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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064435 ID=TCONS_00064435|Name=TCONS_00064435|organism=Clytia hemisphaerica|type=transcript|length=1903bp
GAAACTGAGAGAGAAACATAACTATTTAAGACGAAAATCGTTGAATTGAT
TAGATTTCAAGACTCGGTTAACGCGGATAAGACCTACAGACAACAAACTA
ACAACGAAGATAACCAACAAAGATTATACGTAATAACCAGTGACATCACA
CCTTCCAAAGCAAcgattttggaaaaacacaTAATATATTCAGACGTTCA
CACCTTTtcaaagtagttttaataacaATCTTCCACCATTTCACACCCAG
CGGCACCACCACCACAAGAAGATATGGCTTGGCCTTCACCTTACAACGGT
ATACCATCGTATTCACCAATGCCGCCCAACTGCATTGGATTTCCATACCA
CCCTAGTGGCGTTAACGTTCATTATCCACTAGCTCCTAGTTGTGGAGTGT
TCCCAAGAAAGCAGCGACGGGAGCGGACCACTTTTACAAAATCTCAACTG
GAAATATTGGAAGACCTATTCGCTAAGACTCATTATCCAGACATATTTAT
GCGAGAAGAGGCTGCAAGGAAAATCAATCTTCCAGAATCTAGAGTTCAAG
TCTGGTTCAAAAATCGTCGAGCAAAACACAGACAGAAGGCTAAACAAGAC
AAAGAGAAAACCTCGAAAAAGACTTCAAACTCAACTTCAAGCGACACCAG
CGAACTCAGTAAGACAGGATCAATATCACCAGCACCATCAATCAGTCCAA
AAGTCAGTAACATTGTCGCCTCACCACCAGAGAGCCCGAGCTACAAAACA
ACGATATCGACCCCATCATCCAACATGAACTCCATCTGGAGTCCTGCTAA
AAACCCATCACCATACGAAGCACCACGTACCGTATCTCCTATCCTCAGCC
CCTGTGCAGGAGGAGGGGGTAGCAACCCTGGTAGTGGGGGTGGTTCCTCC
TATAACCAAAGCAGCTCCTCTCTATACACTCATACACCTTACAATATGTC
ACATACGAGGAACGACTACCCTCAGTATGGTACCATGCCCTTTTCAACGT
CGGTAGGAGGGCATAGTAATCATAACTCGAGTGATATAATGGACTTCCCA
AACGAATATCATCCTCAACAGAGTGCTCCTTGGTATTCCAGCATGTAAAA
GTCTAGAATGTATAGGTAGAAGTAAACTGGTGTAAAGATTAATAAACGAA
ATATTGTTTTTTAAAGAGACCTTTGTATATAGTGTTTAGGAacagtcaat
ttttttatttttttttttaaatgtagatttttcaagttatcATATTCGAG
TTTACCAACTCTAGATTAACTCGGTGACTATCAAAATAGGTTTTTGAGTC
TTTCTATGTTGCGTGAAGATCTGGTTCTTAATGTGGAGAAGTTTTAGAAT
GTTTTCAATGGAATGGTTACAAAGTTTTATCAAAGCTTTTATTGAACTTC
TGATGAGTAGAGCTTATGATTCAAAACTTATAATCACAATGTctcatttt
cacaaattttcaaaaacattgttTCCAGGCTAATCTAGCTTTAAACCAGC
GTCGTGTATGTTAGATGGAGGTTGTTTTGGCGTTTCTTGTGAAAAAAATG
CCTTTTATTTGGTACTGGTGTCGAATTTAAGGCTTACGAATTTTAGAGTT
tcttttcatgttatttttgaaaacataaaatgtatattttctagattaaa
