TCONS_00064508 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064508
Unique NameTCONS_00064508
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2053

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064508 ID=TCONS_00064508|Name=TCONS_00064508|organism=Clytia hemisphaerica|type=transcript|length=2053bp
GCGGTAGTCATGATGTCTGACTACTTAAAAGAATTGACTATAAATGACGG
TAAAAGTGAAATCACGAACAAACTGGACAACACTGTCACTCAAGCACTTT
CCAAAGCTATAAATTTCCCTGAATTTGTTGATTTTGACGAGGAAGATAAA
TCGTTGAATGAATTGATTCAATCTTATGCATGGATACAACCTGATGATCT
CAAGATTCAATTAGATCTACAAGACAAAAACACATTGTCTGGTTTGTCAG
ATGCTGTTCACTCATTGGCTATCATGACAACACGTGACAATAATGCGTTC
GAAATGTTGAAATGTCTCGTTAATTGTTGCAAACACGCGAATTACGCCAT
TCAGAAGGCGGGAAGTGGCGCCGATGATTTGTTGCCCACACTTATTTATG
TGGTGCTGAAGagCAATCCACCAAGACTTTATTCTCACTTAAAGTTCGTT
TCCAACTTCCTAACAACCAACGATCAAATCTTCACCAACAGTCATCGTAT
ATCGCACGCTGTTCCTCGCCTCTTTGGTACCATTATTGATTGTTGTTTCA
CTAACATTCAAGTTGCCGTGACAACCGTTAGAACAATGACACCATGTGAA
GAAACGAGGGAAATTAGATATGGCGAACAAAAGATTCCAGATTACCTCGA
TAGCCAGGATTTAAGAGGATCATTTTCAATGTATTACGAAGAAGATTTGA
AACAACAATTCAAAGAATTAGAAGAAGGTCTCAACAAATTAATAAACGTT
CGAAAATGTATTCGAGATGCACATCGAGAAGATATGATCCAAATCGCCGA
TAAATTGGATGGCAATAAAAAGAACGCACACATCGCAAAAGCTATTGGAT
TGAGGGATAGTGAGCATTGTTGGGTTCGGTTTGATGTTTACAACTTTTGG
TGCATCGGCTGTCTTGATTCCTCTCGGTGCCGCTCTCGGTGGAACGGGTG
GGTTAACCGCAAGTATCTCAACTTTTGTTGAATATGGTATAAAAAGGTCA
ACAGCGAACGATATAAAGCGCATGCGTGAAGAATACGAGACAGTCGTCAA
CGAGGTCTTCAAATCTCTCCAAGATATCGAAACAACCATcgaaaatgttt
ggaaatggTATCATTATGTCGGGAAAACTGGAAAATCAGTTCTAGTAATA
GTCGACGTTGTTGTCAAATTGGCGCGTCTTGCTGTTGCTATTGACAACGT
TAGTGATGTCACTGCTACTGTATTTCGGACAGCTGGGGCGGCCGGGCGTG
GACTTGCTATAGCGGGTGTTGTTTTTAGTGCTATATTACTGCCCATTGAT
ATggtatttttttggtataagtATAAAGAAGTTAAAAGACGATGAAAAAT
CTGCTCAAGCTACGGCAATAAGAGACTGGCTTGATCAAGATTTACCAAGC
TCTAAAGAGATAGAGGAAATCGTTGGAAGACTGAGAACGACGTTATTAGA
GTTTACTGAAGATATAAGAAACGGTAAAGATGAACAAAGTTTGAACGCAG
GTGAACAGAAGTTCATCAATGCTTTGGAAGAGATTAAATTGATGATCGAA
CAAAAGATCACGTGACCTTTTTAAACAAATCAGATTGCTTGATTTTGTTT
GCGTATcaacaaaattaaaatcaagtACCATAAAATCTTCTCGACTAGTC
AGTGCTTAACTTTCCATACCCTAAGTGACTTCATATTGTATGGTTATATT
GAATTATATTTAAAGCGTGCATTgatagactttttcataaattacaagAA
CAAGAATAAGAGCAAGCGACTGCCTCGTTTTAGAGactaaaaatgatatt
ttgaatAGAATCAAGCTTTGATAAACTCCTTTGGCACGCAATTATCATAG
CGATCAATCCAAAACTAGACAAAAGATTGGCAGAGATGTTCGcaaagtaa
tttatgaaaaggcctcaATTACCATCAATATATCctaataaaaaatagaa
