TCONS_00064455 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064455
Unique NameTCONS_00064455
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1602

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064455 ID=TCONS_00064455|Name=TCONS_00064455|organism=Clytia hemisphaerica|type=transcript|length=1602bp
TCATTACCAGCGACGAGCGAGAAGAAACTATCGTTAAAGCACTGACCCTA
TACAAAGGAATACTACCGGAAGAAGCATTTTACAATAGTCCAACCGGGCC
CGACATTTTTATGACAGACAATTGTGGTGAACTACGGAATAGTCTGCATA
AGATATGGCCTGATTCAACTTTGCTTCTTTGCATTTTTCATATTCTCCAG
CAAGTCTGGAGATGGTTGTATGATAAAAATCATGGGGTATCTCAAAACGA
TAGGGTTGAAATTATGAAGCTGTTTAAGAATGTCATTTACGCACTAAACT
TGGAGGAATTTGAAGAGACTTCAGTCCTGCTTCAGGAGTCGAATGTTACG
TCAAAATACGAACATTGCATTTCATACTTTGAAGAACTGTTTTCATTAAG
CAAAAGTTGGGCAAAATGTTTTCGTTCTGAAATTCTAATCCGTGGTTCAC
ACACCAATAACTATGTGGAATCTCAATTTCTCGTTATCAAGGATTCAATT
TTGAGACGACAACGTCAATTTAACATCAACATGTTGCTGGATAAATTGAT
GGTTGAATTCGAGGACCACTATAAGAATCGCTTACTTTCAATTGCAGACA
GTACATTCGATGGAGTATATAGTCAGCGGTTTAAGcagatcaaattaaaa
aaagtgccAGAATCTTACGATACCAAAAGTAATGTCAAAGAGATAGCTTC
TGATTTGTTCACCGTCAAAAGCAAAAGTGATGAAAAGCTGGACTATTTAG
TTGACATGTCCATTGGAGTGTGTGAATGTGTAGCAGGAAGAGATGGTTCA
CCTTGTTGGCACCAGTGCATATTATGGAAAGAAGGTTTTGCAAGGTCAGG
GAATTTCTTACCGAAATTCGATAAATTTGAACGCAAAAGATTCGCTGAAA
TTGCATTAGGAGAGTCACTCGATATCTCATACTATGAATCCATTCATTCT
GATATTAATATCCATGACCCTGAAATCTACAAATCTACGAATCTAGAATC
TACCAATGATCAAAATATGAAGCAACCACGCAACATCGAAGAAGCTTTCG
GAGATACTAACGATAATAAAACAGATTTAGCTTTGAATCACTTTGGACAG
TTTTCTGAAGCAATGTTAGAAAAAATCCAACAAGGTAATAAGGAATTTAA
TGTAGCTGTCATCAAGTTCGTCAAACGTTTTGAAACTCTTAGTCAAAATC
AAAGAGTTTCTTCATTACAGAGTTTTGGTAGTACGTTCTATGGAAGGAAA
CGCTCAAAAATCAAAGTTCAACCAACGGCAGTTTCTAGAAGAAAGTCTGG
CATCGGCAGCCGTCAAAAGCAAAGTAATTCCAAGCACAGAAGTTTACCAA
ATCGACACGTGAATTTAAAGAGGAAGCATAATATTACACGTGCTATAAAT
GAAAATGTACCTCCAGCCAAAAAAGGTGGCGGTCGTTCGATGGTTAGCAA
CACTAAGCACTTTGTAAAGCAAccaataaagaattaaaaagtgaaaaaca
tgACACTATTTTTTGTATTGATGCCACAATTATTTAGTTTTATAgtttat
tttgagtttttttggtaCATTCTTTTATTAAGGTTCTTTTCTAGGAAtat
ca
Run BLAST on NCBI

protein sequence of TCONS_00064455-protein

>TCONS_00064455-protein ID=TCONS_00064455-protein|Name=TCONS_00064455-protein|organism=Clytia hemisphaerica|type=polypeptide|length=494bp
ITSDEREETIVKALTLYKGILPEEAFYNSPTGPDIFMTDNCGELRNSLHK
IWPDSTLLLCIFHILQQVWRWLYDKNHGVSQNDRVEIMKLFKNVIYALNL
EEFEETSVLLQESNVTSKYEHCISYFEELFSLSKSWAKCFRSEILIRGSH
TNNYVESQFLVIKDSILRRQRQFNINMLLDKLMVEFEDHYKNRLLSIADS
TFDGVYSQRFKQIKLKKVPESYDTKSNVKEIASDLFTVKSKSDEKLDYLV
DMSIGVCECVAGRDGSPCWHQCILWKEGFARSGNFLPKFDKFERKRFAEI
ALGESLDISYYESIHSDINIHDPEIYKSTNLESTNDQNMKQPRNIEEAFG
DTNDNKTDLALNHFGQFSEAMLEKIQQGNKEFNVAVIKFVKRFETLSQNQ
