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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064479 ID=TCONS_00064479|Name=TCONS_00064479|organism=Clytia hemisphaerica|type=transcript|length=556bp
TNGACCTCAAGATTTTGAAAGGGAATCAATACCCACAGAACCACCTCAAC
ACAACACAATGTTTACAGTTGACCGGCGGAAGATCAGTCTACTTTCCAGT
AAAGCTGATGGGACAGGTGCCTATCACAAATGGGGGAACAATAAAAAGTT
GTATTATTTTGATGGCTTAGCTTGTTTTTATGCCCTCAAAGAAGAGAATG
GGAATGTTTATATTAACACTAGACAGAATCCAGCTTCTACATGGCAGAAA
AAGCATGTAGACAAAAATTGTATTTATAAAGTCATAAGACATTATCGATA
CAACAAAAACAATGATTTCACACATTTAATTGTCGAACTGGAGAAGGATG
GTAATATGCTTGATTTTTATTATTTGCTTTATCGTTGGAAAAATGGTGTT
GAGAAGTTCATTGAATCTCCGCATGGCAACACAAAGAACCCTCTCCAAGG
AAACTACGCAAGGAAAGATCCACAGGCATTGCGCGAAGTAGAAGAAAACC
TCAAATCAGGAAAATCGTGTGAACAAGCATATTTCCATCACAATAAGGAA
AACGAG Run BLAST on NCBI protein sequence of TCONS_00064479-protein >TCONS_00064479-protein ID=TCONS_00064479-protein|Name=TCONS_00064479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
XPQDFERESIPTEPPQHNTMFTVDRRKISLLSSKADGTGAYHKWGNNKKL
YYFDGLACFYALKEENGNVYINTRQNPASTWQKKHVDKNCIYKVIRHYRY
NKNNDFTHLIVELEKDGNMLDFYYLLYRWKNGVEKFIESPHGNTKNPLQG
NYARKDPQALREVEENLKSGKSCEQAYFHHNKENE Run BLAST on NCBI transcript from alignment at scaffold_418:42311..43532+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064479 ID=TCONS_00064479|Name=TCONS_00064479|organism=Clytia hemisphaerica|type=transcript|length=1222bp|location=Sequence derived from alignment at scaffold_418:42311..43532+ (Clytia hemisphaerica)
TNGACCTCAAGATTTTGAAAGGGAATCAATACCCACAGAACCACCTCAAC
ACAACACAATGTTTACAGTTGACCGGCGGAAGATCAGTCTACTTTCCAGT
AAAGCTGATGGGACAGGTGCCTATCACAAATGGGGGAACAATAAAAAGTT
GTATTATTTTGATGGCTTAGCTTGTTTTTATGCCCTCAAAGAAGAGAATG
GGAATGTTTATATTAACACTAGACAGAATCCAGCTTCTACATGGCAGAAA
AAGCATGTAGACAAAAATTGTATTTATAAAGTCATAAGACATTATCGATA
CAACAAAAACAATGATTTCACACATTTAATTGTCGAACTGGAGAAGGATG
GTAATATGCTTGATTTTTATTATTTGCTTTATCGTTGGAAAAATGGTGTT
GAGAAGTTCATTGAATCTCCGCATGGCAACACAAAGAACCCTCTCCAAGG
TAATTGActcaatttttgtaaatttcctATTTTAGGCTGGGATAACAAGT
CTAACACAAATATTCATAGCGTTGTTACCTCGGATAACTAATAAGCACCC
CTCCTCTGCTtattaacattttttgaaaatttactaaCCTAACCGTTTGA
AAAGATTCAAGTAAAGTCTGTAATTATGGGATTTTGGATAGTGCTGCGAG
GGTAGACCTCACCTTATTCAGCTCCCACCTTATGAGATGCCTTGTACAAT
CAACTTAAGAAGTCCCACCTAAAAAAAGattaattcaatcaaaattttag
aCACACGTCTTGTGTATTTTGATGCAGGCAAATCTCacacttatttctac
catatgtgtagatatgtaaaaatcgtaaatttACCATATGTGTACAtatt
agaatccgtaaatctactaATGTGTAGATattgtaaatctaccatatgtg
tagatatgtaaaaacCCATAAATCTACCATATTAGTAGTTAAAGTATAAA
TACTATCCAGACAATCTAAGAAGAATTACAAATAACTATAttgaaaaaag
aacaacaaaccttaaccctaactatcaaagaacgacatatttcaaaCCCT
AACTGCCAACCAGAGTAATAAGCAAACTATCTTTGTTACTTAATTTCATT
ATTTCCTAACTTTAGGAAACTACGCAAGGAAAGATCCACAGGCATTGCGC