aaagataaCATATTTTGTACAGGTCAAatctgaaaatatatttttaagta
AGTATTGAATATTGTAATATTTATTAAAAGAAGATAATTCTTTACTATGA
CAC
Run BLAST on NCBI

transcript from alignment at scaffold_418:185685..191314-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064508 ID=TCONS_00064508|Name=TCONS_00064508|organism=Clytia hemisphaerica|type=transcript|length=5630bp|location=Sequence derived from alignment at scaffold_418:185685..191314- (Clytia hemisphaerica)
GCGGTAGTCATGATGTCTGACTACTTAAAAGAATTGACTATAAATGACGG
TAAAAGTGAAATCACGAACAAACTGGACAACACTGTCACTCAAGCACTTT
CCAAAGCTATAAATTTCCCTGAATTTGTTGATTTTGACGAGGAAGATAAA
TCGTTGAATGAATTGATTCAATCTTATGCATGGATACAACCTGATGATCT
CAAGATTCAATTAGATCTACAAGTAAGCTTTTTGTTTTTTATCCTTGATG
AAATGGACGAGTTAATCTGTTATTGTTGTCTGATATAATGGAGTTTTTAA
TTGAGTCAGGGGTTTGAAGATTACCTCACCCCTGTCTCGCAGCTCCGGTG
GAACTTCTTTCTACTGTGGGGATGAAAATTTATATCAAAATATCAAGGTG
ATAGAGATTCTATTGTTCCAAGTCAAAAAATCCAGTGGTATGGTTTTGAA
GTGCAAGTTCTTTTCATTTTCAATATCAAATAGGGATGAAAATAAAATCA
ATTTCCCAGTGGGGCTGAAATTGTAATGCATTTTGTCAACCGTGGAAGAA
ATTTTGACCAGTGGGAAGGGGATGCCAGCGGGTGACACATGAGTGTGATT
AACTGAACCAAATGATTTTGGTTCTAACATATACCTAGAAATCTTAAAGT
CTCGCGAAGTTATAGTGGTGTGTTTGGATGGGAATAAGGGTAGGCTCTCC
CAGTGGAGACCTTTAGAGTANATCTTAAAGTCTCGCGAAGTTATAGTGGT
GTGTTTGGATGGGAATAAGGGTAGGCTCTCCCAATGGAGACCTTTAGAGT
AGGCGTCGGGAAAAATACGGTTTCTAAGAAATCTTTTCTCTATTTCTACT
ACTTTCAGGACAAAAACACATTGTCTGGTTTGTCAGATGCTGTTCACTCA
TTGGCTATCATGACAACACGTGACAATAATGCGTTCGAAATGTTAAAATG
TCTCGTTGNTTTTGTCAACCGTGGAAGAAATTTTGACCAGTGGGAAGGGG
ATGCCAGCGGGTCTGTGACACATGAGTGTGATTAACTATGAACCAAATGA
TTGGTTCCAACATTTACCTAGAAATCTTAAAGTCTCGCGAAGTTATAGTG
GTGTGTTTGGATGGGAATAAGGGTAGGCTCTCCCAATGGAGACCTTTAGA
GTAGGCGTCGGGAAAAATACGGTTTCTAAGAAATCTTTTCTCTATTTCTA
CTACTTTCAGGACAAAAACACATTGTCTGGTTTGTCAGATGCTGTTCACT
CATTGGCTATCATGACAACACGTGACAATAATGCGTTCGAAATGTTGAAA
TGTCTCGTTAATTGTTGCAAACACGCGAATTACGCCATTCAGAAGGCGGG
AAGTGGCGCCGATGATTTGTTGCCCACACTTATTTATGTGGTGCTGAAGG
TAAAATTGTTTGAATTGAGATCCCTTCTAGCCTAAAGATCCATTCCATGA
TTCCTTCTTTAATGTACTAATAGTGATGTAGTAGCATGATTTGGGCTATA
GGTTTGACTTTTCCACCTCCAGATGGTGCTCATATGGCAGATGAAAACAC
AGGACAGCCAATCAAATTTTGCCATTCTTTTATACGTCTCACATTCTTAG
AGAAAAGGCAACTTTCGATACTTTTATTTTAGTAAGTGAGAACAGGGCTA
CTCTAGGGGCTGAGTTAGGTCCGGTATGTGCATCGGCGTATAGTCATTTT
TTCTTTTGATCATGAAAGTATAGTATAAGTATATTTTTTTCAAGCAAGAG
GGCTAAAAAGGGTTGAAAATCTAAAATCCCCCATTATGGAAATTTGTGCC
AAACGCCACACACGTTTTCTGACTCTTCAAGGACTATACTTTCATGATCA
