TCONS_00064503 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064503
Unique NameTCONS_00064503
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064503 ID=TCONS_00064503|Name=TCONS_00064503|organism=Clytia hemisphaerica|type=transcript|length=1553bp
aaaaaagaaaataattttcaaatttttataaaactttcAACAGATAACAG
ATGATTCAACAGCTCATCACAATGTAAGAGtgaAGAATAATAATAAGAAG
AAGATAATCTAATAAATTGTTTTTGGAGACAATCAAAATACAAGTACAAC
ATGATGACTGAAGAGGAACAAATGAGAATGGAATTGCAAAGAATGCAGAG
GAGAGCTGATGAAGTCACAGATGAGTCTCTTGAATCAACTAGACGAATGC
TTGCATTAGCTGAAGAGACCCAAGACACAGGAATAAAAACACTAGTAGCT
CTTGATGAACAAGGAGAAAAACTGAATAGAGTTGAAGAAAATTTGGATCA
AATCAATGCTGATATGAGAGAAGCAGAGAAAAATTTGACTGGTCTTGAAA
AGTTTTGTGGTTTATGCGTTTGTAGTTGTAGAAGGAAGCAAGACTTTGAA
AGTTCTGAACAATACAAGAAAGCTTACAGTAAAGGAGACTCAAGTGGCGG
AGGAGCCGGAAGTTCTGGACGGAACAATATGCAAGGAGGTTATGATAAAG
CTCCGGCTACAGGATACATCCAAAAAGTGACTGGAGACGCAAGAGAAGAT
GAGATGGATGAAAATATCGGCCAAGTTGCAGGCATTGTTGATAACTTGAA
ATCTATGGCAATGGATATGGGAGGTGAACTTGATAAACAAAATACTCAAA
TTGATAGAATTACTGATAAGGCAACTGCTAATGAGTCAAGAATTGATGTT
GCCAACAAAAGGGCTGAGAATATTCTGCGAAAGTAGATTGGGCTCGAATT
GAAAATATGGTTGCGGGCTCACAAAATCAAATTATGCCAAATAAATTAGT
CCAGAGAGACGCACATTTTAGAATGTTTTTAGAAGTAGATATTAATTTTC
CATTCATGTGCTTCCTTAACCACAGCCAATATGTAGGTTAAAGGAAGTGC
TATAGTACACCCACTAGACATTTTCTACATTTATCACGTGTAGCTTCGTT
GAAGAAGGAAGTAGGATTGTCTATCAATTTGCATTGTGTGTTTATTCTTT
TGGtgtctttgaagttttttttcgagGCTCTCTTCTATATGTACAAATTA
TAGAATGTAGATTTTTTGACATCGAAATTATTTATTAAGCAATCCTTTTT
GCTTCTCTTTTAAATATTATTTAGCAATATTATAACCCATCCAGGGACAA
AGTTAATCATCTAATTTTGAAACACTGACAATTATTATATTTATTCATAT
NAGCACAGTTAATCATCTAATTTTGAAACACTGACAATTATTATATTTAT
tcatattgttttgatttaaactAACAACGTAACGGTTGGGGTGCATGGTT
TTGATTTGTATCATCTTGTTCTTCTATTTAACTATTTAGGCCATAGTTTA
TAATTTTTAGGTTCAGTTTATTATCTTGTTGTCAATATCAAGTTTGAATG
GGTGCACctgttatatttatttttcctatttttttattattttacctTAG
GTCAATGTTTGGTATTCTTGTTGCCAAAATTTGTACAATAAAAGTTAAtg
tct
Run BLAST on NCBI

protein sequence of TCONS_00064503-protein

>TCONS_00064503-protein ID=TCONS_00064503-protein|Name=TCONS_00064503-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MMTEEEQMRMELQRMQRRADEVTDESLESTRRMLALAEETQDTGIKTLVA
LDEQGEKLNRVEENLDQINADMREAEKNLTGLEKFCGLCVCSCRRKQDFE
SSEQYKKAYSKGDSSGGGAGSSGRNNMQGGYDKAPATGYIQKVTGDARED
EMDENIGQVAGIVDNLKSMAMDMGGELDKQNTQIDRITDKATANESRIDV
ANKRAENILRK
Run BLAST on NCBI

transcript from alignment at scaffold_418:117909..127429-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064503 ID=TCONS_00064503|Name=TCONS_00064503|organism=Clytia hemisphaerica|type=transcript|length=9521bp|location=Sequence derived from alignment at scaffold_418:117909..127429- (Clytia hemisphaerica)
AAAAAAGAAAATAATTTTCAAATTTTTATAAAACTTTCAACAGATAACAG
ATGATTCAACAGCTCATCACAATGTAAGAGGTACTGTATACTCTGATTCC
