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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064557 ID=TCONS_00064557|Name=TCONS_00064557|organism=Clytia hemisphaerica|type=transcript|length=2276bp
TCTCGATGGGCCAGGTCCCTTTGTCAGAGAAGCTGGGTGTTGTCTCGCCT
ATTCACTGTCAATTGTAAAGATCAACGATGATCACGCCTTCGAATTATCG
TCAGCTCTCCTACACGTTGTCGCTGAACTCTCCTATAACTCCAAAGCTCG
TGAATACAGTATCGCTGCACTACAAAATTTCACCAAAAAGTTTGACCAGG
TAGCAgaattggcacagatgatcGTCCCAGATGTTTACGCCAGTGAACTT
GAATCACCCATTTCTGTCTGAGGTGTGAATACATCGAATGAAATGGAGAA
AAAGAGATTGAGTATACTGAACATAGACCGATGGAAAGCTGTTCTTAATA
ATTGCTCAAAGTAGTGCTTTCATTACCACCGGCTATTATGTATGGATAAT
GTAGGGATATTACTTTGCCAAAGAACgaaagaaaatgatgaaaaggatga
caagcaaaaaagaaagatcaaaggaGCTTTTACAATCCTGTTTTTTGCAG
AGACAATTGATTTTGTGTCTATTACATCAGATACTTTGTTGGAAAATATT
TGGTCAAAGTCAACACTGGACGACCCTCTTATATCAGATGAGATATTTTA
TGAATCGTGCAAGTGCCAAAAATAATTATAGTGAGATTTTATCACGGCGC
CCCCTCCCTCCTTCAACCGCCCTACCCTAACCTTTACCCATCTGCCCATC
TTTTCTCATCTCTTTACTTCTCCCTGTTTTTAAATCCCTATCTGACCcat
tctttttttgcttttattcttttattgtCTTGATACATGTGACTGCGAAA
TAATTTAGCAGTCCCTATTAGTAGTACCCTTAATAAACATTATTGGTATA
TTATTGAAATTTAATACGTTTCCTATGGAAAATTATTGGCCCAATTATTT
TCGAGGATAATCTTCACTAGAATGGcttgatttttatattttggccTCGA
AAGAGAGAGCAGGGTGTATTCGTTGCCTTGAAAGTATcccatttttagaa
attttgaatatcaaaaTTCTATACTATTCGCTATTAGGCTGTGGTCGTTA
CACAATAGTAGACATTTAAGGATAGTGTATATTTGCTGCCTACCTCTAAG
GCATTAGCTCGTGGGAGGTCGTTCAAGTGAATAAAGTAATATTTTTACCC
CCCTTTTTCTGGACGGAACTGTGACATTGTTTTCTGTAcatgtgattttt
ttataagcctCCTGAAGTTTTAAGCCAAAGAATCTTCCTAACTTGTTCTG
AAGATTTTAGCCATCAAAAgctaaaaattataaatattgTTCTTATCTGA
AAACATGTTAGCAGGTGTTTTTTTATCATACcctgttttgatgtggtttt
tcaAAGTCAACGTAAAAAAAACCATGATAGATCGCTTGTTGTGATAAAGT
TTAAATTTAActcaaattttatttcttttgcgCACGAAGACTTATCTTAA
AACCACGATTGATGCAAAGAACCCTGATTTTAAATATTGTAATTTTACAA
GCGTTTTCTTGGTGTCATGATTGCTATTACCAATGCGCTTTCTCATGTAC
GGTAtgcattttttgtccattttttagtttacatttttaaaagattttat
tttttcgttttttttcttcttgcaTTTGTCTCTATTGAATTATGATATAA
TTTTATCATAATGTAATGTTCCAAaagaatttattatttattacttTCAA
TTATTTTCGGATCATATACAGTGTGTCCGGGAAAAAAACGGGACAGAATT
TATGTATGATTAAAATCGTCATTATTTATTCCAAAACCGTCACCTTAGga
attaaagggataatcagatggttcgAGATATTTTGTCTGTAAATTACTTC
AAATGTTCTGAGCGAAACCTCCAAATCTTTTTGTCCAACTCTTTTCATGC
TAAAGATTTCAACctatctgattatccctttaaatatcttttgattgggT
TAATTTAACTACTGAATTTGTCCTATTTTAGATAAATTCAAACTCAGTAA
GATAAATGATTTTCGAGGATTTTACTTCGTATGAATTCTGTTCGGACATT
CAATGTGTCCGGTTAATAGGcaacaaaaaatattcatttttgctgttttc
CCCATTCTTTATTGTAAATATTCATAAAAAGATTTTATGTTTGAACTTTt