AAAGAAAAAATGACTATACGCCGATGCGCATACGGGACCTAACTCAGCCC
CTAGAGTATTAAACCAAAAATCATACTCACAGCTCAAACCGTGCTGTAAA
CATCAGATTATAAAAGTACAGTACGGGTGTCCTGTCTAGCCCCTACCATG
CTTTTATTTCTTTTATTGAAAGTTACCGCTACGCAATATTCATTTGAGCT
AAAAGCTTTTATGAGTTTGTGTTACAATGCCAATTCCTTGGAATGACTAC
AATGGCTATATTTTCTCACGATTCCTAGGTGAAATATTTATAAAAAGACA
GGAGTAATGATTCCGTTGGGAAAAATTCGCCTTCCTCTGGTTACTTTATT
TAAGAAGACAGGAACACTAACTTTACATTGCATGATTTCTATTTTTTTCA
GAGCAATCCACCAAGACTTTATTCTCACTTAAAGTTCGTTTCCAACTTCC
TAACAACCAACGATCAAATCTTCACCAACAGTCATCGTATATCGCACGCT
GTTCCTCGCCTCTTTGGTACCATTATTGATTGTTGTTTCACTAACATTCA
AGTTGCCGTGACAACCGTTAGAACAATGACACCATGTGAAGAAACGAGGG
AAATTAGATATGGCGAACAAAAGATTCCAGATTACCTCGATAGCCAGGTT
CTTTGTCATTTAAGGTTGACATTGGCCCTGTTCTAGGCGTAAAGTAGAAG
GCTTCTTTCATCACTTGGGCTACGCACTGAATTCAGCTTGAATAAAACAA
AGTTTAAATTTTTAGAATTTTCGTCATAACGTGAATATAGCGTTGAGAGA
AACTTAGTTAAAATATCGATTTTGTCGTCTACAAATTTCCCTCATTTCCC
AGTCCCTCATTATCGTTATCCAGAACCGTAAACATCCCTCTCCGTAGTCA
AAGAATACTCTTGAACCTTATCTATTTCCTTATTTTTAGCTATCCTAGCC
TTTAAGTCATCTTAGCCTTTATCTTATTCTTGGTAGCCTGGGTACTTGAT
AAAATCAAATGCAAGGAGTTTCAATTTGAACACCCCCTTCTCACAGACCC
ACTGGCTGAAAAAATCCTACCGGGTCTGTGAGAAAGGGGTGTATTTGACT
TTTGAACTTTATTCTTCCAGGATTTAAGAGGATCATTTTCAATGTATTAC
GAAGAAGATTTGAAACAACAATTCAAAGAATTAGAAGAAGGTCTCAACAA
ATTAATAAACGTTCGAAAATGTATTCGAGATGCACATCGAGAAGATATGA
TCCAAATCGCCGATAAATTGGATGGCAATAAAAAGAACGCACACATCGCA
AAAGCTATTGGATTGTTCGTGTCTATAGGAGGTTAGCCAGTGTGCCTTCC
CACAAACCAAATTTTTTCTTTGATAAATCGCGATAAAAAAGCGGTTTTCG
TCTAACAGGCTAATATGAGGTTTGTTATTTCGAATTTGTCAACAATAGTT
CTCGGATATTTTATCTATTTGACATGACTGAATTTCTTAAGGCTGAAATT
AAGTTACTATCCACGTGCTAATTCTAGTAAATCTGAAGAATCGAAAGCCT
TTGCAATTTAAAAGCAAGTTTTGCGGGATAAAAAATTTCTTATTTGTCCT
GAGGAGGAAGAATCCTAAAAAATAAATAAAATAAATAAATAAACACTACT
ACTACTTATGATCCCCGCAAAGTAAGATTTCTGATCGGAGTTTTTTGAAA
GTGGTACCCTAATGGTAGCTACTCAATGTCGGTTGAAAAAAATTAAGTGG
AAATTTCATTGCATTATAAATTGATCCACATCGAATAATGCTACCATTCT
GGTATCACTTTCAAAAAACTCCGATCAAATATTTTAGTTGGTCGGGATCG
AGAAACTGCGTCAAGGGTTTTTAAAGGGTACCACTTTTCTGAAAACTCCG
ATCAAAGAAGGCGGATATAGCTTGGTCCAGAATAAAGTTAGACTAAGACT
CAAGACACTCACCTGTATCAACTCTCCCAGCTGGCACACAACGTTGTTTC
AACGTTTATCTAACGTCCACAACGTCCATATAACGTTAGATGGACGTTAA
AACAACGTTGTGTGCCAGCTGGGCTAATTCTCACACGTCATGTTTTTCAG
GAGGGATAGTGAGCATTGTTGGGTTCGGTTTGATGTTTACAACTTTTGGT
GCATCGGCTGTCTTGATTCCTCTCGGTGCCGCTCTCGGTGGAACGGGTGG
GTTAACCGCAAGTATCTCAACTTTTGTTGAATATGGTATAAAAAGGTATC
CTCTACTTCTTAATGGGACTTAGATTTCTTAAAATCATATGTAGAATGAG