TTCAATTGTATATTTTTGAATTTTTGTACATATTTGATCATATCTTTTTA
ACTCACAGACACAGACAAAAATATTTTTTCTGTCTGGCTGGATCAGATTC
TTTTAATAAAAGTAAAAGACAAAGCTTTCTTCTCACAGTTAGTGGAAGTA
CCTCCATTTTAAGCATGTTCAAAGTTCACAATAACAACTTTCTTTTTGTT
GGAAAAGGAGGAAAATGTAGTTGAAGGTTGAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTCAGGAACAGTCGCCTTATTAGGAGACGCCTCCT
GATTAGGAGACCCGTCTCCTAATCAGGAGGTTCACGTCTCCTAATCAGGA
GACGGGTGTAATTATCTCCTGAACAAGCAAATTGCGCATGATTTGATTGC
TCCCAATGGAAAGAGCACAAAAAATTGATTCCATATGCAGTTAGGGAAAC
CATCCAGGATCCTGCCATCCTATAAGCCAGCAAAAACTGAATGCCACTTG
TAAACTTAAGTTTCTTACTATTTTCCATCAATAACAACCAAAAACATTGC
TACTTCCCAAAGCTGGAGACCAAAACAAATTATCTTCCAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAAGTGCGAAAAGACACGAACGTCATTTTTTAATGAGTGTT
GTTATGATTTTTTAGATCGCGGTCGCGTACAGGAACTCGCCAAATGTTCC
TAACTGATATGGTGATTTTCAGAAAAATCCACCGGTGGAATCAAATAATA
CAATTCTAATAATCCATAAGAACCAATCAGAAGTAAGAATCTATCTTCTG
AACAAAAGCGTCTCTAAAAGAAAAATGGCGGACATGAAAAAAATCAAGGG
GGTCTTCCTTGCAGTGCTTTATATTAGGATTGTGATCGATTGCACCGAGA
AATGTTGATAATTTTTTAAAAACTTTACCAATTCGAGGCTGCTCTTTCCG
TTAAAACTAGTTTCAAAATGTGCGGAAAAGCCTATAGCCCTTGGTTAAAA
CATAGCTGTCAACTTTGCCTTGCAAAAATGCGGGAGAGCTCCAAGTCGGA
AAAATTTTCTCGATAATTCAATTTTTCCGAATCGGAAAATCAGGAAATCG
AGGTAATTTTCCTGCAAAATCCGATTTTATCAGAATTTTTTTTCCGGAAA
TAGGGGAAATCGGGAAATTTTACGTCTCAATTTTCCAAATTCAGGAAATA
TAGCCATTCCGCTCTTTCAAATTCTGATTTTTTTTTAAGAAATCGGAAAC
TTTTTGGAAATGCGGGAGATGCGGGAGAAAATTCTGAAAATGCGGGAGAT
TTGGCTGAATTTTTTTCCCGCGGGAGAAAGCGTTGGCATGTGGGAGTCTC
CCGCCCAATGCGGGAGAGTTGACAGCTATGCTTAAAATAGACCTTTTTTC
AAAGAGGACGTCCTGTTGAATAATTATGTAGTCCTGCCATAAAAACAATG
AAAGAGCCATGCATAATTACTGTATCATGCATATTGTAATAATTATGCGT
GGTTTTATCATTGTTTTTCTGCTGGACTACATAATTATTCAACAGGGTGG
CCTCTTTGAAAAAAGGTCTATTGAGATCAAAGTTTTATGTCTCCTAATCA
AACGACCCCAAGCGACCTACATGTCTCCTAATCAGGAGACGTCTCCTAAT
CAGGAGGCGTCTCCTAATAAGGCGACTGTTCCTGACTGTTGTACCTCTNT
CCTAATCAGGAGACGTCTCCTAATCAGGAGGCGTCTCCTAATAAGGCGAC
TGTTCCTGACTGTTGAAACTTTGTATGTTTATCAGAAAAAGGGTTAGGAA
TTCATATCAAAAATCACAATCGCTAATTTTAGTTCTTTGATTTTCATGTA
GTTTTTTTCACTTTTTTGCTTCTTTAGCATGAGAATGTCCCAAAAAAAAG
TTTATATTTCTGCCAAAATGAATTTTCTTTTCCTTTGCGTGGGGTTTCTC
CTCAGAATTAAACTTATTCTTTACTTATATATAACTAACTTTTTGTTTTG
CTCCTCCATTTCCAGAGGCCCCTTGCTTGAAAATGGGTCCTATCACCTTT
TTTGACTCGTTTCAACCTTTTCCAAGCTAATTTTCTTCAAAAACAAAAAT
AAAACAATGCGATGTCTTCTTTTTTCAAAAAGAGATATATTTTTTAACTG
TTTGCGAAACATTTTTAGGCGGCAATCACAAATATCTTTGTTTCACATCG
CCCGACCGACTCTCGAAAATTGAGTAGAATTGAGTCGGTGATTTGGTAAA
TTTGTCGGACTCTTTATGTCAATGACCTTTCCTTCGTTCAAAAATTTTAT
TATTCCCGATTTTTTGCGAACGATTTCTAGCGCATTCGCAGCATTTTGAC
TTTGTTTATCATACATGCGCCATTTTGGGTCAGAGGTCACAGTGTTCAAA
GGTCATAATTTTAAACCACCCATATAACACGCAGTTGTTTTAGCTGCTGG
CTGGCTGGCTGGCAGTATCAAAGAATGTACTCCAAAAATGGATGGAAAAA
TAGAAACCCGAAAAATTTTTACGACCGACCGACCGACTCACTTTTTAGAC