aaaattacgcaaagatatattttttgatatattttgctCATTATTTAAAc
atcttttaatttttgttatatTAACTATTTCTTTATAAATAAGTATTTAC
AGTATTATAAATCGAGTTAAAAAAGTCACATTAAAATCTGTAATTCTAAT
TGTCAGTTTTTAAACCCATCAAAAATTGAACacacagttgatgctctcta
attcgattttcaaggggaatagaatttttgtcgaataagggagcgcaTTG
AAT Run BLAST on NCBI protein sequence of Otx-related-2 >TCONS_00064435-protein ID=TCONS_00064435-protein|Name=Otx-related-2|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MAWPSPYNGIPSYSPMPPNCIGFPYHPSGVNVHYPLAPSCGVFPRKQRRE
RTTFTKSQLEILEDLFAKTHYPDIFMREEAARKINLPESRVQVWFKNRRA
KHRQKAKQDKEKTSKKTSNSTSSDTSELSKTGSISPAPSISPKVSNIVAS
PPESPSYKTTISTPSSNMNSIWSPAKNPSPYEAPRTVSPILSPCAGGGGS
NPGSGGGSSYNQSSSSLYTHTPYNMSHTRNDYPQYGTMPFSTSVGGHSNH
NSSDIMDFPNEYHPQQSAPWYSSM Run BLAST on NCBI transcript from alignment at scaffold_415:236471..250360+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064435 ID=TCONS_00064435|Name=TCONS_00064435|organism=Clytia hemisphaerica|type=transcript|length=13890bp|location=Sequence derived from alignment at scaffold_415:236471..250360+ (Clytia hemisphaerica)
GAAACTGAGAGAGAAACATAACTATTTAAGACGAAAATCGTTGAATTGAT
TAGATTTCAAGACTCGGTTAACGCGGATAAGACCTACAGGTAAGCGCTTT
AAAACCAATGtttctattttctttcaaatgtcaTCGAGAATAAGAAGGTG
TATTTAGAGGGTTGTGTTCTCTTAAATGTGAAACTGATTAGAAGTAAAAA
CTACTTCTTATGCTAAATCTTTAACCAGTTAGATCTTCCCCAAGACAAAT
AACCCAACCCCTTTTTAGTTTAAGTATTTTAACCCTGGATTTTCATTTCT
GAGTATAAAAATTATCTTGATAATCAATGATTAGAAGTATGTTTGTTAGT
TTAAGTAAACTCGTAAGATTTCTCCTAAACTCTTACTTAAGTCTAAGAGA
TGTCTGATTTATTCCTTAAGTAAGATTATATTAACGCTAGTCATAAATCC
ATATTGTAGAAAATCCATATCTTTAGCTTTGAAATAGAAATCTTATTTAA
GGTATTAGTTTAATGAGCTACAAGTTAGAGCGATCGTGTCCATAGGCGAA
GCGAGattaccctgcaaaatttatgtgGGAGTGCAGACATTTAGGAcaca
ttatcttttgataaaacaaagacaataattacagtgtcgtaaaaaccgtt
CTCATCCATAAactttgcagggtatctcgctacgcctatgcttAAAAGGA
TGTCATAGAATCGAATACTGTAGTAATGATTGAAAAGTCTGAAGTGTAGT
TTATATTGGTATAACACTGTGGAACTTTTTCTAAAAGATTCCCATTCATA
CATTTAAACGAAAAAGCATAAAAATTTCCGGAGAGGGCAAAATCCCGGGG