AAGCTATTAGGCTATATTACAGGCTTATGTTTATTTTGGTCTAGTTTAAC
TTGATATTTCTCGCATTTCCACCACATTTCCTTGTGCGGTGTACAATCCA
CACCTCACGTTTTATTCTAAAGGTTATAGTGACCCCTACCAAAACCCTTC
TCCATAATCAAAGTCACAAAATTGTGTTCCCCAAGCTTGTTCGAGTTATA
TTTCTCGAGATATTCAAATTTTTGTATTTATGACGTCATCAGTCATGACG
TCATAATCAGGTTTTTAAAATTAAGTTACACCGAATATGGTATTCTACAT
CCAAATATGCTTCCAAAATTGTAAAGTTTGTTATGGTTTAGGGACTGGAA
CTGGGGCGGAAAAAGATTTATGCAATTCTGGGGCATGCATTAAGTTACCC
GAGGTATTTTTAACATATTTTAGGTCAACAGCGAACGATATAAAGCGCAT
GCGTGAAGAATACGAGACAGTCGTCAACGAGGTCTTCAAATCTCTCCAAG
ATATCGAAACAACCATCGAAAATGTTTGGAAATGGTATCATTATGTCGGG
AAAACTGGAAAATCAGTTCTAGTAATAGTCGACGTTGTTGTCAAATTGGC
GCGTCTTGCTGTTGCTATTGACAACGTTAGTGATGTCACTGCTACTGTAT
TTCGGACAGCTGGGGCGGCCGGGCGTGGACTTGCTATAGCGGGTGTTGTT
TTTAGTGCTATATTACTGCCCATTGATATGGTATTTTTTTGGTATAAGTA
TAAAGAAGTTAAAAGACGATGAAAAATCTGCTCAAGCTACGGCAATAAGA
GACTGGCTTGATCAAGATTTACCAAGCTCTAAAGAGATAGAGGAAATCGT
TGGAAGACTGAGAACGACGTTATTAGAGTTTACTGAAGATATAAGAAACG
GTAAAGATGAACAAAGTTTGAACGCAGGTGAACAGAAGTTCATCAATGCT
TTGGAAGAGATTAAATTGATGATCGAACAAAAGATCACGTGACCTTTTTA
AACAAATCAGATTGCTTGATTTTGTTTGCGTATCAACAAAATTAAAATCA
AGTACCATAAAATCTTCTCGACTAGTCAGTGCTTAACTTTCCATACCCTA
AGTGACTTCATATTGTATGGTTATATTGAATTATATTTAAAGCGTGCATT
GATAGACTTTTTCATAAATTACAAGAACAAGAATAAGAGCAAGCGACTGC
CTCGTTTTAGAGACTAAAAATGATATTTTGAATAGAATCAAGCTTTGATA
AACTCCTTTGGCACGCAATTATCATAGCGATCAATCCAAAACTAGACAAA
AGATTGGCAGAGATGTTCGCAAAGTAATTTATGAAAAGGCCTCAATTACC
ATCAATATATCCTAATAAAAAATAGAAAAAGATAACATATTTTGTACAGG
TCAAATCTGAAAATATATTTTTAAGTAAGTATTGAATATTGTAATATTTA
TTAAAAGAAGATAATTCTTTACTATGACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040459XLOC_040459Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064508-exon-scaffold_418-1575043694:191093..191314TCONS_00064508-exon-scaffold_418-1575043694:191093..191314Clytia hemisphaericaexon
TCONS_00064508-exon-scaffold_418-1575043694:189916..190104TCONS_00064508-exon-scaffold_418-1575043694:189916..190104Clytia hemisphaericaexon
TCONS_00064508-exon-scaffold_418-1575043694:188818..189063TCONS_00064508-exon-scaffold_418-1575043694:188818..189063Clytia hemisphaericaexon
TCONS_00064508-exon-scaffold_418-1575043694:188151..188344TCONS_00064508-exon-scaffold_418-1575043694:188151..188344Clytia hemisphaericaexon
TCONS_00064508-exon-scaffold_418-1575043694:187220..187364TCONS_00064508-exon-scaffold_418-1575043694:187220..187364Clytia hemisphaericaexon