CCAACGAGGACGCGAAATGAAGATATTTGTGATTGCCGCCTTAGTATTTT
GCGATGTTGTTTGGAACAAAATGCGAAAGTATCACCAATTCATTTCTCTA
GAAATTCTCTAGAAAAGCAAAGTAAAACTTGAAGTATAAGAGATTAAAGA
CAAAGCAATGTATAGTGAAGTTTTGAAGTAACGAGTAGATAAAGCAATAG
ATAAATACCCTGAGTATCAGAGGTTAAGTTTTCAAAGAATATATTAACCT
CTGAAGACCAATAATAGAAATTTTATTGCGCATGTGTAGAAAGAATCAAA
GATGAAGAGCAAATATTACCATACTAATGTCTAGCAGACTGTATCAGTAT
GCAGTTTACTATTTACGAATTCCCCAGAAACCTCCAAGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGAAACCTCCAAGTGTAATTGAAATGAGTTTATTTCAAAAGAAATCTTT
TACATGATCCCCAAATGTATAACAGTAATTACTAAACTTTTAATTATGGA
AAGATCACTTTAATTGAATCGAAATAATAGACAGACTTTATGTTATGATT
CTCTATCATTGACTCTTTTTACAAAGCATTGATGACTTTTTTAAGTTGTG
CTTTCAATGACGGGAATAAAAATATCAACTTTGAACTTCATCCAAGATCT
TGGATGGTCGTCATGGTTAGTTTTGTCTTCGTTGATTGCGCGCTGAATAG
AATCTCGATTCGTCGGCACAGCATCAATATATGATTTTGACCTGTGCTAT
TCACGCCACGGTAATAGATAAACAAATGAGTAAAATAGCGAAGTGGCGAG
TTGATAAAGCAATAGATAAACGAGTGAATAAATTAGCGAGGTAGCAAGTT
TATAAAGCAATAGATAAAAGAATGAAGAAAGTTGGAAGGTAGCGATCATA
GTGTCCTCCCCCCCTGGATTCAGGGGGGAATGGGTTTTGAGGTCAAAAGG
ACGTATAGGGGGGAAAGAATTTTTTTTGAAGCCAGGNTTAGGCATGGGGG
GAAGAGACCCTGAAGGACACTATGGCGATTTTATAAAGCAATAGATAAAC
AAATGTGTGGAGTAGCGAAGTGGCGAGTTGATAAAGCAATAGATAAACGA
ATGAATAAAGTAGCGAAGTGGCTAGTTGATAAAGCAATAGATAAACAAGT
GAATAAATTAGCGAGGTAGCAAGTTGATAAAGCAATAGATAAACTAATGA
AGAAAGTTGCAAGGTGGCGATTTTATAAAGCAATAGATAAACAAATGTGA
GGAGTAGCGAAGTGGCGAGTTGATAAAGCAATAGATAAACAAATGTGTGG
AGTAGCGAAGTGGCGAGCTGATAAAGCAATAGATAAACGAATGTGTGGAG
TAGCAAAGTGGCGAGTTGATAAAGAAATAGATAAACGAATGAAGAAAGTA
GCAAGGTAGCAAGTTGATAAAGTAATGAATAAACAAATGGGGTTCGGTTA
TTATCAGTTAGGGTTAGGGTCTGAGCTCGAGAGTCGCAATATAAGGCTGA
AGGCCTTCTTAGGGGCATTTGTACCCTGTGACTTAACTTAGGATCCCGTA
GGCGCACCGGTAGGGTTGGGAGCTTTCTTAATTAAGGTCTGTAAATTACA
CGCTATAGGTATCTTTAGGTATTTGTGAATGACAGCTTCCTGTCGTGTCT
CGTTGGCGCAAGTGGTTAGGCATCAGGTTTGTAAACCAAGGTTGCTTGCA
TTTTGGTGGTTCGACCCGGGGTTGGAGACCTGTTTCAGGCCGGAGACCTG
TTTCAGGAAAATACAATTAGAAAACAACTAGAAACACTTGAGAAAAACAG
AAAATCAGGATAGAAGATAAGAAAGTAGAAAATAGGGGGGAAATAAAGAC
GATGCATCCTGGAGTATGATATTGTTTGCCAACCAACAGAACAGGTTTTA
GGTTTTTTATCCAGGCAAAAATGCCTGAAATTGGCCCATTTTGGGCATAA
AAACAACCGGAGAATCGTCAAAAATTGAAAAAATCAAAAAATATCTCAGA
TTTGTGTTATTTGGGTCCAAAAAAATTAAGAACCACTAATTTTGAGAAGA
AAAGTCTCTACAGCCCACTGCTAGTGGTATAAAAATCTGAACTTTATTTT
TTAACGTACTTTGAAGACCTCATAATATTTTAGGACCCTCCCGGCACTCC
GGAAACGTCCAGAGCAAAAAGTGCCGTTTTTCGTGCTCACTTCCAGTGTT
CTGTAGCACAACTTTCGGTAGTCTGAATTGCAGAACTCTACAAAACCGCA
GGTACAGTGATCTACCACCCGCTTTCCAGTTCGGTTATTTTATTTCAGTG
TATTTTATACAGAATCTTGGTGAGTTAATAATTTCTTTGATTGACATTGA
TTTGCGCTCAAAAACAATAATTTCAAACGTTTTCAATAGAATGTTTATGA
ACCTATTATGCCTATTGACATGGTCATTGACCTTTATAAACTTAATTTCA
GCAAAAATTCTTATTGTGCTTTCAGTATCGCCAGATAGAAATTTTCACTA
GGAAAATACTTCAGAGAGTTTTAGAGGTGTAAATTTGACTATTGTCATTG
