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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064536 ID=TCONS_00064536|Name=TCONS_00064536|organism=Clytia hemisphaerica|type=transcript|length=202bp
GCATGTAGCATTGTTGGTGATCTAAAGAATGGTCGTGTTGTTCAAATTGA
GAATGCTAAGATTGACAAATATCTAACAGGCGAATTCGGTAGACTGGAAC
AGTTTGCTCCAGCTGCATATCGATGGTGGATGAACATAAAATATAATGAA
ACTGCCATGAAATACAAATTTCTTTCCGAAGGAACTTATTCACCTTATCG
TA Run BLAST on NCBI transcript from alignment at scaffold_419:32085..36698+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064536 ID=TCONS_00064536|Name=TCONS_00064536|organism=Clytia hemisphaerica|type=transcript|length=4614bp|location=Sequence derived from alignment at scaffold_419:32085..36698+ (Clytia hemisphaerica)
GCATGTAGCATTGTTGGTGATCTAAAGAATGGTCGTGTTGTTCAAATTGA
GAATGCTAAGATTGACAAATATCTAACAGGCGAATTCGGTAGACTGTAAG
TATAAAggaattttggcggggatttcaTTTCGCGGATGGCAGAAAAAAGA
CTTTTCAGAGGAAATTTGGATATTGCGTAAATCCTATCAAATAGGCAAAG
CTTGAATTTTTGATGAATTCGTCAAAATTTTCAACTGTCTAGATATTTTC
GTACCAAAGTAAATGTAGGCGAAACAAACTTAATACGTTGCGCCCTATAG
TATCTTTTTTCATGGTGACGATAGATTCTAAAAATCGATTATCCAATGTT
AAAAGATCGTGTTTAAGGCAAGAAAATTAAAGTTGTTCTGACCTGTGACC
ATTGAATTCCCAATTAAGTCTCATTATCTTTTTTCATGGTGACGATAGAT
TCTAAAAATCGATTATCCAATGTTAAAAGATCGTGTTTAAGGCAAGAAAA
TTAAAGTTGTTCTAACCTGTGACCATTGAATTCCCAATTAAGTCCCAAAG
GGGCTAGCAGTATAATGATGTCATATGcatagaaaaaaatacaaactagc
GACCAACTATGACAATCTGTAATTCAAAAAAGGTCAATGTacactgagaa
aaaaaaaacaggactaAAAAATAACAGTAGTACAGAGAATAAAGGATAAA
AGGAATGCATAAGACACAAAAGGAAGTGATAAACTGAAGACCGAAGTCTG
AGTTCAGGTGCGGTATAAGCATCCTCTGCCACTTTAGAGTCAAGAAATCT
TACTCAAGcaacgaaaaaaaaagaaactttaaaattAGCTCTGGATTTAG
AATGACGTAATAGATATTAGATCAGATATTAGATTAGATATTAGTTTTCA
AGCGAAAGatattatttatatatttattcaatataaagttatgatacaaa
gttaataagtgNNtatagactggatggcgcgattaagtggcccggtagta
tatggtaatatgcttttgcttaggcggactgtaaaacagtccgccagatt
ttagttgtttgtTGTTNCGACTTCTTGTTTGTTTATGGGGTTTATCTCTG
TATGAACGTGTATTATATGAAACGGGGCTACttcagtaaaaataaaatct
ttaattgTTAATTTGTGGATTAAGTTTTCAAACGCAGGTAATTCTATGCA
CATTTTCGAAAAGTTAGGCCATNccaagtagttttattgttatttggatt
tttaatattttttttcaaaatggcgactttgccaaatgctcctagtctac
ttcactggactcagcgtcataagaaattatcaaaaagcaaagttcagcta
aaagtagactctagtctaataaGTGATTGACGTCTGAAAACGCTGCGTGT
ACGTCATTTaagggccaaaatgacgtcatcaacacaCGATTCACAGTATT
TTAAGTTTTGATCCGTTTTAAGTtataaattttagatttttggaatttgt
cTGGGATTTGGGATATTTGGAATAAAATTACGAGATTCTTTTGAGCAGCG
GAAAGATAGCCTCGGCCCCTTAACATAACTGGTGTGCTTGGGGCGTCTAT
AAagaatccctttcgctttgcaaacacgagactcgttctccgtgcgtaac
tTCTTTTACCATTGATCTGgcatttgtgtgaaaaccacacgGGTCACGTG
TATTGGATAAGAAATAAGTGGATTCATTTCCCATCTCAGGGTTTCAAATC
TAGCCCCTTTTCAGCTTTGAAATAAATGGCTGTGACGCcacattttattg
attttgttatAACAATGAAAAGTGATTTCGAACAAATTGATTACTTGATT
TTTTGCCCAGCTTTTTTTAGCATATCGATCAGTGTTTATGTCCGTTTTTT
GAAGAAGCAGCGCTTTGTCAAGTTATTCATTTCGACTTGTTACACAATCA
ATTCAAATTATCATTGcgaaaaaaacatttgactATTGCTATATCGCCGT
CATCTTCATGCAGCTTCGACTTCTTGTTTGTTTATGGGGTTTATCTCTGT
ATGAACGTGTATTATATGAAACGGGGCTACttcagtaaaaataaaatctt
taattgTTAATTTGTGGATTAAGTTTTCAAACGCAGGTAATTCTATGCAC
ATTTTCGAAAAGTTAGGCCATCTGAAAAGATGTCCTGAAAGCTCTCGAGC
AATAGTCCAGCAGTCGAATTgcattcacttttttcaaaaaaattgagata
taaatcagtgaatttgctgacagtcaaattatACAATCTGTCTTCTGTCT
TAGTACTTAGAAATtcagattgattcatttttcgatcCAAACAGTACAGT
agaacaatgattgaatatggacaaaagtgattgttgttggtggttgaatt
