|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064468 ID=TCONS_00064468|Name=TCONS_00064468|organism=Clytia hemisphaerica|type=transcript|length=1983bp
ttactttatatcatctttaaaagtttttttagcaTCCTACATTTAACTTT
CCGAACATTCTTCGCAAGACATGGTTGAGGTTATTTTTCGATGGGACCCC
TTACAGTACCACAGGAAAAGTCTACCAAAATAAGTACACCCCTGTGtaac
agacccggtgggacccccgCGCCACTGAGAAAATGAGCTCAAAATTCGTC
GCCGGTTGAGGAAATTTCCTCAAATTTCGTCCCCATTAGGAAAACTGGAG
TATTACTATCTCCACTGTAAAGTTTTGGTCTGAATTTGCcgtccccactg
gattttttggactgaaaacaatggaaataaaTATCCCAGTTATAAAATTG
AAAGGGATTCTTAATCCCCACTGGGATATTTGTTCTCAATTTTATTCCCG
CTGACCATGAAATTTCCACCAggtcagtgagacaggggtgtataatttAA
GATCACTCAGCTTCATTTCTTCACTGGGGCTATTATAGAGCATATTTTTC
ACCGGGTTATTCACTGGGGCGTATCTGACCGGGTCACTGATTCAGGGGTG
TAATACATATGAAAAAACCCGAAAGACACAAAATATCCTGGAAAATATCA
TATATAAATAATATTATAAATATCAATATTCTAGGTCAGTCACCTGTTTT
GTTGCTACTGTACAGACCAGAATGTCAAATTTGTTAAGATCACAAATTGG
GTTATTTCGGGTTAAACTTGTTTCTGATAGCTGATTTGTCGAATAAAAAC
ATTTACTTACGAAAAAAGTTTGGTCCCATGGGTATTTGGTACTTTACTGA
CCGGTCTGTGATATACACGTTGACCCCCTTCCAGAATAAAAGAGCTACTA
AAGCTTTTGACTTGAAATTTTAACCTATGATAGGTCTTGACCAGACGATA
TACAAAATTTCAAGCCAATCGGTTACGTTGGCCGTATTTCATGGACCATT
CAGTATTTTACCCAAAATGCTCACTTTCTGGAAAACCACCTGTCCAATTT
CACTGAGAATTTGACATTAAGCTTCTATCATCACTACTTGTCGCTggttt
aaatttcaagtcaataccTTATTTCTATCCAGAGATATAAATTTTGGGCC
TAAATTTGGCAATTAGAGCATGCATTTTTGGgcctgtaaaatacacacat
aTAGCAGGTCAAAAGAATTTACCTTCATCCCCAAAATTATATGTCTTCAA
AATTAATCTCTTAAGGAGTAGCAACaaaaaatttgagtaaaaaatatgaa
tgtgaaaaaagtttgagGGTTGTCCTATTTTCAGCCTTTTTAAAGGATGG
TGACGTCCTTGTGACgcaatgacgtcataaatgatggcGAAATTTTGCTC
AGAGTTGACGATAAATATTTTGTTCACACTGGCAAAATTGCAAGTCGTTT
GAATAAGTATTTCTAAAGTTGTCAAATATAGACCCCCAAAGATGCACGAA
GGGTTAATATAATAAAGAATTTATTGAGACATTTAGCTTCTTTTTAAGTT
TAATACTGCTTCAGATTTGGCTTAACattgtttcttcatttttatcacaa
aaaatcagaaaagccTTTAGCCTCTAATTCCTAgatattttgtatttggt
tataAATACTGCAAAATACACGAATCTGGCAGGTGGCAGAAAAAATTGAC
ACATCTAAAAATCATTTATTAAGTTGAGTTtatatgcaaaatttcaaaga
aaattatgaagGTGAAAAAAAGTTCGACGGGGGTCCTTTcttgacatttt
caaaatttgttgaCATCATCATgtcatgatgacgtcattagaaatgacaa
aattttgtCAGAAAGTGTCAATCCACATTCCCCACACACTGGCAAAATTT
CATGACAAAATTCAAAGTCATTGAAGATTTTCGTTCAGGAACCTTACTCT
GTGGGAGCTGACTACCCCCCCcccaagaaaaaataaaaaaaaaatacaat
tttttgtgAATGACAAATTTCAGAAGAATCTTG Run BLAST on NCBI transcript from alignment at scaffold_415:347812..349794 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064468 ID=TCONS_00064468|Name=TCONS_00064468|organism=Clytia hemisphaerica|type=transcript|length=1983bp|location=Sequence derived from alignment at scaffold_415:347812..349794 (Clytia hemisphaerica)
CAAGATTCTTCTGAAATTTGTCATTcacaaaaaattgtatttttttttta
ttttttcttgggGGGGGGGTAGTCAGCTCCCACAGAGTAAGGTTCCTGAA