ATTGTCATGGTATTGACAAAATGACATTTACTTTCACAAATTCAAGGACA
AAATATTTTTCACGAATATAAACATTCACGAATCAGGTGACCAAAATGAA
AATTTTTACTTGAAAAATGGCTTTAAAGTTTCCAATAATTCATTGCGAGT
ATGAACCTTCGCGAATCACCTCTTTAAGAATATTCAAAGAGATATATATA
AATTACTTTTACAAAAAAGGCCAAAATGCACAAAAAATTGCGAAAGTTTG
TACGCCTAATGTATAATGAAATTAAGATATTTTTACCCTGAAGCTTTGAA
AATCACAACGAAATTCTCTTACTGGTATATCGAAAATTAGAACCCTCATA
TGCATCCTATTCTAGCCTAAAGCTTTTGCAATTTTTGACTTGCTGCAACT
GATTTGACATGAGGATCTACTGTATAACCCTCGTTTTAGTTTAAATAAAT
GTAGGTGTAGGTGGCCCTTTAACGAAAGCTATTTGAATTTGTTGGTACCA
GCGACTATGGAACCTTTTAGCTCTCTCCTAGCAGCCAGAGAGTGAAGCCA
CTTTACCATTTCCATGTAGGTTTTTTGTCTAGTGCTATTGTCTTAGTTCT
GTGAAATTTCTTTTTCAGTGAAGAATAATAATAAGAAGAAGATAATCTAA
TAAATTGTTTTTGGAGACAATCAAAATACAAGTACAACATGATGACTGAA
GAGGAACAAATGAGAATGGAATTGCAAAGAATGCAGAGGAGAGCTGATGA
AGTCACAGATGAGGTTAGATGTTGTTTTTAAAATTCATACATTGTCAATG
CTTAATTGAAGTTTATACAGGGTAGATTTCCTTTTTGAAGACTCTATCAA
AAATAAAAGGGTTGGAGTGCTCTTTTGACGTAAATAGTAACCACATGCTT
CCATTGGACTAGAGTGGTAAAGTAACATCATTTTATTTGGACATATTGCT
AAATATTATTTGAAACACTCTGCTCTGTTATTAATCTTTTATTTTTTCAT
ATTCTTAGTCTCTTGAATCAACTAGACGAATGCTTGCATTAGCTGAAGAG
GTAGGTACAATATTTTTAACTAGCGCATGGTATATTTCAGCATTTTACAA
AAAAAGATGAATCGCAAAAACATTATGCATTTGAAATGATTCAATATAAT
TGCGCACCGCATCAAATGTAGAATAATTTTCTTAATTTCTCTTTTAGACC
CAAGACACAGGAATAAAAACACTAGTAGCTCTTGATGAACAAGGAGAAAA
ACTGAATAGAGTTGAAGAAAATTTGGATCAAATCAATGCTGATATGAGAG
AAGCAGAGAAAAATTTGACTGGTCTTGAAAAGTTTTGTGGTTTATGCGTT
TGTAGTTGTAGAAGGTAACAGATACTCTTGATGACTGCACAATTAAATGA
ACATGATCAACACAAAACCTCAGCACAATCTGGCACAATGCATTTTGTCC
ACGATATACAAAAAATTATCAAATCTTTGAATTATTGGTCGTTGCTGCAA
GCTTTTATGAAACTTTCAATATCAAAAATTATTAAATGGTTTACAAAATA
AGTTTCCGTGCATAGTAAGATTGAATTCTTACTTAAGGAGATTTTCATAT
TAATTTAGCTATTATATACTATATAATAACCCCTGGTTATATCTATAATC
ATTGCATTTTATTGTTTACTTTCCAGGAAGCAAGACTTTGAAAGTTCTGA
ACAATACAAGAAAGCTTACAGTAAAGGAGACTCAAGTGGCGGAGGAGCCG
GAAGTTCTGGACGGAACAATATGCAAGGAGGTTATGATAAAGCTCCGGCT
ACAGGATACATCCAAAAGTATATATCTTTACTGTTGAGAGAGAAAGAAAG
GCACATGTGTTTGAATAAATTTATCACACTTTGGAGTTTTCAGTATGATA
AGAAATTGCTTACAATTCTATCAAAATTACCTGTAACTTTGAAATAAAGT
GGTTGCATTTTCTTCCTTATTTTTTTAGAGTGACTGGAGACGCAAGAGAA
GATGAGATGGATGAAAATATCGGGTTTGAATTTTTCAATATGCATTTTTT
TTCTTGTGTGATTCATTACTACATAAATCTGCTGTTCATGTTCATGCTTG
TTTTTTCACATTTAACTATGTATTCTTGTATTAAAACTATATTTCTTTTA
GCCAAGTTGCAGGCATTGTTGATAACTTGAAATCTATGGCAATGGATATG
GGAGGTGAACTTGATAAACAAAATACTCAAATTGATAGAATTACTGATAA
GGTAACATTATTTCATATTCTTCATTTTACACAACTTCTTCTTTTACTAA
ACTACAAGATGTGAAATTTTCTCCAACCACGTCGTTAATAATGGTTGGTT
CTGTAGTCTAAATTATATGTTTTAGATTTCCTTAAAGATGTTTTGCTCTT
TTTGTAAATAAGGGACTGGATTTATTCATTTGATTAAACAGAATTCTTTC
AAGTTTCCTTTGATCAGGAATGTCAAACAGAGAATTTGCTAACTCTTGTA
ATATTTTCCTTATGTAATTAATACACTATAGTATAATTTTTTTCTGATTT
CTTTTTCTGCCTCAAACATTGTGTTTTTCATTCTTTAGGCAACTGCTAAT