CAATTGGGAAAAATTCCTTGGGACAATTTCCCTagaatctttaaattttt
taaaatatttttgacgaGCTTTTCGATACAATTTTCAAATCTTAGAAATA
TtatcaatcaaagttgaaaactgattttttacgTGGTAAGAAAATTTTGA
TCTTTGACATGTTTTGACATCGTTTGAgtgatcaaaatttcaaaaacatt
ttctttctaaaAGTTGAATGCGTCACTATGTGACacattaaaaaattaca
aaaattaatgttttctcAATTTCAGCGTTCCTATAGATTTATTATCAATG
CCATATAGCTAGACTACTCCAATCCTAATCTATCACTACATTAGTTGTCC
ACTTCGTATCAGTTTGAACCGTTGCAATTTACTTTACACATacataaaat
atataaagtatATTTTTGGAGACCAAGAAAATcatgttgaaaaaaatttt
ttacccaAATTGTCATCAAAATTGTATTATAAAGTCAATCATTtaaattt
taatatatttttcggTATTTTACCAAAATCGGAGtattattttcttgaaa
tacaGGAAGTTATCAGTTAAAATAACAGTCAACCGGCCACTAAAATAATT
AGATCATAATAAAATAAGCTGTTGTAGTTTAAAGCAATTTCTGCTGAAGA
TACATCCTGGGTGGTCGGAGAACCTAcgccaattttgaaataaaaactgt
AATAGAACAACATTTTCCCTTAATAAAGAAATTCATGAATTTTCTGGACT
TGATGCTTATTAGGCAAGCTTACAAGTGTTACATTATGTGAATCGGTTTT
GTTTATGTTGGTACGGTATACACGAGGCACTTCAATACTTTCAAAAGCTA
AGAATAAACAATACAGATACCGCAACTATTTTTGGAAGATGGTACTTTAG
tactaaaataaatatttttcacttatattttgattattttgtcaGCAATG
ATGTgtcaaaaacttgtaaaatCACAGTTCTTTAAGTAAGCATAATTATT
ATCTTGACTTGCTTTAGCTTAATAATTTCCGCatagaaattttaaccaaa
aatatTCTACAGTTTCTTAAGTTTGATcggtaaaaataaaatcagaatCG
AAACATTCTTATCTTGTACtaaaataaacaattctaaCCGTTGTGCgtta
gttttttatttcttaaaatcttgtactaaaaaattctaaaataatttttc
aacaaatacaaatgaaaataatttaacgaaaatcaacaaaaattttaGGG
TACCTTCTTTTGATCATTTGGTCGGTTATCCAAACCAAAATGACACATTC
ATGTCaatattttcactttcaatTCTAAGTGCCTGAAGTGACATATCACG
ATGGAGTACTGAGCGGTTGCCAACCGACAAAAGACATTTTCGATTGGTTC
TCTCAAGCATTACCAATGGTCTCAAAGTTGGTCATTTTCTCATGAGGGTT
TAATTTAAAGTTTACTTTTCTTGACTgtcaataaaattcaaaaactttga
aatttgagTAGAATAGAATTCTAAAATATGTCTTTTCATTAGAAcaaagt
ttataagaacatttttggctcaaatctggaaaaaaataagaattattTTC
GCAATCACAAGTCTTTTAATTTCCAACTCTAAATTAGAGCAGATTTGTAC
GACTTGAGAACCAAAAGTAATTTTGTATGAGCGAGTTTAATTTCTAGATG
ATAATAAACGCCGATAAGCATATtgtccaaaaaataaaaagcacatccag
gctcagccataATTACAaagttctaataaaaaacgtgtagcctaCCGAag
ggatttttatttttaaaagggTACAGAGTAGCAGGCATATAACTCTTAAG
TAAACCACAGATTCTTAAGATCATTAATAAATCGCATCAACACACAGGAA