ggcaacaaaattccactgtaactaaattaattcaacaatcgtcattcaac
atactctactcccaacaagaatgcttaaagatcctgtgttattatggtac
ttcgacagtgagtacaaatatttttttctttgtgtacttttataagactt
ggttttattaatcttttatgttttaacctgtgttcttgttgatacttagg
cggtcatcgaaaaaatgctctgttcgcgtggcaactggtgttaaaaatgc
atgcgggcggacgggcaGTCAAAACAATTCCcaggtttttttaaatcacg
tCAGTAATTCAGGGGCGGGTGGTGTcacgagcaaaacaatttttcaatga
ccatcggagcaattgagaaaaaagctatactttgaaagaacaaattggtt
ttcccggatttttttccgcatctctgcaaatcagcagaaaatatcaagtc
ctgaatgtacgctatttcctgttaatacctgcttcctgctcatcaatatt
gcctcgttactgatactattaccaTGTTACGTTctatcatcttccatcct
ttacacgACGCTGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTTCCAAAAAAAGTGGACGGAccattttataatattttttg
ttttcggcgatccaaaaaatatctgtaATCTGATcagttaaaaagagtac
aatttATCTTATATTTTAAATGAAGCAATCTAatgtcactttgctacaaa
agtgccctgcgcttttttccaacacaaaaagtgcatttttttggTCATCG
ATTAACACATAAACCAATTATCAGATATTtcctcgtacaatatggaaata
tatcctcgttccggattttccgtatatatATTGTATGGACAacctcggaa
ctcgtaaaatatttctcatattgtactcgcaactgtccgataactattac
ttatcgTAAATTTAACTTATTTTATACTTCATATAACTTttatctttttg
taattttgaataGTATAaagcgagaccaatttaatttgttgttctacggg
cctgaccgaccctatttttgctaaaatcaaaaaaataataatagcgaatt
tccactaaaatatattttacacactagttatttgtaagaattaaacttga
ataaagctgaaaattaattcaagaaattgaaaattcataaaaagcattcc
atacactaaaattttattatgatcttcattgaagataaaaaaatagtgaa
tttttgatccagatactttttggaaaattttctcggtaccttaccaaccc
tgataaatgaaaaatttattcttattttgccgaccgaccgaccgacccat
atttttctaacaatctgtccgtagaacaacaaattaaattgctCTCGCCT
AACATAAACATTGCTTGcttttgagagaaaaataaatgacTGAGACTAAT
ACCACGTTTGAAAGATAATTATGAGCGACTTGATATAAGCTATGAATtgt
ctaaaatttgaaaatttctctccttggtaaaaaactgatttaTATATGTA
TTcagatattttatattttttatgaccatttttaacaatttaCCACCCGT
GAATTTTTTCGAAGGATTGTAACTTTTGATTAAAGGAATACCTTTCCCCC
CCTCAAGAGGAATGTTTAAAAAACGAACTgctattttttttgaaacagaa
ttcatattgatactTTCTCTACAGTAATAGGGAAATGAAATAACCATGGA
GAtaaatatagatggagataccNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTATAATCATGTGCCTTTTGATTCAGTCTTTCCCATTC
GAATCAAATTCATTTTCctccaaataaataaattctaaatCATTAAATTG
TCTTCAGGGAACAGTTTGCTCCAGCTGCATATCGATGGTGGATGAACATA
AAATATAATGAAACTGCCATGAAATACAAATTTCTTTCCGAAGGAACTTA
TTCACCTTATCGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064536-exon-scaffold_419-1491911889:32085..32179 | TCONS_00064536-exon-scaffold_419-1491911889:32085..32179 | Clytia hemisphaerica | exon |
| TCONS_00064536-exon-scaffold_419-1510915933:32085..32179 | TCONS_00064536-exon-scaffold_419-1510915933:32085..32179 | Clytia hemisphaerica | exon |
| TCONS_00064536-exon-scaffold_419-1575043694:32085..32179 | TCONS_00064536-exon-scaffold_419-1575043694:32085..32179 | Clytia hemisphaerica | exon |
| TCONS_00064536-exon-scaffold_419-1491911889:36592..36698 | TCONS_00064536-exon-scaffold_419-1491911889:36592..36698 | Clytia hemisphaerica | exon |
| TCONS_00064536-exon-scaffold_419-1510915933:36592..36698 | TCONS_00064536-exon-scaffold_419-1510915933:36592..36698 | Clytia hemisphaerica | exon |
| TCONS_00064536-exon-scaffold_419-1575043694:36592..36698 | TCONS_00064536-exon-scaffold_419-1575043694:36592..36698 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_419 | supercontig | scaffold_419:32085..36698 + |
Blast
The following BLAST results are available for this feature:
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