCCAAAA
CATGGGGTATGTATTTAATGAAGAAATTGTAGGAAAAAGAATAATTACAT
AATGGGCTGTTCCATAAAAATTTCCATACAGGAGGTGAAAACAAGTTTCT
TGGAAAAGTGTAGATACCCCCTGGAAAATGGCAAAATTTGCAAAAGAACC
CTTGGAAAAAAATTATTTTCATGTCATAAAATGATGGTGGACGAACTAAA
ATCAGTTGTTCACCCCTTGAAAATTCAAGAATAACTTTTTACCCATGGAA
AAATGGAAAAAACACTTCTTTAGACCCCCTCGAAATGTTCGTCCATCAAA
AATCGAAGAAATAAATTACTCTGTAAGGGCCCCTTTTTCACTAGAAATTT
GGTCTCTCTAAGGGTTGGGTATCAGAGGTCCGGTCCACACATACCCGACA
TTCTCCCAACCCTACTACCCCCCTCATATCTAAATTAACCAAATTTTTTA
TTGCGCAGACTTTGCAAGAAGCAACTGTTAGAGTGTACACAAAAGAAGAG
TGTTTAAACGATCGGGGAAATAACAGAATCGATGACAGTATATTTTGTGC
CGGATATCGTCGAGGTGGAAAAGACACGTGTAAAGGAGACAGTGGTGGTC
CCTTACAATGCAAAGATGGAAATAGATGGATTCTCTGGGGTGTTACTTCT
TTTGGAAAGAGACCATGTGCATCACCTGGTAAAGCTAGTGGCTATGGGAG
AGTTACCCACGTTTTGGATTGGATTGAGGAGAAAACTGGAATAACCTTTT
AATTATTTTTGCTTTGTTTTGCTACAAAGGTATTGCAAAAAGTTTGTTAA
GAAAAACTTGTTGGAGTCATGCGGGTTACATATTTCGACCAGGCACAATA
ATGGCATCATTACAATTTCATATCTAGACTTTCACTTTAACCACATATTT
TTCAGATTTTTCAATTCTTTTAAAACTTTAGTTTAGCCAATGAAAGCGTG
CAGTGTTGAATAAAATATTTATCTTTTGATGTCTTTTTGGAGGTCCGGGG
CCACTTGTAACATCTTTCATCAAAATGAAATATAAATAAGTGGCAGTTTA
ATTGATAAACTTTGTTTCAAGTGACCCACCAGATTTAATGAAAATCGATG
GATATAAATTTGTCTATCATAAACTAAAATTTTTGACTAGACTATCAAAA
TGAAACTTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040492XLOC_040492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064565-exon-scaffold_419-1575043694:280733..280850TCONS_00064565-exon-scaffold_419-1575043694:280733..280850Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1575043694:279636..279893TCONS_00064565-exon-scaffold_419-1575043694:279636..279893Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1575043694:278910..279170TCONS_00064565-exon-scaffold_419-1575043694:278910..279170Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1575043694:277726..277977TCONS_00064565-exon-scaffold_419-1575043694:277726..277977Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1575043694:277010..277267TCONS_00064565-exon-scaffold_419-1575043694:277010..277267Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1575043694:276307..276561TCONS_00064565-exon-scaffold_419-1575043694:276307..276561Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1575043694:275627..275884TCONS_00064565-exon-scaffold_419-1575043694:275627..275884Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1575043694:275347..275422TCONS_00064565-exon-scaffold_419-1575043694:275347..275422Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1575043694:274056..274194TCONS_00064565-exon-scaffold_419-1575043694:274056..274194Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1575043694:273445..273716TCONS_00064565-exon-scaffold_419-1575043694:273445..273716Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1575043694:272288..272992TCONS_00064565-exon-scaffold_419-1575043694:272288..272992Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1510915933:280733..280850TCONS_00064565-exon-scaffold_419-1510915933:280733..280850Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1510915933:279636..279893TCONS_00064565-exon-scaffold_419-1510915933:279636..279893Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1510915933:278910..279170TCONS_00064565-exon-scaffold_419-1510915933:278910..279170Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1510915933:277726..277977TCONS_00064565-exon-scaffold_419-1510915933:277726..277977Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1510915933:277010..277267TCONS_00064565-exon-scaffold_419-1510915933:277010..277267Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1510915933:276307..276561TCONS_00064565-exon-scaffold_419-1510915933:276307..276561Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1510915933:275627..275884TCONS_00064565-exon-scaffold_419-1510915933:275627..275884Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1510915933:275347..275422TCONS_00064565-exon-scaffold_419-1510915933:275347..275422Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1510915933:274056..274194TCONS_00064565