GTGAGTTATAGATTAAATCCCCCAAATACCTAAAGCTGTTATTGTAATAT
AATCATCATGATACTGAAAGATGGGCAACCCAAGTTATCAATCGAAGCTC
TCCAAATTAAGCTGTTTGTTTTAGTATATAATCAAAGGTTTACCGCATTT
AAGGGGAAACTCAAGCCATTTCAAAATGGTGCTGTGAACTGTTAACACAG
TGAACAAACGATACGAAAAGGTGGGTGGAATGTCAATAAATATAAAGGGC
ACTTATCAAGTACTAGGTTTTGGTATaccataaaatatttcatacaTAGA
GAATAAACAATGAAAGAAATTAACCAAAGAACTACAACTTTTAGGGGTAG
ACGTTTAAAACCATATAGATGGGAGAGACAccacaaaaatattgaaatta
tctactttctttgatttcaaaattttaccatTGCGAGCttaataagaaaa
atatttcgagaGCATCATTTTTTGCCACCGCAGGGTCGTTTCAATTAAAT
TCGAATGTGTTTGGGTTTGGCTATAGTAGGANCTGGAGAGCATCATTTTT
TGCCACCACAAAGTGTTTAATTGAAACTTAATGTGTTTGGCTGGTAGGAA
GAAGAAGGAATCTTAAAGACAAGAATGACTTGATACCATAAAGATTCGAA
TCATTTTTGAAACTTGCCGTATACTTTTTTTGATGTGGTCAAAGCGAACA
AGTTTTGACTAAGTATGTTATAAGAGGACCCGAGAGATTAAAGATACCCT
CTAAATATCATCaaccaaaaattgtttttcttgatAAGTAGCCGATTGCT
TTCTGACCACAATAAGCCGATGCTACACTATTAAAATATTTCTCACGTTA
AAAAATTGTCTAGTTTGcatttatttaaatttaaattttaattaaaagta
CATTACTTTTAAGAAACCATAATCAGTCTCAAAGGTTTTCATAACTTGAG
TCGAGTAGGTCACCGATTTGCTATAAACCATAAAAATAATATGAGAGAAC
TTTTGAAATATCTTGAAATGTTTCCGCTGcggggaaattttgaaaggcAT
TGCGTAGATATAGACGTGACCTTTAGTTGGCAGTATTTCCAATATGATAA
CAGGTATTGTGAAGTGTATGCACACACTTGTGGTTGTACTTTCATGTATG
ATTCACGCTTCTCTGAAAATTCTCAAGTATGAGAGGACATGCTGAAATGA
CTGAGGCTTTTTAGCGGAAAAATCTTTTACCCCTTAGGCATGCACTTTTT
TCTGCAATTTCATATTTAGGTAAGGCTCAAAACTCACAAATAACTTAAAC
AGAGGAAGAATCTCAAAAATAAGCCCCAGCTTTAATGGTcgaaaatatca
tttttgttCAACAGTGACCAAGATCAGTGAAAAGATAGCCAAACTTTATA
CTAAGAGCACAATAATCTAGGACGTTTACAGCATCTTTTGATTATTGCAC
GAGTCAACCGCATTTTCACCGTGACAAGGATATCTTTTCGGTAGAAAATA
CGCATAATGCAAGGGTAGCTGtgtttttttaaccaaaaggaaagaaaaat
cacTCATTAATTTCTCATCTACTGTGTGTTTGGATCAACCATGATTATTT
TTTACATCAAGTGGATTTAGAAACTCCTCCTGTTTAACTAAGTAACTACA
ACACAAAACCAAAATAAATTGCGCTTTCAACTATGACGAGGCATTTATAC
TTAACACATAAAAAAGAATCTAAAACGGACAGGACCTAGATGGTATGAGG
AAAAAAAATCGGGaactttactttacttttttttcctGAGGAAAATAAGT
CTTGTACAGGGGTACTCACAATGATCTTACTTAACTTTAGAATCCCATAT
GGGAAATTTTCCTCATAGTATTCTTCTGAAAACAGAGGTCATCTGAATCT