atgttgtattttttttaattctaatttTATGTTGTGTTTGAAATGTtatg
aaaaagtttgaaaaataaaagcctaaaataatttttggtaTTCGATATAG
GCGTGTTATTTTTTAAGGGTAGGCTC Run BLAST on NCBI transcript from alignment at scaffold_419:181432..188312- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064557 ID=TCONS_00064557|Name=TCONS_00064557|organism=Clytia hemisphaerica|type=transcript|length=6881bp|location=Sequence derived from alignment at scaffold_419:181432..188312- (Clytia hemisphaerica)
TCTCGATGGGCCAGGTCCCTTTGTCAGAGAAGCTGGGTGTTGTCTCGCCT
ATTCACTGTCAATTGTAAAGGTAACTGTTGTCTACACTTAGCATATATAT
AGGTCGGTCTGGCGATAAAAGAAGCATGCCAAAGAGAGGTATCAAATCAA
CGTCTACACTAGTTTAAGCTAAGTTCTAACGATAAACATGAGCATTAACG
CGAATTCATATTAAAAAGTACACAGCTAGTTACCAAACCCTTATATTTTT
TCGTGGGGCACCCACTATCTACAAAAAAAATAAGAACCTTTCGAAGGGTT
CGAATGTTTATGAGCACCATTTGGGCTTTCTTTTTTCCCAAGTTGTTAAC
ACTAGACAAAGATACATTAGCATGGCGTTCTAAATTATTTTAGAATTTTA
AGATTTGTTTATGCGGGATGGAGAAACTTTACCCAGGGTATATATGAAGC
TCAGTGCGTGTTAGGCGTTTAAACTTTCCCATTTTTCTTCTCTTCTGCCA
GATAAACGATGACCACGCCTTCGAATTATCGTCAGCTCTCCTACACGTTG
TCGCTGAACTCTCCTATAACTCTAAAGCACGTGAGTCACCAGGTTTTTCG
ATTATTATTTTTTGTAAGTCAATGAAGTGCATTTTAAGTAGCCCAGCATC
GCTTGCCGCTGTCCGTCCGTGGTGCTGTATCTCCGTTTTGAAGAAGCAGC
GCTTTCTTGATTCAAGTTCGTTTTGGAAGAAACTGCGCTTTGTAACAATC
AGTACAGAGTGTACGCATTGTGAAAAAACATTCTACTATCGCTAATGCTG
ATAAGCCTTTATGCCGTCTTGGCTTTTTTTCTTGTTGTCATTTTACTACG
ATGTCCATAACTGACTGAATCAATTCGTGTACAATTTATTTCGAGCTCAA
ACCCATCGGCACATTGAAAACTGAAAACCGAATAGTGCTTTCTTTCATCT
TGTTTTCATCTTCTTTTTTGACAGGTGAATATAGTATCGCTGCACTACAA
AATTTCACCAAAAAGTTCGATCAGGTAAAAATTATCTGTCTATATTAATC
TTTCAAGATTTTAAGTACATAATCCTCGTGGCTCAAGTTTTATGGAATTT
TAGAATTTCTTGTATTGCCCTCTTACAGATCACTCAACATTGTCTGTCCT
GTTTACGTCTGATCTTTTAACAAAACATCGGCATCTCATGGTTTTCAAGA
ATTTTGAAGACGTATTTCTTCCTGTTAAACTTTAACCTAGTTGGCTCACG
CTTTTAGATGTAGTACATACTTTCGTAAGAATGACTCTAGAGATATAACT
CCATTGTATTGACTGATTTCTATTGACAGGTGGCAGAATTGGCACAGATG
ATCGTCCCAGATGTTTACGCCAGTGAGCTTGAATCGCCCATTTCTGTCTG
AGGTGTGAATACATCGAATGAAACGGGGAATAAGAGATTGAGTATACCGA
ACATAGACCGATGAAAAGTTGTTCTCGATAATTGTTCAAAGTAGTGCTTC
CATTACCACTGGTTATTATGTATGGATAATATTTTCCTGAATTTTCTATA
TTACTTTGCCAAAGAACCAAAGAAAATGATGAAAAGGATGACAAGCAAAA
AAGAAAGATCAAAGGATCTTTTACAATCCTGTTTTTCGTGGAGACAATTG
ACTTTGTGTCTATTACATTAGATACTTTTGTGGGAAAATATTTGGTCAAA
GTCAACACTGGAGCCTCTTATTTCAGATGAGATATTTTATTAATCGTGCA
GGTGCCAAAAATAGTTACAGTGAGATTTTATCACTGCGCTCCCTCCCTCC
TTCAACTCTCCGCCCTGCCCTAACCCTTACCCGTGCCGCCCATATTTTCT
CGTCTCTTTACTTCTCCCTGTCTTTTAAATCCTTATCCGACCCATTCTTT
