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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064506 ID=TCONS_00064506|Name=TCONS_00064506|organism=Clytia hemisphaerica|type=transcript|length=381bp
gaCGTTACCTTTACGCCGAAGCCGACAACAACAAAGATAAGACGGCCGTC
TTGACCACACCCACATTGAAAAGTTCAACTCCATACTGCATGAGGTTTTT
CTTGAGTATGAATGGTAGAGATATGGGTGAATTTGATGTGGAGCTTTTAC
AAAATGGAAAAGCGAAGAATGTGTTCTCCAAGAAAGGCAATCAAGGCAAT
AAGTGGAGAGAAGGGAGAGTCGAGCTGCCAGCAAACCAGGAATTAAAGGT
TCGAATGAAAGCCACCATTGGGAATGGACCACTCTCAGACATTGCTCTTG
ATGAAATTGAATTCCAAGAAGGTAGTTGTTCACCCGATTTCCAATCGTGC
GATTTATCGGATTCAAATGATGGAACTTGTG Run BLAST on NCBI protein sequence of TCONS_00064506-protein >TCONS_00064506-protein ID=TCONS_00064506-protein|Name=TCONS_00064506-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
RYLYAEADNNKDKTAVLTTPTLKSSTPYCMRFFLSMNGRDMGEFDVELLQ
NGKAKNVFSKKGNQGNKWREGRVELPANQELKVRMKATIGNGPLSDIALD
EIEFQEGSCSPDFQSCDLSDSNDGTC Run BLAST on NCBI transcript from alignment at scaffold_418:178697..180402- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064506 ID=TCONS_00064506|Name=TCONS_00064506|organism=Clytia hemisphaerica|type=transcript|length=1706bp|location=Sequence derived from alignment at scaffold_418:178697..180402- (Clytia hemisphaerica)
GACGTTACCTTTACGCCGAAGCCGACAACAACAAAGATAAGACGGCCGTC
TTGACCACACCCACATTGAAAAGTTCAACTCCATACTGCATGAGGTTTTT
CTTGAGTATGAATGGTAGAGATATGGGTGAATTTGATGTGGAGCTTTTAC
AAAATGGAAAAGCGAAGAATGTGTTCTCCAAGAAAGGCAATCAAGGCAAT
AAGTGGAGAGAAGGGAGAGTCGAGCTGCCAGCAAACCAGGAATTAAAGGT
AAATTATTTGAAGAAGGATTTTTTTTAAACCTACAACTTGAATATTTTCC
TCAGTCCTCATCTGAATTCGCTGGGACCCCAGCCCCACTGTAAAATTAAG
CAAATAATCTCGTCCCCGGTGGGAAAATACCCTTAAATTTCAGCCCACTA
GGAAATTGACTTTGAGTTCATCCCCACTCGAAATTCCATGTTTGAAAATT
GCACTCTAAAACCATCCCCACTGGGTTTTTTAACCTTGGAACAATAGAAT
TTAAATCCCCAATAAAATACCAATATGAATTTTGAGGAAAAAAGTTCCAG
CGGGGCTGTGAGACAGGGGTGTAAAATTCGCTAGATAGAAAATATTATCC
TAGTTAGTAGACTGACAGGGGTACGCTGCTAAAAGCATTTTCTTTTTGAA
AAGTTTAACAAAATTTGGGGTGCAATTGACGCCGAAGCCACTCTTTATGA
TGGACTTTCTTCATTTTGATTAATTTAACATTTTCCTTTTAACCCTTTCC
GGACGCACGGGCCACCGGGTGGCCCATAGCTTTGTAAAAGATTTTAACAG
TTTTCGCGCCAAAATACAATGACATGGTTTTGAATAATGATTTTGAGATA
AATTTCCCGTAACCTGCAAAAAACCGCTTTTCAATATCTTGTTTACAACT
AGAATTATAAATTTTTAATGTTTGTTGTAAATTTACTCAGGCTAAATCTG
TAAGGGAAAAATTGCTCAAAAATTTGGACAAAAAATCACTTTACGCAGAT
TCTTGGAAAGCTTATGACATGAAATATTTTTTACCCGGTCAGTAATTCAA
TTCTCTAAATCATATTCAAAGTTCAAGGCGTAAAACAAATGCCTTTTACT
CTATTTCTTTATTCAAAGACAAAAATTTTACCTTTCCGAAAAAAGATCTT
CCGATTTTTCGGTCACATGACAAGGTGTCAGCCATATTTCAAATTTTTTT
TTTGGTATTTCAAAACTCCTATTACATGTGAAAAAAATGAGGTATTACTT
ATCGTGATATCTTTTATCAATATTCAAAATAAATAAACAACACAAAAATT
TGATTTTATTCAAACAAAGCTTTTCGAGTCTTAACTGCTCATCATCAGGT