CAGGGAGACGGTATTACAAGTATAGATGTCTCGAATTTAGAAGGGTCCAC
TTTCCTTTCACCTACGCTCGAAGGTTAAGAAATCGACTTTGTTTATTATA
AAATCAGATTAAATCAAGAGGTGCGAAGCTATATTCATTTATCGCCGAAA
ATCTATAAAACGAGGAAAGTATTTTTGCATGTCCGGCTCATGATATTATA
AAGCCTTCTTAAAGTCGTCTGATCGTTTTCCTGACTGTTTCAATTTAAGA
GcattaaagattttgtcaagcCAATctaaaaaaacagttttccaTTTGGA
TCGCGGTCACAGATATATGACATAATTTTGTGATTAGAATATTTTGAGGC
ACTTTATCTGAGCAAAGCTTTCTATTTGAAGTTTAATCTTAGTCTAATAA
AGGGATTTTCAGGATTGGAACAAGTACGAGGAAAAAAGTCGGTACCATTA
GCCAAGAGATAAGGATCACCGACTCCTTAACTAAAATCTACAAATACTCA
AAAAGAAGATTTATAGATTCCCATGAGattaaaagtcataaaaaaagtta
tgaaaacaaaacaaagaaaaaaatattacacgtTAATACATCAATCTCCA
CTAATATTGACCAATGGGaggggaaagaaaaaaaacggcAAACTAATTCA
CTACTACTATGTACAAACTCGTTGGGTATTTTGGTTTTTTGATTCAGTGA
GATTTAACAAGAAGGAAACCGAAAACTCAGTTTTCATGCGAGAACATGCT
CACAGAATACGCCCTCAATCGCAATACGTAATCATCAGTAGGAAGTTCAT
GATAGTTTTGACTCATGTATTTTTCCTATAGATTTAAAACTCTATGTATC
GATGCTGAATCAGCATCTTCACTGATCTGTTGTTAGGAGTCATCATTACC
ATAGGAAAATATTGAAAGAGGTCACCGTGACTTTTTTGGTGCATTAGAAG
GGAGACAATATGGACGACAAGGGTCCTATCCCAGGATAGTTGCACCTATC
AGACACCGTCGACCCTGTGTTTGCAATACAACAAAGCCATTGCGTATCTG
TGATTATACTCCAACAAGTGTTATTTATGCGAGCAGCGTCACCAGCAAGA
CACAATGTCCGCCTTACCTCCCTTTGGGTAATTCAGAGCGATTAGCGGCA
TTATAAGTCATTGCGAAAATTCGTAAATTTACGTAAGGCTGCTCCATCCG
CTATGCTTGATGACGAGTCTTGCAATACGTTGGTTTGAAATTAGGCGCGC
AAAATGAGGCCACCATGAGAAAGAAAGGAAGTTTTCGTTATTATTGATTT
AGCAGCCCAACGTGGCTATAGATATGAATGAAATCGGCCGTTACATTATG
CTAATGCAAACTATGTGGCTGTCTGAGCTGTCAAGGTTGAAATGAATGAA
CATTTTTCTCAATAAAGTCCCTATGTTACCCCCATTCAATTCAAAATGAC
ATAAAGTTTGTACACATTTTCAAATACAATAATTAAAAGTTTGAATTCCT
TTATTTAATTTTGCAGAGACATCAGCGAGCCGTGAAATTCAGGTTTTTGT
AAAGTACAAACGCTACCGGCTTGCTTGGCCGCTTTCCGgcagttttattt
atttatttacttcttAATTTCCTCTTTTCGTTTTCatttaaattaaaagt
tttcttatacATTGATACATTGACATTAAAAGATACAATAGCTCGGCGGT
GCTCCTCTACTTACTCAAacacaaaaacaattaaaatcggGTTAAAATTT
CCGTATAGCACGTTTAgtttaaaaagtgtcaattctaGCGTGAGAGAGCG
CAATCGGGTCCTGTTTTCCGACTTTTTTTTTGTCCGTGATTATTTTAGAG