GAGTCAAGAATTGATGTTGCCAACAAAAGGGCTGAGAATATTCTGCGAAA
GTAGATTGGGCTCGAATTGAAAATATGGTTGCGGGCTCACAAAATCAAAT
TATGCCAAATAAATTAGTCCAGAGAGACGCACATTTTAGAATGTTTTTAG
AAGTAGATATTAATTTTCCATTCATGTGCTTCCTTAACCACAGCCAATAT
GTAGGTTAAAGGAAGTGCTATAGTACACCCACTAGACATTTTCTACATTT
ATCACGTGTAGCTTCGTTGAAGAAGGAAGTAGGATTGTCTATCAATTTGC
ATTGTGTGTTTATTCTTTTGGTGTCTTTGAAGTTTTTTTTCGAGGCTCTC
TTCTATATGTACAAATTATAGAATGTAGATTTTTTGACATCGAAATTATT
TATTAAGCAATCCTTTTTGCTTCTCTTTTAAATATTATTTAGCAATATTA
TAACCCATCCAGGGACAAAGTTAATCATCTAATTTTGAAACACTGACAAT
TATTATATTTATTCATATNAGCACAGTTAATCATCTAATTTTGAAACACT
GACAATTATTATATTTATTCATATTGTTTTGATTTAAACTAACAACGTAA
CGGTTGGGGTGCATGGTTTTGATTTGTATCATCTTGTTCTTCTATTTAAC
TATTTAGGCCATAGTTTATAATTTTTAGGTTCAGTTTATTATCTTGTTGT
CAATATCAAGTTTGAATGGGTGCACCTGTTATATTTATTTTTCCTATTTT
TTTATTATTTTACCTTAGGTCAATGTTTGGTATTCTTGTTGCCAAAATTT
GTACAATAAAAGTTAATGTCT

Coding sequence (CDS) from alignment at scaffold_418:117909..127429-

>TCONS_00064503 ID=TCONS_00064503|Name=TCONS_00064503|organism=Clytia hemisphaerica|type=CDS|length=4452bp|location=Sequence derived from alignment at scaffold_418:117909..127429- (Clytia hemisphaerica)
GCAACTGCTAATGAGTCAAGAATTGATGTTGCCAACAAAAGGGCTGAGAA
TATTCTGCGAAAGTAGCCAAGTTGCAGGCATTGTTGATAACTTGAAATCT
ATGGCAATGGATATGGGAGGTGAACTTGATAAACAAAATACTCAAATTGA
TAGAATTACTGATAAGAGTGACTGGAGACGCAAGAGAAGATGAGATGGAT
GAAAATATCGGGAAGCAAGACTTTGAAAGTTCTGAACAATACAAGAAAGC
TTACAGTAAAGGAGACTCAAGTGGCGGAGGAGCCGGAAGTTCTGGACGGA
ACAATATGCAAGGAGGTTATGATAAAGCTCCGGCTACAGGATACATCCAA
AAACCCAAGACACAGGAATAAAAACACTAGTAGCTCTTGATGAACAAGGA
GAAAAACTGAATAGAGTTGAAGAAAATTTGGATCAAATCAATGCTGATAT
GAGAGAAGCAGAGAAAAATTTGACTGGTCTTGAAAAGTTTTGTGGTTTAT
GCGTTTGTAGTTGTAGAAGTCTCTTGAATCAACTAGACGAATGCTTGCAT
TAGCTGAAGAGATGATGACTGAAGAGGAACAAATGAGAATGGAATTGCAA
AGAATGCAGAGGAGAGCTGATGAAGTCACAGATGAGGCAACTGCTAATGA
GTCAAGAATTGATGTTGCCAACAAAAGGGCTGAGAATATTCTGCGAAAGT
AGCCAAGTTGCAGGCATTGTTGATAACTTGAAATCTATGGCAATGGATAT
GGGAGGTGAACTTGATAAACAAAATACTCAAATTGATAGAATTACTGATA
AGAGTGACTGGAGACGCAAGAGAAGATGAGATGGATGAAAATATCGGGAA
GCAAGACTTTGAAAGTTCTGAACAATACAAGAAAGCTTACAGTAAAGGAG
ACTCAAGTGGCGGAGGAGCCGGAAGTTCTGGACGGAACAATATGCAAGGA
GGTTATGATAAAGCTCCGGCTACAGGATACATCCAAAAACCCAAGACACA
GGAATAAAAACACTAGTAGCTCTTGATGAACAAGGAGAAAAACTGAATAG
AGTTGAAGAAAATTTGGATCAAATCAATGCTGATATGAGAGAAGCAGAGA
AAAATTTGACTGGTCTTGAAAAGTTTTGTGGTTTATGCGTTTGTAGTTGT
AGAAGTCTCTTGAATCAACTAGACGAATGCTTGCATTAGCTGAAGAGATG
ATGACTGAAGAGGAACAAATGAGAATGGAATTGCAAAGAATGCAGAGGAG
AGCTGATGAAGTCACAGATGAGGCAACTGCTAATGAGTCAAGAATTGATG
TTGCCAACAAAAGGGCTGAGAATATTCTGCGAAAGTAGCCAAGTTGCAGG
CATTGTTGATAACTTGAAATCTATGGCAATGGATATGGGAGGTGAACTTG
ATAAACAAAATACTCAAATTGATAGAATTACTGATAAGAGTGACTGGAGA
CGCAAGAGAAGATGAGATGGATGAAAATATCGGGAAGCAAGACTTTGAAA
GTTCTGAACAATACAAGAAAGCTTACAGTAAAGGAGACTCAAGTGGCGGA