RVSSLQSFGSTFYGRKRSKIKVQPTAVSRRKSGIGSRQKQSNSKHRSLPN
RHVNLKRKHNITRAINENVPPAKKGGGRSMVSNTKHFVKQPIKN
Run BLAST on NCBI

transcript from alignment at scaffold_415:338304..340544-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064455 ID=TCONS_00064455|Name=TCONS_00064455|organism=Clytia hemisphaerica|type=transcript|length=2241bp|location=Sequence derived from alignment at scaffold_415:338304..340544- (Clytia hemisphaerica)
TCATTACCAGCGACGAGCGAGAAGAAACTATCGTTAAAGCACTGACCCTA
TACAAAGGAATACTACCGGAAGAAGCATTTTACAATAGTCCAACCGGGCC
CGACATTTTTATGACAGACAATTGTGGTGAACTACGGAATAGTCTGCATA
AGATATGGCCTGATTCAACTTTGCTTCTTTGCATTTTTCATATTCTCCAG
CAAGTCTGGAGATGGTTGTATGATAAAAATCATGGGGTATCTCAAAACGA
TAGGGTTGAAATTATGAAGCTGTTTAAGAATGTCATTTACGCACTAAACT
TGGAGGAATTTGAAGAGACTTCAGTCCTGCTTCAGGAGTCGAATGTTACG
TCAAAATACGAACATTGCATTTCATACTTTGAAGAACTGTTTTCATTAAG
CAAAAGTTGGGCAAAATGTTTTCGTTCTGAAATTCTAATCCGTGGTTCAC
ACACCAATAACTATGTGGAATCTCAATTTCTCGTTATCAAGGATTCAATT
TTGAGACGACAACGTCAATTTAACATCAACATGTTGCTGGATAAATTGAT
GGTTGAATTCGAGGACCACTATAAGAATCGCTTACTTTCAATTGCAGACA
GTACATTCGATGGAGTATATAGTCAGCGGTTTAAGCAGATCAAATTAAAA
AAAGTGCCAGGTAAATTTTGCCTGCCTTAAATTATTGAGAAAAACAGCAG
TCTTCTATGACCTCCTCCAGGTTTTCAGGTCCCCCATCTGGGGCCTAATA
CTCCCATTTGGTCTTTTCCAGCTATCCTTTTTCTGGGGCTCCCCCCCTAC
TGGAAGAATATTTTTGTAACCAACAGATTCGACCGTACAGCTTCCGATCC
ATAACAATTTTTGGATGATACTTTCCTCTTCAAAAGATTACTTATAGGGA
TTCCTGTTTTTGTCATAAATTTACGAGGAGAGTCCTGTTTATCTCAAAAA
TTTAATGGGAGCTGCTTTCTTTCTCAAAAGTACTTGGACCTGGTTTCTTT
GACCTCATGTCCGACCTGGGTCCTGTTTTTACAGTACGCCTTCAAAAACA
AAGAAAGGGTGTCCTGTCTGAATTATTAGCAATTAAGTGTAAGTTAGAGA
CTGTTAATTGAAAATTTAGAATGAAACATTTATATTGAAAATAAAAGCTA
AAGTAAAGCTAACGATTTATTTTTCCAAAAATGAAAGAAGTCAAATTGTC
ACTTTTTTTTTCGAAAATTGCAACTAATCAACTGTTTAACTCATTCTTTT
AAGTTTTGATCGGGTCTTTAGTTTCCCATTGATTTTTTTTCATTCTCAGA
ATCTTACGATACCAAAAGTAATGTCAAAGAGATAGCTTCTGATTTGTTCA
CCGTCAAAAGCAAAAGTGATGAAAAGCTGGACTATTTAGTTGACATGTCC
ATTGGAGTGTGTGAATGTGTAGCAGGAAGAGATGGTTCACCTTGTTGGCA
CCAGTGCATATTATGGAAAGAAGGTTTTGCAAGGTCAGGGAATTTCTTAC
CGAAATTCGATAAATTTGAACGCAAAAGATTCGCTGAAATTGCATTAGGA
GAGTCACTCGATATCTCATACTATGAATCCATTCATTCTGATATTAATAT
CCATGACCCTGAAATCTACAAATCTACGAATCTAGAATCTACCAATGATC
AAAATATGAAGCAACCACGCAACATCGAAGAAGCTTTCGGAGATACTAAC
GATAATAAAACAGATTTAGCTTTGAATCACTTTGGACAGTTTTCTGAAGC
AATGTTAGAAAAAATCCAACAAGGTAATAAGGAATTTAATGTAGCTGTCA
TCAAGTTCGTCAAACGTTTTGAAACTCTTAGTCAAAATCAAAGAGTTTCT
TCATTACAGAGTTTTGGTAGTACGTTCTATGGAAGGAAACGCTCAAAAAT
CAAAGTTCAACCAACGGCAGTTTCTAGAAGAAAGTCTGGCATCGGCAGCC
GTCAAAAGCAAAGTAATTCCAAGCACAGAAGTTTACCAAATCGACACGTG
AATTTAAAGAGGAAGCATAATATTACACGTGCTATAAATGAAAATGTACC