GAAAAAGCTACTGATCTTGAACAAATAACGTATACTATAGTTCAAACAAT
GCATGGTCAAAAACAATACAtatgtgaaagaaaacaaacaaTGTTATTTA
TTTGAACAATGATCAACAACAAAACGACAAACTCAACTATTGTCTTACAT
TTATAAAGTACACAAATCGATCAATCGTAAATCATATAACACTGCCAACC
ACTTAGATTCATATTTTACAATGTCATGGATGCTTAATAGCACTGGTTTA
GGGCAGCAGGGTCTAAAGCAATTTTGAACTATTAGTTATTTTTTTAGCCT
CTTGACAATCTGACATTTTTAAAAGGGGGAAGCCTTAGTTGTCATTACTT
GCGGTTTAGGAAAGCATTGGTGACATCTGTAGGAAAGAAACTTTATTTTA
CTATATTGCATCCTCTTATGTTATTTGAAGGAGACATTCTGTTGTCAGGT
TCATTTATGGGATATTCTTTGATTTTAAAAGTCTGCAATAGCACTAGGGT
TGAATCGCGTCTTTAATTTTTGTGGATATTCATTTAGTTAGATTGACTTT
TGATACAACTCAAGTCAAgttaacttttaaatttttaaaaactacttGGA
ACTGCTTAGTGGCTTTTATATGAAAGTTCCGAAGGTCTGCAAACAGCTTT
AGGTTTTTTTGTTCGTTACACTTTGGTTTAAAAATTGTTACGTTTTTTTA
CTGATACCGAGGCTACTCAAGCCAATTTGGGATACAAATCTAGACACCTT
ATGCCAAAGTCTTTGGAGATTGATTAGAATTAGAGGCTGTGGAAATTTAG
GAATGGGTCATTATCTTGCTAAAGTTAGATTCAGGTTTGACTGATACCTT
TtatggtacacgtttttttttactaGAACCCAGTttgtaagaacatttag
gctgaaatttggcaaaaatttaagaacattataagaacaTGTCCAGCCTG
AGAATCGAATAGTTTGACGAAATTCGCTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNaaaaatttaagaacattataagaacaTGTCCAGCCTGAGAATC
GAATAGTTTGACGAAATTCGCTTACAAATCTTTAGAGTTCGTAAGGAAAT
TTTTGCAATTATTACTGTAACTATTCCTCTCATCTAAAAATAATAGCAAA
TTTACTCGATTTTTAACCCAATATCGACATTCAAAGGTTTTATTAGATTT
TAAGCGAATCGATCTCAAGAACGtcaataagaacatttcaaactgaaaat
tgatgagaaaataGGTACATCCAGCCTCAGCTAACTAAAACTAAgacgtt
ctaataaaaaaaaaacgtgtagtttaaTGATTAttgggtaaaaaaaaatt
atgattttaaattttcttttaacaGACAACAAACTAACAACGAAGATAAC
CAACAAAGATTATACGTAATAACCAGTGACATCACACCTTCCAAAGCAAc
gattttggaaaaacacaTAATATATTCAGACGTTCACACCTTTtcaaagt
agttttaataacaATCTTCCACCATTTCACACCCAGCGGCACCACCACCA
CAAGAAGATATGGCTTGGCCTTCACCTTACAACGGTATACCATCGTATTC
ACCAATGCCGCCCAACTGCATTGGATTTCCATACCACCCTAGTGGCGTTA
ACGTTCATTATCCACTAGCTCCTAGTTGTGGAGGTAAgcaatcttttttg
aaaaacctCGTGCATTTTGTTGGTATATCAGAAATGAAACATGTTTTTAA
AGCTTGCTGGTTTCTAAACCATGATTCTTTGGTTTCACAATGCTTTAATT
TAAGAACgataattttagtttaaattttaagGGTTTAAATTATAggtcaa