GAAGTAGAAGAAAACCTCAAATCAGGAAAATCGTGTGAACAAGCATATTT
CCATCACAATAAGGAAAACGAG Coding sequence (CDS) from alignment at scaffold_418:42311..43532+ >TCONS_00064479 ID=TCONS_00064479|Name=TCONS_00064479|organism=Clytia hemisphaerica|type=CDS|length=1110bp|location=Sequence derived from alignment at scaffold_418:42311..43532+ (Clytia hemisphaerica)
NGACCTCAAGATTTTGAAAGGGAATCAATACCCACAGAACCACCTCAACA
CAACACAATGTTTACAGTTGACCGGCGGAAGATCAGTCTACTTTCCAGTA
AAGCTGATGGGACAGGTGCCTATCACAAATGGGGGAACAATAAAAAGTTG
TATTATTTTGATGGCTTAGCTTGTTTTTATGCCCTCAAAGAAGAGAATGG
GAATGTTTATATTAACACTAGACAGAATCCAGCTTCTACATGGCAGAAAA
AGCATGTAGACAAAAATTGTATTTATAAAGTCATAAGACATTATCGATAC
AACAAAAACAATGATTTCACACATTTAATTGTCGAACTGGAGAAGGATGG
TAATATGCTTGATTTTTATTATTTGCTTTATCGTTGGAAAAATGGTGTTG
AGAAGTTCATTGAATCTCCGCATGGCAACACAAAGAACCCTCTCCAAGGA
AACTACGCAAGGAAAGATCCACAGGCATTGCGCGAAGTAGAAGAAAACCT
CAAATCAGGAAAATCGTGTGAACAAGCATATTTCCATCACAATAAGGAAA
ACGAGNGACCTCAAGATTTTGAAAGGGAATCAATACCCACAGAACCACCT
CAACACAACACAATGTTTACAGTTGACCGGCGGAAGATCAGTCTACTTTC
CAGTAAAGCTGATGGGACAGGTGCCTATCACAAATGGGGGAACAATAAAA
AGTTGTATTATTTTGATGGCTTAGCTTGTTTTTATGCCCTCAAAGAAGAG
AATGGGAATGTTTATATTAACACTAGACAGAATCCAGCTTCTACATGGCA
GAAAAAGCATGTAGACAAAAATTGTATTTATAAAGTCATAAGACATTATC
GATACAACAAAAACAATGATTTCACACATTTAATTGTCGAACTGGAGAAG
GATGGTAATATGCTTGATTTTTATTATTTGCTTTATCGTTGGAAAAATGG
TGTTGAGAAGTTCATTGAATCTCCGCATGGCAACACAAAGAACCCTCTCC
AAGGAAACTACGCAAGGAAAGATCCACAGGCATTGCGCGAAGTAGAAGAA
AACCTCAAATCAGGAAAATCGTGTGAACAAGCATATTTCCATCACAATAA
GGAAAACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064479-exon-scaffold_418-1491911889:42311..42759 | TCONS_00064479-exon-scaffold_418-1491911889:42311..42759 | Clytia hemisphaerica | exon |
| TCONS_00064479-exon-scaffold_418-1510915933:42311..42759 | TCONS_00064479-exon-scaffold_418-1510915933:42311..42759 | Clytia hemisphaerica | exon |
| TCONS_00064479-exon-scaffold_418-1575043694:42311..42759 | TCONS_00064479-exon-scaffold_418-1575043694:42311..42759 | Clytia hemisphaerica | exon |
| TCONS_00064479-exon-scaffold_418-1491911889:43426..43532 | TCONS_00064479-exon-scaffold_418-1491911889:43426..43532 | Clytia hemisphaerica | exon |
| TCONS_00064479-exon-scaffold_418-1510915933:43426..43532 | TCONS_00064479-exon-scaffold_418-1510915933:43426..43532 | Clytia hemisphaerica | exon |
| TCONS_00064479-exon-scaffold_418-1575043694:43426..43532 | TCONS_00064479-exon-scaffold_418-1575043694:43426..43532 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_418 | supercontig | scaffold_418:42311..43532 + |
Blast
The following BLAST results are available for this feature:
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