TCCAGCCAAAAAAGGTGGCGGTCGTTCGATGGTTAGCAACACTAAGCACT
TTGTAAAGCAACCAATAAAGAATTAAAAAGTGAAAAACATGACACTATTT
TTTGTATTGATGCCACAATTATTTAGTTTTATAGTTTATTTTGAGTTTTT
TTGGTACATTCTTTTATTAAGGTTCTTTTCTAGGAATATCA

Coding sequence (CDS) from alignment at scaffold_415:338304..340544-

>TCONS_00064455 ID=TCONS_00064455|Name=TCONS_00064455|organism=Clytia hemisphaerica|type=CDS|length=2970bp|location=Sequence derived from alignment at scaffold_415:338304..340544- (Clytia hemisphaerica)
AATCTTACGATACCAAAAGTAATGTCAAAGAGATAGCTTCTGATTTGTTC
ACCGTCAAAAGCAAAAGTGATGAAAAGCTGGACTATTTAGTTGACATGTC
CATTGGAGTGTGTGAATGTGTAGCAGGAAGAGATGGTTCACCTTGTTGGC
ACCAGTGCATATTATGGAAAGAAGGTTTTGCAAGGTCAGGGAATTTCTTA
CCGAAATTCGATAAATTTGAACGCAAAAGATTCGCTGAAATTGCATTAGG
AGAGTCACTCGATATCTCATACTATGAATCCATTCATTCTGATATTAATA
TCCATGACCCTGAAATCTACAAATCTACGAATCTAGAATCTACCAATGAT
CAAAATATGAAGCAACCACGCAACATCGAAGAAGCTTTCGGAGATACTAA
CGATAATAAAACAGATTTAGCTTTGAATCACTTTGGACAGTTTTCTGAAG
CAATGTTAGAAAAAATCCAACAAGGTAATAAGGAATTTAATGTAGCTGTC
ATCAAGTTCGTCAAACGTTTTGAAACTCTTAGTCAAAATCAAAGAGTTTC
TTCATTACAGAGTTTTGGTAGTACGTTCTATGGAAGGAAACGCTCAAAAA
TCAAAGTTCAACCAACGGCAGTTTCTAGAAGAAAGTCTGGCATCGGCAGC
CGTCAAAAGCAAAGTAATTCCAAGCACAGAAGTTTACCAAATCGACACGT
GAATTTAAAGAGGAAGCATAATATTACACGTGCTATAAATGAAAATGTAC
CTCCAGCCAAAAAAGGTGGCGGTCGTTCGATGGTTAGCAACACTAAGCAC
TTTGTAAAGCAACCAATAAAGAATTAAATTACCAGCGACGAGCGAGAAGA
AACTATCGTTAAAGCACTGACCCTATACAAAGGAATACTACCGGAAGAAG
CATTTTACAATAGTCCAACCGGGCCCGACATTTTTATGACAGACAATTGT
GGTGAACTACGGAATAGTCTGCATAAGATATGGCCTGATTCAACTTTGCT
TCTTTGCATTTTTCATATTCTCCAGCAAGTCTGGAGATGGTTGTATGATA
AAAATCATGGGGTATCTCAAAACGATAGGGTTGAAATTATGAAGCTGTTT
AAGAATGTCATTTACGCACTAAACTTGGAGGAATTTGAAGAGACTTCAGT
CCTGCTTCAGGAGTCGAATGTTACGTCAAAATACGAACATTGCATTTCAT
ACTTTGAAGAACTGTTTTCATTAAGCAAAAGTTGGGCAAAATGTTTTCGT
TCTGAAATTCTAATCCGTGGTTCACACACCAATAACTATGTGGAATCTCA
ATTTCTCGTTATCAAGGATTCAATTTTGAGACGACAACGTCAATTTAACA
TCAACATGTTGCTGGATAAATTGATGGTTGAATTCGAGGACCACTATAAG
AATCGCTTACTTTCAATTGCAGACAGTACATTCGATGGAGTATATAGTCA
GCGGTTTAAGCAGATCAAATTAAAAAAAGTGCCAGAATCTTACGATACCA
AAAGTAATGTCAAAGAGATAGCTTCTGATTTGTTCACCGTCAAAAGCAAA
AGTGATGAAAAGCTGGACTATTTAGTTGACATGTCCATTGGAGTGTGTGA
ATGTGTAGCAGGAAGAGATGGTTCACCTTGTTGGCACCAGTGCATATTAT
GGAAAGAAGGTTTTGCAAGGTCAGGGAATTTCTTACCGAAATTCGATAAA
TTTGAACGCAAAAGATTCGCTGAAATTGCATTAGGAGAGTCACTCGATAT
CTCATACTATGAATCCATTCATTCTGATATTAATATCCATGACCCTGAAA
TCTACAAATCTACGAATCTAGAATCTACCAATGATCAAAATATGAAGCAA
CCACGCAACATCGAAGAAGCTTTCGGAGATACTAACGATAATAAAACAGA
TTTAGCTTTGAATCACTTTGGACAGTTTTCTGAAGCAATGTTAGAAAAAA
TCCAACAAGGTAATAAGGAATTTAATGTAGCTGTCATCAAGTTCGTCAAA
CGTTTTGAAACTCTTAGTCAAAATCAAAGAGTTTCTTCATTACAGAGTTT