GGAGCCGGAAGTTCTGGACGGAACAATATGCAAGGAGGTTATGATAAAGC
TCCGGCTACAGGATACATCCAAAAACCCAAGACACAGGAATAAAAACACT
AGTAGCTCTTGATGAACAAGGAGAAAAACTGAATAGAGTTGAAGAAAATT
TGGATCAAATCAATGCTGATATGAGAGAAGCAGAGAAAAATTTGACTGGT
CTTGAAAAGTTTTGTGGTTTATGCGTTTGTAGTTGTAGAAGTCTCTTGAA
TCAACTAGACGAATGCTTGCATTAGCTGAAGAGATGATGACTGAAGAGGA
ACAAATGAGAATGGAATTGCAAAGAATGCAGAGGAGAGCTGATGAAGTCA
CAGATGAGGCAACTGCTAATGAGTCAAGAATTGATGTTGCCAACAAAAGG
GCTGAGAATATTCTGCGAAAGTAGCCAAGTTGCAGGCATTGTTGATAACT
TGAAATCTATGGCAATGGATATGGGAGGTGAACTTGATAAACAAAATACT
CAAATTGATAGAATTACTGATAAGAGTGACTGGAGACGCAAGAGAAGATG
AGATGGATGAAAATATCGGGAAGCAAGACTTTGAAAGTTCTGAACAATAC
AAGAAAGCTTACAGTAAAGGAGACTCAAGTGGCGGAGGAGCCGGAAGTTC
TGGACGGAACAATATGCAAGGAGGTTATGATAAAGCTCCGGCTACAGGAT
ACATCCAAAAACCCAAGACACAGGAATAAAAACACTAGTAGCTCTTGATG
AACAAGGAGAAAAACTGAATAGAGTTGAAGAAAATTTGGATCAAATCAAT
GCTGATATGAGAGAAGCAGAGAAAAATTTGACTGGTCTTGAAAAGTTTTG
TGGTTTATGCGTTTGTAGTTGTAGAAGTCTCTTGAATCAACTAGACGAAT
GCTTGCATTAGCTGAAGAGATGATGACTGAAGAGGAACAAATGAGAATGG
AATTGCAAAGAATGCAGAGGAGAGCTGATGAAGTCACAGATGAGGCAACT
GCTAATGAGTCAAGAATTGATGTTGCCAACAAAAGGGCTGAGAATATTCT
GCGAAAGTAGCCAAGTTGCAGGCATTGTTGATAACTTGAAATCTATGGCA
ATGGATATGGGAGGTGAACTTGATAAACAAAATACTCAAATTGATAGAAT
TACTGATAAGAGTGACTGGAGACGCAAGAGAAGATGAGATGGATGAAAAT
ATCGGGAAGCAAGACTTTGAAAGTTCTGAACAATACAAGAAAGCTTACAG
TAAAGGAGACTCAAGTGGCGGAGGAGCCGGAAGTTCTGGACGGAACAATA
TGCAAGGAGGTTATGATAAAGCTCCGGCTACAGGATACATCCAAAAACCC
AAGACACAGGAATAAAAACACTAGTAGCTCTTGATGAACAAGGAGAAAAA
CTGAATAGAGTTGAAGAAAATTTGGATCAAATCAATGCTGATATGAGAGA
AGCAGAGAAAAATTTGACTGGTCTTGAAAAGTTTTGTGGTTTATGCGTTT
GTAGTTGTAGAAGTCTCTTGAATCAACTAGACGAATGCTTGCATTAGCTG
AAGAGATGATGACTGAAGAGGAACAAATGAGAATGGAATTGCAAAGAATG
CAGAGGAGAGCTGATGAAGTCACAGATGAGGCAACTGCTAATGAGTCAAG
AATTGATGTTGCCAACAAAAGGGCTGAGAATATTCTGCGAAAGTAGCCAA
GTTGCAGGCATTGTTGATAACTTGAAATCTATGGCAATGGATATGGGAGG
TGAACTTGATAAACAAAATACTCAAATTGATAGAATTACTGATAAGAGTG
ACTGGAGACGCAAGAGAAGATGAGATGGATGAAAATATCGGGAAGCAAGA
CTTTGAAAGTTCTGAACAATACAAGAAAGCTTACAGTAAAGGAGACTCAA
GTGGCGGAGGAGCCGGAAGTTCTGGACGGAACAATATGCAAGGAGGTTAT
GATAAAGCTCCGGCTACAGGATACATCCAAAAACCCAAGACACAGGAATA
AAAACACTAGTAGCTCTTGATGAACAAGGAGAAAAACTGAATAGAGTTGA
AGAAAATTTGGATCAAATCAATGCTGATATGAGAGAAGCAGAGAAAAATT
TGACTGGTCTTGAAAAGTTTTGTGGTTTATGCGTTTGTAGTTGTAGAAGT
CTCTTGAATCAACTAGACGAATGCTTGCATTAGCTGAAGAGATGATGACT
GAAGAGGAACAAATGAGAATGGAATTGCAAAGAATGCAGAGGAGAGCTGA
TGAAGTCACAGATGAGGCAACTGCTAATGAGTCAAGAATTGATGTTGCCA
ACAAAAGGGCTGAGAATATTCTGCGAAAGTAGCCAAGTTGCAGGCATTGT
TGATAACTTGAAATCTATGGCAATGGATATGGGAGGTGAACTTGATAAAC
AAAATACTCAAATTGATAGAATTACTGATAAGAGTGACTGGAGACGCAAG
AGAAGATGAGATGGATGAAAATATCGGGAAGCAAGACTTTGAAAGTTCTG
AACAATACAAGAAAGCTTACAGTAAAGGAGACTCAAGTGGCGGAGGAGCC
GGAAGTTCTGGACGGAACAATATGCAAGGAGGTTATGATAAAGCTCCGGC