CGAAAATCTTCAATGACTTTGAATTTTGTCATGAAATTTTGCCAGTGTGT
GGGGAATGTGGATTGACACTTTCTGacaaaattttgtcatttctaatgac
gtcatcatgacATGATGATGtcaacaaattttgaaaatgtcaagAAAGGA
CCCCCGTCGAACTTTTTTTCACcttcataattttctttgaaattttgcat
ataAACTCAACTTAATAAATGATTTTTAGATGTGTCAATTTTTTCTGCCA
CCTGCCAGATTCGTGTATTTTGCAGTATTtataaccaaatacaaaatatc
TAGGAATTAGAGGCTAAAggcttttctgattttttgtgataaaaatgaag
aaacaatGTTAAGCCAAATCTGAAGCAGTATTAAACTTAAAAAGAAGCTA
AATGTCTCAATAAATTCTTTATTATATTAACCCTTCGTGCATCTTTGGGG
GTCTATATTTGACAACTTTAGAAATACTTATTCAAACGACTTGCAATTTT
GCCAGTGTGAACAAAATATTTATCGTCAACTCTGAGCAAAATTTCgccat
catttatgacgtcattgcGTCACAAGGACGTCACCATCCTTTAAAAAGGC
TGAAAATAGGACAACCctcaaacttttttcacattcatattttttactca
aattttttGTTGCTACTCCTTAAGAGATTAATTTTGAAGACATATAATTT
TGGGGATGAAGGTAAATTCTTTTGACCTGCTAtatgtgtgtattttacag
gcCCAAAAATGCATGCTCTAATTGCCAAATTTAGGCCCAAAATTTATATC
TCTGGATAGAAATAAggtattgacttgaaatttaaaccAGCGACAAGTAG
TGATGATAGAAGCTTAATGTCAAATTCTCAGTGAAATTGGACAGGTGGTT
TTCCAGAAAGTGAGCATTTTGGGTAAAATACTGAATGGTCCATGAAATAC
GGCCAACGTAACCGATTGGCTTGAAATTTTGTATATCGTCTGGTCAAGAC
CTATCATAGGTTAAAATTTCAAGTCAAAAGCTTTAGTAGCTCTTTTATTC
TGGAAGGGGGTCAACGTGTATATCACAGACCGGTCAGTAAAGTACCAAAT
ACCCATGGGACCAAACTTTTTTCGTAAGTAAATGTTTTTATTCGACAAAT
CAGCTATCAGAAACAAGTTTAACCCGAAATAACCCAATTTGTGATCTTAA
CAAATTTGACATTCTGGTCTGTACAGTAGCAACAAAACAGGTGACTGACC
TAGAATATTGATATTTATAATATTATTTATATATGATATTTTCCAGGATA
TTTTGTGTCTTTCGGGTTTTTTCATATGTATTACACCCCTGAATCAGTGA
CCCGGTCAGATACGCCCCAGTGAATAACCCGGTGAAAAATATGCTCTATA
ATAGCCCCAGTGAAGAAATGAAGCTGAGTGATCTTaaattatacacccct
gtctcactgaccTGGTGGAAATTTCATGGTCAGCGGGAATAAAATTGAGA
ACAAATATCCCAGTGGGGATTAAGAATCCCTTTCAATTTTATAACTGGGA
TAtttatttccattgttttcagtccaaaaaatccagtggggacgGCAAAT
TCAGACCAAAACTTTACAGTGGAGATAGTAATACTCCAGTTTTCCTAATG
GGGACGAAATTTGAGGAAATTTCCTCAACCGGCGACGAATTTTGAGCTCA
TTTTCTCAGTGGCGcgggggtcccaccgggtctgttaCACAGGGGTGTAC
TTATTTTGGTAGACTTTTCCTGTGGTACTGTAAGGGGTCCCATCGAAAAA
TAACCTCAACCATGTCTTGCGAAGAATGTTCGGAAAGTTAAATGTAGGAt
gctaaaaaaacttttaaagatgatataaagtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064468-exon-scaffold_415-1491911889:347812..349794 | TCONS_00064468-exon-scaffold_415-1491911889:347812..349794 | Clytia hemisphaerica | exon |
| TCONS_00064468-exon-scaffold_415-1510915933:347812..349794 | TCONS_00064468-exon-scaffold_415-1510915933:347812..349794 | Clytia hemisphaerica | exon |
| TCONS_00064468-exon-scaffold_415-1575043694:347812..349794 | TCONS_00064468-exon-scaffold_415-1575043694:347812..349794 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_415 | supercontig | scaffold_415:347812..349794 . |
Blast
The following BLAST results are available for this feature:
|