TCTTTACTTTTATTGTCTTGGTACATATGACTGCGAACTAATTTAGCAGT
CTTTATTAGCAGTACCCTTAATACACATTATTGGTATATTAATGAAATTT
AATACGTTTCCTATGGAAAATTATTGGCCCAATTATTTTCGAAGATAATC
TTCATTAGAATGGCTTGATTTTTGTATTTTGGACTCAAAAGAGTGAGCAG
GGTGTATTCGTTGCCTTGAAAGTATCCCATTTTTAGTAATTTTGAATATC
AAAATTCTAAACTATTCGCTATTAGGCTGTGGTCGTAACACAATAGTAGA
CTTTTAAGGATAGTGTATATTTGCTGCCTACCTCTAAGGTATTAGCTCGT
GGGAGGTCGTTCAAGTGAATAAAGTAATATTTTTACCCCCGTTTTTCTGG
ACGGAACTGTGACATTGTTTTCTGTACATGTGATTTTTTTATAAGCCTCC
TGAAGTTTTAAGCCANTTTCGAAAATTATTTTCTGGCTCCCCCTCTCTCC
CTTTTGAAAGGGGGGAGTAGGATACTATGTATCTGTTCATACATTATTAA
GAAGATATATCTTGACGTTTTTAGGACCCATATAGAGATTTCTTCCCATC
TTTTTGCTCTAATCCTTTGGGATGAAGGGTTTTCGAATTTAGTAATTTTT
GAACCCTTTTTAAGAGAGTGGATTGGTTTTTGTAGGCCTTATAGTTTTTT
TTAGAACTTTACGCTTATCTTTTACCTAAATGATTCACATCTGACATGTG
ATTAACAATTAATTGTTACATTACATTTTCACTTTTTACTTTCAGTTAGC
AAACCTACTCAGTGTATACGAACTACGTAATCATCTACTGGCTATCGATT
CTATGCTTCGGATACTGGTCAATCTCACTGTTTCAAGTATTCTCGATGGA
CCAGGTCCCTTTGTCAGAGAAGCTGGATGTTGTCTCGCCTATTCACTCTC
AATTGTAAAGGTAACTGTTGTCTACACTTAGAATATATATAGGTCGGTCT
GGCGATAAAAGAAGCATGCCAAAGAGAGGTATCAATTCAACGTCTACACT
AGTTTAAGCTAAGTTCTAACCATAAACATGAGCATTAACGCGAATTCATA
TTAAAAAGGACACGGTTAGTTACCAAACCCCTATATTTTTTCGTGGAGCA
CCCACTATCTACAAAAAAAACAAGAACCTTTCGAAGGGTTCGAATGTTTA
TGAGCACCATTTGAGCTATCTTTTTTCCCTTGTTGTTACCACTGACCACT
AAAAGCCCAAGACAAAGATACATTAACCAATTTTGATCTGAGATCTTTAG
AAAGTGGTATACGCAAAGAAGCCATTGTATTTTTAAAGATATTCAATGTC
AAACGGCAAAACATCATCAAAAGTCTTCAAGAATAAAAACAGATCTAGCG
TTCTCGATGCCTTTACCCTACTATTGAGTAGTGCTACCATTAGGCTACCA
CTTACAAAAAAACTCCGATCAAAGATTAGCTTATGCGGGATGGAGAAACT
TTACCCAGGGTATATATGAAGCTCAGTGCGTGTTAGGCGTTTAAACTTTC
CCATCTCTTCCACCAGATCAACGATGATCACGCCTTCGAATTATCGTCAG
CTCTCCTACACGTTGTCGCTGAACTCTCCTATAACTCCAAAGCTCGTAAG
TCACTGGTTTTTCGAATTGTTATTGTTTGTTCTTTTTGTAAGTCGATTGG
ATTTGAGGTGCGTGTTCAGTCATTTTACCAACAATGTATCATAACTGACT
CGATCAATTTATGCACAATTTTGAATTTCAACCCGTTGGTGCATTAAAAC
CCTTTTTACTGAAAAGTGTTCGGAAAACTTTATAATATAAATAACAGCAA
ATCTGCGAGGAAAAAAATACGGTATTTATAAAAGCTTTCACACACAAATG
ATGCTTATCCTTGTTTTTCATTTGATTTGGCAGGTGAATACAGTATCGCT
GCACTACAAAATTTCACCAAAAAGTTTGACCAGGTAAAAGCTCTATATCT
TTACAATTTGTTGAATATTTCACAAAAAGAATGAAAAAGGCCAGGGGGGG
TCCATGTACAAAACAACGGCATGTATCAGTACTTTGTGGCAAATTTCGAT
TTTAGACACCACTCCACCCCTATAGTAAAAAAACTGCAAAATACTATCCA
GCAAACTCCCAAATATACTCCAATACACCCTGTTTAGTACAGAATACTAT
CCAGCAAACTCAACACTCAAACCCCAAAAAACCTCATGTATATTACACAG
ATGCTAAGCAGATAATACGAATTTATACCAAACAGCAAAAAAAAATTCAA
AACACCCACCCACCCCATGATACATGCCGCTTTCTTGTACATAGACCCCC