TACAGGATACATCCAAAAACCCAAGACACAGGAATAAAAACACTAGTAGC
TCTTGATGAACAAGGAGAAAAACTGAATAGAGTTGAAGAAAATTTGGATC
AAATCAATGCTGATATGAGAGAAGCAGAGAAAAATTTGACTGGTCTTGAA
AAGTTTTGTGGTTTATGCGTTTGTAGTTGTAGAAGTCTCTTGAATCAACT
AGACGAATGCTTGCATTAGCTGAAGAGATGATGACTGAAGAGGAACAAAT
GAGAATGGAATTGCAAAGAATGCAGAGGAGAGCTGATGAAGTCACAGATG
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040454XLOC_040454Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064503-proteinTCONS_00064503-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064503-exon-scaffold_418-1575043694:127350..127429TCONS_00064503-exon-scaffold_418-1575043694:127350..127429Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1575043694:120567..120711TCONS_00064503-exon-scaffold_418-1575043694:120567..120711Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1575043694:120280..120321TCONS_00064503-exon-scaffold_418-1575043694:120280..120321Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1575043694:119966..120132TCONS_00064503-exon-scaffold_418-1575043694:119966..120132Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1575043694:119513..119653TCONS_00064503-exon-scaffold_418-1575043694:119513..119653Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1575043694:119307..119351TCONS_00064503-exon-scaffold_418-1575043694:119307..119351Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1575043694:119079..119178TCONS_00064503-exon-scaffold_418-1575043694:119079..119178Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1575043694:117909..118741TCONS_00064503-exon-scaffold_418-1575043694:117909..118741Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1510915933:127350..127429TCONS_00064503-exon-scaffold_418-1510915933:127350..127429Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1510915933:120567..120711TCONS_00064503-exon-scaffold_418-1510915933:120567..120711Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1510915933:120280..120321TCONS_00064503-exon-scaffold_418-1510915933:120280..120321Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1510915933:119966..120132TCONS_00064503-exon-scaffold_418-1510915933:119966..120132Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1510915933:119513..119653TCONS_00064503-exon-scaffold_418-1510915933:119513..119653Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1510915933:119307..119351TCONS_00064503-exon-scaffold_418-1510915933:119307..119351Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1510915933:119079..119178TCONS_00064503-exon-scaffold_418-1510915933:119079..119178Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1510915933:117909..118741TCONS_00064503-exon-scaffold_418-1510915933:117909..