TCONS_00064508-exon-scaffold_418-1575043694:185685..186741TCONS_00064508-exon-scaffold_418-1575043694:185685..186741Clytia hemisphaericaexon
TCONS_00064508-exon-scaffold_418-1510915933:191093..191314TCONS_00064508-exon-scaffold_418-1510915933:191093..191314Clytia hemisphaericaexon
TCONS_00064508-exon-scaffold_418-1510915933:189916..190104TCONS_00064508-exon-scaffold_418-1510915933:189916..190104Clytia hemisphaericaexon
TCONS_00064508-exon-scaffold_418-1510915933:188818..189063TCONS_00064508-exon-scaffold_418-1510915933:188818..189063Clytia hemisphaericaexon
TCONS_00064508-exon-scaffold_418-1510915933:188151..188344TCONS_00064508-exon-scaffold_418-1510915933:188151..188344Clytia hemisphaericaexon
TCONS_00064508-exon-scaffold_418-1510915933:187220..187364TCONS_00064508-exon-scaffold_418-1510915933:187220..187364Clytia hemisphaericaexon
TCONS_00064508-exon-scaffold_418-1510915933:185685..186741TCONS_00064508-exon-scaffold_418-1510915933:185685..186741Clytia hemisphaericaexon
TCONS_00064508-exon-scaffold_418-1491911889:191093..191314TCONS_00064508-exon-scaffold_418-1491911889:191093..191314Clytia hemisphaericaexon
TCONS_00064508-exon-scaffold_418-1491911889:189916..190104TCONS_00064508-exon-scaffold_418-1491911889:189916..190104Clytia hemisphaericaexon
TCONS_00064508-exon-scaffold_418-1491911889:188818..189063TCONS_00064508-exon-scaffold_418-1491911889:188818..189063Clytia hemisphaericaexon
TCONS_00064508-exon-scaffold_418-1491911889:188151..188344TCONS_00064508-exon-scaffold_418-1491911889:188151..188344Clytia hemisphaericaexon
TCONS_00064508-exon-scaffold_418-1491911889:187220..187364TCONS_00064508-exon-scaffold_418-1491911889:187220..187364Clytia hemisphaericaexon
TCONS_00064508-exon-scaffold_418-1491911889:185685..186741TCONS_00064508-exon-scaffold_418-1491911889:185685..186741Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_418supercontigscaffold_418:185685..191314 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.05386	7.3475	1.2787	0.0536545	3.70367	2.1854	1.3966	0	2.86424	7.20689	3.59434	3.88081	2.14547	1.52025	1.31362	2.76534	2.16932	1.63495	1.02521	4.01184	3.39464	1.2304	6.30623	7.33255	0	0	2.28651	0.922135	3.45144	2.91163
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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