CCGCCCTGAAAAGGCTCCAGTTTTATGGTACGGAATTTACGGAGCTCTAC
AGGTCACCCAAAATCTAAGACCAGCCTAGTCTGTCTTGTTCTTTTCTGTT
TTATATCAGATTTTTGAACAAAATATCCGAATTCCCACAAAATTGCAACA
ACAGGGTCGGCTAGTAAGCCTGTTAGACGAAAACCGCTTTCTAATTGCGC
CTATCAACCCTTAAAGCGTAAGGTAACTTGGTAAGAGTTTACCAGGAAGA
AATGAATTTTGGCATCATTTTCCTGATAAACTCCAACCCATTCTCCTCGC
ACTTTTAGGGTTTACAGGTGAATATAGAGAACTATGAAGTTCTCATTGCT
CTAATTTTAATCATACAATGGATTCTCCATAACTCGAACACTTAGTTTAT
TTGTTCGACTTAAGTTTGAGTTAAATTTCGAGTTATAGAGGGACCATAAA
AGCATTGTTGACTGAAGGGACCATAAAAATTGTTCGAGTTATAGAGGTTC
GAGTTAAAGAGAATCAACTGTACCTTCATTGTAATGACCGATTTTGGTTC
ACAGGTAGCAGAATTGGCACAGATGATCGTCCCAGATGTTTACGCCAGTG
AACTTGAATCACCCATTTCTGTCTGAGGTGTGAATACATCGAATGAAATG
GAGAAAAAGAGATTGAGTATACTGAACATAGACCGATGGAAAGCTGTTCT
TAATAATTGCTCAAAGTAGTGCTTTCATTACCACCGGCTATTATGTATGG
ATAATGTAGGGATATTACTTTGCCAAAGAACGAAAGAAAATGATGAAAAG
GATGACAAGCAAAAAAGAAAGATCAAAGGAGCTTTTACAATCCTGTTTTT
TGCAGAGACAATTGATTTTGTGTCTATTACATCAGATACTTTGTTGGAAA
ATATTTGGTCAAAGTCAACACTGGACGACCCTCTTATATCAGATGAGATA
TTTTATGAATCGTGCAAGTGCCAAAAATAATTATAGTGAGATTTTATCAC
GGCGCCCCCTCCCTCCTTCAACCGCCCTACCCTAACCTTTACCCATCTGC
CCATCTTTTCTCATCTCTTTACTTCTCCCTGTTTTTAAATCCCTATCTGA
CCCATTCTTTTTTTGCTTTTATTCTTTTATTGTCTTGATACATGTGACTG
CGAAATAATTTAGCAGTCCCTATTAGTAGTACCCTTAATAAACATTATTG
GTATATTATTGAAATTTAATACGTTTCCTATGGAAAATTATTGGCCCAAT
TATTTTCGAGGATAATCTTCACTAGAATGGCTTGATTTTTATATTTTGGC
CTCGAAAGAGAGAGCAGGGTGTATTCGTTGCCTTGAAAGTATCCCATTTT
TAGAAATTTTGAATATCAAAATTCTATACTATTCGCTATTAGGCTGTGGT
CGTTACACAATAGTAGACATTTAAGGATAGTGTATATTTGCTGCCTACCT
CTAAGGCATTAGCTCGTGGGAGGTCGTTCAAGTGAATAAAGTAATATTTT
TACCCCCCTTTTTCTGGACGGAACTGTGACATTGTTTTCTGTACATGTGA
TTTTTTTATAAGCCTCCTGAAGTTTTAAGCCAAAGAATCTTCCTAACTTG
TTCTGAAGATTTTAGCCATCAAAAGCTAAAAATTATAAATATTGTTCTTA
TCTGAAAACATGTTAGCAGGTGTTTTTTTATCATACCCTGTTTTGATGTG
GTTTTTCAAAGTCAACGTAAAAAAAACCATGATAGATCGCTTGTTGTGAT
AAAGTTTAAATTTAACTCAAATTTTATTTCTTTTGCGCACGAAGACTTAT
CTTAAAACCACGATTGATGCAAAGAACCCTGATTTTAAATATTGTAATTT
TACAAGCGTTTTCTTGGTGTCATGATTGCTATTACCAATGCGCTTTCTCA
TGTACGGTATGCATTTTTTGTCCATTTTTTAGTTTACATTTTTAAAAGAT
TTTATTTTTTCGTTTTTTTTCTTCTTGCATTTGTCTCTATTGAATTATGA
TATAATTTTATCATAATGTAATGTTCCAAAAGAATTTATTATTTATTACT
TTCAATTATTTTCGGATCATATACAGTGTGTCCGGGAAAAAAACGGGACA
GAATTTATGTATGATTAAAATCGTCATTATTTATTCCAAAACCGTCACCT
TAGGAATTAAAGGGATAATCAGATGGTTCGAGATATTTTGTCTGTAAATT
ACTTCAAATGTTCTGAGCGAAACCTCCAAATCTTTTTGTCCAACTCTTTT
CATGCTAAAGATTTCAACCTATCTGATTATCCCTTTAAATATCTTTTGAT
TGGGTTAATTTAACTACTGAATTTGTCCTATTTTAGATAAATTCAAACTC