118741Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1491911889:127350..127429TCONS_00064503-exon-scaffold_418-1491911889:127350..127429Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1491911889:120567..120711TCONS_00064503-exon-scaffold_418-1491911889:120567..120711Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1491911889:120280..120321TCONS_00064503-exon-scaffold_418-1491911889:120280..120321Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1491911889:119966..120132TCONS_00064503-exon-scaffold_418-1491911889:119966..120132Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1491911889:119513..119653TCONS_00064503-exon-scaffold_418-1491911889:119513..119653Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1491911889:119307..119351TCONS_00064503-exon-scaffold_418-1491911889:119307..119351Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1491911889:119079..119178TCONS_00064503-exon-scaffold_418-1491911889:119079..119178Clytia hemisphaericaexon
TCONS_00064503-exon-scaffold_418-1491911889:117909..118741TCONS_00064503-exon-scaffold_418-1491911889:117909..118741Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_418supercontigscaffold_418:117909..127429 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
64.5102	61.311	56.9594	62.5459	29.9001	22.3089	40.8254	40.6637	47.4793	44.1999	34.5505	28.1821	28.932	23.0038	17.958	16.5742	36.1437	38.9671	18.6099	25.9102	39.456	37.6886	47.7663	45.5914	45.4817	45.9598	76.956	73.4949	57.3572	64.1439
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
IPR000928SNAP-25
Blast
[Close]
BLAST of TCONS_00064503 vs. Swiss-Prot (Human)
Match: SNP25 (Synaptosomal-associated protein 25 OS=Homo sapiens GN=SNAP25 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.956e-58
Identity = 104/203 (51.23%), Postives = 135/203 (66.50%), Query Frame = 1 
Query:  205 ADEVTDESLESTRRMLALAEETQDTGIKTLVALDEQGEKLNRVEENLDQINADMREAEKNLTGLEKFCGLCVCSCRRKQDFESSEQXXXXXXXXXXXXXXXXXXXRNNMQGGYDKAPAT------------GYIQKVTGDAREDEMDENIGQVAGIVDNLKSMAMDMGGELDKQNTQIDRITDKATANESRIDVANKRAENIL 777
            AD++ DESLESTRRML L EE++D GI+TLV LDEQGE+L R+EE +DQIN DM+EAEKNLT L KFCGLCVC C + +  ++ ++                    NN  G     PA             G+I++VT DARE+EMDEN+ QV+GI+ NL+ MA+DMG E+D QN QIDRI +KA +N++RID AN+RA  +L
Sbjct:   18 ADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLKSSDAYKKAWG-----------------NNQDGVVASQPARVVDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 203
The following BLAST results are available for this feature:
BLAST of TCONS_00064503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNP253.956e-5851.23Synaptosomal-associated protein 25 OS=Homo sapiens... [more]
back to top