TGGTAGTACGTTCTATGGAAGGAAACGCTCAAAAATCAAAGTTCAACCAA
CGGCAGTTTCTAGAAGAAAGTCTGGCATCGGCAGCCGTCAAAAGCAAAGT
AATTCCAAGCACAGAAGTTTACCAAATCGACACGTGAATTTAAAGAGGAA
GCATAATATTACACGTGCTATAAATGAAAATGTACCTCCAGCCAAAAAAG
GTGGCGGTCGTTCGATGGTTAGCAACACTAAGCACTTTGTAAAGCAACCA
ATAAAGAATTAAATTACCAGCGACGAGCGAGAAGAAACTATCGTTAAAGC
ACTGACCCTATACAAAGGAATACTACCGGAAGAAGCATTTTACAATAGTC
CAACCGGGCCCGACATTTTTATGACAGACAATTGTGGTGAACTACGGAAT
AGTCTGCATAAGATATGGCCTGATTCAACTTTGCTTCTTTGCATTTTTCA
TATTCTCCAGCAAGTCTGGAGATGGTTGTATGATAAAAATCATGGGGTAT
CTCAAAACGATAGGGTTGAAATTATGAAGCTGTTTAAGAATGTCATTTAC
GCACTAAACTTGGAGGAATTTGAAGAGACTTCAGTCCTGCTTCAGGAGTC
GAATGTTACGTCAAAATACGAACATTGCATTTCATACTTTGAAGAACTGT
TTTCATTAAGCAAAAGTTGGGCAAAATGTTTTCGTTCTGAAATTCTAATC
CGTGGTTCACACACCAATAACTATGTGGAATCTCAATTTCTCGTTATCAA
GGATTCAATTTTGAGACGACAACGTCAATTTAACATCAACATGTTGCTGG
ATAAATTGATGGTTGAATTCGAGGACCACTATAAGAATCGCTTACTTTCA
ATTGCAGACAGTACATTCGATGGAGTATATAGTCAGCGGTTTAAGCAGAT
CAAATTAAAAAAAGTGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040418XLOC_040418Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064455-proteinTCONS_00064455-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064455-exon-scaffold_415-1575043694:339885..340544TCONS_00064455-exon-scaffold_415-1575043694:339885..340544Clytia hemisphaericaexon
TCONS_00064455-exon-scaffold_415-1575043694:338304..339245TCONS_00064455-exon-scaffold_415-1575043694:338304..339245Clytia hemisphaericaexon
TCONS_00064455-exon-scaffold_415-1510915933:339885..340544TCONS_00064455-exon-scaffold_415-1510915933:339885..340544Clytia hemisphaericaexon
TCONS_00064455-exon-scaffold_415-1510915933:338304..339245TCONS_00064455-exon-scaffold_415-1510915933:338304..339245Clytia hemisphaericaexon
TCONS_00064455-exon-scaffold_415-1491911889:339885..340544TCONS_00064455-exon-scaffold_415-1491911889:339885..340544Clytia hemisphaericaexon
TCONS_00064455-exon-scaffold_415-1491911889:338304..339245TCONS_00064455-exon-scaffold_415-1491911889:338304..339245Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_415supercontigscaffold_415:338304..340544 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0759869	0.115303	0.0288368	0	0.171729	0.258725	0.971508	1.08114	0.826779	0.909168	0.797734	0.671208	0.47125	0.272079	0.490761	0.477185	0.215939	0.390415	0.0541473	0.0283306	0.353277	0.238386	0.235577	0.0747678	1.02553	1.34201	1.025	0.27678	0.254413	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064455 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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