-exon-scaffold_419-1510915933:274056..274194Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1510915933:273445..273716TCONS_00064565-exon-scaffold_419-1510915933:273445..273716Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1510915933:272288..272992TCONS_00064565-exon-scaffold_419-1510915933:272288..272992Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1491911889:280733..280850TCONS_00064565-exon-scaffold_419-1491911889:280733..280850Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1491911889:279636..279893TCONS_00064565-exon-scaffold_419-1491911889:279636..279893Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1491911889:278910..279170TCONS_00064565-exon-scaffold_419-1491911889:278910..279170Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1491911889:277726..277977TCONS_00064565-exon-scaffold_419-1491911889:277726..277977Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1491911889:277010..277267TCONS_00064565-exon-scaffold_419-1491911889:277010..277267Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1491911889:276307..276561TCONS_00064565-exon-scaffold_419-1491911889:276307..276561Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1491911889:275627..275884TCONS_00064565-exon-scaffold_419-1491911889:275627..275884Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1491911889:275347..275422TCONS_00064565-exon-scaffold_419-1491911889:275347..275422Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1491911889:274056..274194TCONS_00064565-exon-scaffold_419-1491911889:274056..274194Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1491911889:273445..273716TCONS_00064565-exon-scaffold_419-1491911889:273445..273716Clytia hemisphaericaexon
TCONS_00064565-exon-scaffold_419-1491911889:272288..272992TCONS_00064565-exon-scaffold_419-1491911889:272288..272992Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:272288..280850 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.265272	0.214355	0.316637	0.444057	5.26559e-07	0	0.893175	1.28291e-07	1.44969e-06	0	0.617839	1.81603e-09	0	0	0.058646	0.0502649	1.10837	2.0141	0	0.0183581	0.0745541	0	0	0.0454365	0.0576662	0.0760589	0.0360492	0.124389
Blast
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BLAST of TCONS_00064565 vs. Swiss-Prot (Human)
Match: FA11 (Coagulation factor XI OS=Homo sapiens GN=F11 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 8.414e-37
Identity = 92/224 (41.07%), Postives = 124/224 (55.36%), Query Frame = 3 
Query: 1785 ICGGNLIHKKWVLTAAHCI----KDEIVHNRVELGEHVRQIRGDGTQLAQVKKIILHESFNKPHSFSYDFALLELETEVEITDRVRTICLPKKYQQSENHFDNDECYITGWG------KMQNDNPKIPKHGTLQEATVRVYTKEECLNDRGNNRIDDSIFCAGYRRGGKDTCKGDSGGPLQCKDGNRWILWGVTSFGKRPCASPGKASGYGRVTHVLDWIEEKT 2426
            +CGG++I  +W+LTAAHC       +I+  RV  G   +    + T    V++II+H+ +    S  YD ALL+LET V  TD  R ICLP K  ++  + D   C++TGWG      K+QN         TLQ+A + + T EEC      ++I   + CAGYR GGKD CKGDSGGPL CK    W L G+TS+G+  CA   +   Y  V   +DWI EKT
Sbjct:  415 LCGGSIIGNQWILTAAHCFYGVESPKIL--RVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAES-GYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTD---CWVTGWGYRKLRDKIQN---------TLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGE-GCAQRERPGVYTNVVEYVDWILEKT 622

HSP 2 Score: 28.8758 bits (63), Expect = 8.414e-37
Identity = 23/101 (22.77%), Postives = 36/101 (35.64%), Query Frame = 1 
Query: 1447 LKHSTEINIARNFKECQYKCEAKSFCKSIVYNKKDQGCYLMKDTSSTVPRDYSEPCKTTTHPEDYLYAEIIEQCGI----SKVIQKRIIGGQDADVGEYPW 1737
            L    +I  A++ + CQ  C     C+   Y      C   K            P K   H    +    +  C +    +  I+ RI+GG  +  GE+PW
Sbjct:  302 LGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKIL-HGRGGISGYTLRLCKMDNECTTKIKPRIVGGTASVRGEWPW 401
The following BLAST results are available for this feature:
BLAST of TCONS_00064565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FA118.414e-3741.07Coagulation factor XI OS=Homo sapiens GN=F11 PE=1 ... [more]
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