TAAAAATCAATCACTTTCTATTGCAATTTTAGTGAAGCCAGTCAAAAATC
AAATTTTTGTTTGCGTCATATAGCCGTGAAATCATGCGTCCGGAAAGGGT
TAAAGCTCTTATAAATACAATTTTGTATTTTTGCGACTCTTTTTTTTGGT
TTTCAACAACGTCTAGACTGCGTATATAATATTTACAAAATTAAAATCTA
AAATTTGTTGTCTTTTACGGCAGGTTCGAATGAAAGCCACCATTGGGAAT
GGACCACTCTCAGACATTGCTCTTGATGAAATTGAATTCCAAGAAGGTAG
TTGTTCACCCGATTTCCAATCGTGCGATTTATCGGATTCAAATGATGGAA
CTTGTG Coding sequence (CDS) from alignment at scaffold_418:178697..180402- >TCONS_00064506 ID=TCONS_00064506|Name=TCONS_00064506|organism=Clytia hemisphaerica|type=CDS|length=756bp|location=Sequence derived from alignment at scaffold_418:178697..180402- (Clytia hemisphaerica)
GTTCGAATGAAAGCCACCATTGGGAATGGACCACTCTCAGACATTGCTCT
TGATGAAATTGAATTCCAAGAAGGTAGTTGTTCACCCGATTTCCAATCGT
GCGATTTATCGGATTCAAATGATGGAACTTGTCGTTACCTTTACGCCGAA
GCCGACAACAACAAAGATAAGACGGCCGTCTTGACCACACCCACATTGAA
AAGTTCAACTCCATACTGCATGAGGTTTTTCTTGAGTATGAATGGTAGAG
ATATGGGTGAATTTGATGTGGAGCTTTTACAAAATGGAAAAGCGAAGAAT
GTGTTCTCCAAGAAAGGCAATCAAGGCAATAAGTGGAGAGAAGGGAGAGT
CGAGCTGCCAGCAAACCAGGAATTAAAGGTTCGAATGAAAGCCACCATTG
GGAATGGACCACTCTCAGACATTGCTCTTGATGAAATTGAATTCCAAGAA
GGTAGTTGTTCACCCGATTTCCAATCGTGCGATTTATCGGATTCAAATGA
TGGAACTTGTCGTTACCTTTACGCCGAAGCCGACAACAACAAAGATAAGA
CGGCCGTCTTGACCACACCCACATTGAAAAGTTCAACTCCATACTGCATG
AGGTTTTTCTTGAGTATGAATGGTAGAGATATGGGTGAATTTGATGTGGA
GCTTTTACAAAATGGAAAAGCGAAGAATGTGTTCTCCAAGAAAGGCAATC
AAGGCAATAAGTGGAGAGAAGGGAGAGTCGAGCTGCCAGCAAACCAGGAA
TTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064506-exon-scaffold_418-1575043694:180155..180402 | TCONS_00064506-exon-scaffold_418-1575043694:180155..180402 | Clytia hemisphaerica | exon |
| TCONS_00064506-exon-scaffold_418-1575043694:178697..178829 | TCONS_00064506-exon-scaffold_418-1575043694:178697..178829 | Clytia hemisphaerica | exon |
| TCONS_00064506-exon-scaffold_418-1510915933:180155..180402 | TCONS_00064506-exon-scaffold_418-1510915933:180155..180402 | Clytia hemisphaerica | exon |
| TCONS_00064506-exon-scaffold_418-1510915933:178697..178829 | TCONS_00064506-exon-scaffold_418-1510915933:178697..178829 | Clytia hemisphaerica | exon |
| TCONS_00064506-exon-scaffold_418-1491911889:180155..180402 | TCONS_00064506-exon-scaffold_418-1491911889:180155..180402 | Clytia hemisphaerica | exon |
| TCONS_00064506-exon-scaffold_418-1491911889:178697..178829 | TCONS_00064506-exon-scaffold_418-1491911889:178697..178829 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_418 | supercontig | scaffold_418:178697..180402 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
Blast
The following BLAST results are available for this feature:
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