AGTAAGATAAATGATTTTCGAGGATTTTACTTCGTATGAATTCTGTTCGG
ACATTCAATGTGTCCGGTTAATAGGCAACAAAAAATATTCATTTTTGCTG
TTTTCCCCATTCTTTATTGTAAATATTCATAAAAAGATTTTATGTTTGAA
CTTTTATGTTGTATTTTTTTTAATTCTAATTTTATGTTGTGTTTGAAATG
TTATGAAAAAGTTTGAAAAATAAAAGCCTAAAATAATTTTTGGTATTCGA
TATAGGCGTGTTATTTTTTAAGGGTAGGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064557-exon-scaffold_419-1575043694:188243..188312 | TCONS_00064557-exon-scaffold_419-1575043694:188243..188312 | Clytia hemisphaerica | exon |
| TCONS_00064557-exon-scaffold_419-1575043694:184768..184846 | TCONS_00064557-exon-scaffold_419-1575043694:184768..184846 | Clytia hemisphaerica | exon |
| TCONS_00064557-exon-scaffold_419-1575043694:184430..184479 | TCONS_00064557-exon-scaffold_419-1575043694:184430..184479 | Clytia hemisphaerica | exon |
| TCONS_00064557-exon-scaffold_419-1575043694:181432..183508 | TCONS_00064557-exon-scaffold_419-1575043694:181432..183508 | Clytia hemisphaerica | exon |
| TCONS_00064557-exon-scaffold_419-1510915933:188243..188312 | TCONS_00064557-exon-scaffold_419-1510915933:188243..188312 | Clytia hemisphaerica | exon |
| TCONS_00064557-exon-scaffold_419-1510915933:184768..184846 | TCONS_00064557-exon-scaffold_419-1510915933:184768..184846 | Clytia hemisphaerica | exon |
| TCONS_00064557-exon-scaffold_419-1510915933:184430..184479 | TCONS_00064557-exon-scaffold_419-1510915933:184430..184479 | Clytia hemisphaerica | exon |
| TCONS_00064557-exon-scaffold_419-1510915933:181432..183508 | TCONS_00064557-exon-scaffold_419-1510915933:181432..183508 | Clytia hemisphaerica | exon |
| TCONS_00064557-exon-scaffold_419-1491911889:188243..188312 | TCONS_00064557-exon-scaffold_419-1491911889:188243..188312 | Clytia hemisphaerica | exon |
| TCONS_00064557-exon-scaffold_419-1491911889:184768..184846 | TCONS_00064557-exon-scaffold_419-1491911889:184768..184846 | Clytia hemisphaerica | exon |
| TCONS_00064557-exon-scaffold_419-1491911889:184430..184479 | TCONS_00064557-exon-scaffold_419-1491911889:184430..184479 | Clytia hemisphaerica | exon |
| TCONS_00064557-exon-scaffold_419-1491911889:181432..183508 | TCONS_00064557-exon-scaffold_419-1491911889:181432..183508 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_419 | supercontig | scaffold_419:181432..188312 - |
Blast
The following BLAST results are available for this feature:
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