aattcaaattatgAAAATCGCCATACATATATTAGCTAGGGAGCCTTCAA
AGGTTTAGACTTTCATTTAGATTCAAATTTAGCTGATTTAAAATCACGAT
AAAACTTTTGGGAAACACATTTGAAGGTTGGAAAAGTCTGCAAGAGCTGA
CTGCTCAtagattaaaaaataatatttgaaaattatatcCAATTTCTCAG
CTCAGTAACACAGGGTGTGCTTTAGTTTGAAACCTGACGAAAATTGCTTC
AATAAGTTCTCCAAATCTCTTGAAGCTCTGAGAAATGACAGTTTGACAAG
ACATACTTCAAACTTGCAGAACATTGTTATCGACATTTTTTGGGATGGGG
ATACTTAAGTGATCGACAGTGAAAGACTTCAGATGTGAAAGCAAACAAGA
GCTTCGAATACCTTAAAATACTATCTATTACTAACTGACATGCACAATAA
TTTACAGTGATATGAACTGTGACAATTTAAACAGGCATTCAAAACATTCA
CATACAGATTTTCCTCATTTTGGCCTATACTAAATATGCTTTAATTTAAG
TGGTTTTGATCGAGTCTTTCGGGGTCAGCAACAAGCTTCTTTTATAGTAC
GTGTAAATCAATTGTCTGAATCAAgacatttttaaagaaattttaagaga
tcttcttgaaatttcaaattaatgtGCATTTCGAGAAAAATTGAATAGTA
AAAaacaaaggcttcaaaatttgatgctttgtaaatggcttaaaatctta
caaaagacCAGTTTACAAAATATCATAGCCAGAAGCtaaaaaaataaagt
tgatCAATGGAGAAATGGGAGGGAAAGCAAAACGAGACACCTAAGAATCT
ATTTCCTCCAGTTTGGAAGTCAATGTGGAAGTGAATAAAAACCAAATCCT
GTTTTCTGGCTACAAAGTTGGCTAAAAAATAACAAAGCTTCAAGTGTCAA
CTATATGTCCAACCATTTTGATAAGATTTTCCATCCCTTTATACACATCA
CTTGATAAATTTACAGGAAATTTCGAGAAGTGTCAAATTATGAGCTTTGC
CAAAGAAGTTTCTCTATCAATCACGATACTTTCGAGTTGCCCACAAACTT
TCAAAAATTTATCTTAACCCTTAGATTTACTTTGTCAGGAATATTAATTC
TCGATGTAAGAATAAGACAGCAGACAGAATTGTCAATAAAGTTTCCAATA
AATTGTCACTGTTTATAAAGTTATTTTCCTTTGGGAGGGTTTAGGCTGAT
TTTCCGGCCGATAGAACACCCCCTTCTCATAGACCCGGTAGGATTTTTTT
AGCCAGTGGGGGTAAATATATTTAACAGACCAAAACCTGATGGGGATTGA
TATTCCCATGTATTTTATGGCTGGGGGTGTGAATTCCATTGTTTTCGAGT
AAGAAAATTCAGAGGGGATGGAAAAAATAGCATTATAAATTGCAGAGGAT
TTACTTAAATGAATATTTTAAGCGGGAACAAAAATGAAATTTTGCACTAG
GGACGATTTTTTGGCCAATATTTCAATGGGAAGGGGTTGCAGTGGGTTTG
TGAGAAGGGGATGTGATAAAAGTATATTATCGGGGTTGTATCCTTCGTAA
TGTTAATTTGGGTGTAAAGCAAGAAGCAAAAATAATTTCTAAATTATAAC
ACAACCCAATTTTTTTTTTAGTGTTCCCAAGAAAGCAGCGACGGGAGCGG
ACCACTTTTACAAAATCTCAACTGGAAATATTGGAAGACCTATTCGCTAA
GACTCATTATCCAGACATATTTATGCGAGAAGAGGCTGCAAGGAAAATCA
ATCTTCCAGAATCTAGAGTTCAAGTAAGCCTTAGAATTACGTAATTCTAA
AAAACACAAATCTTTTAAATAGGGCAGTTGGATTCCAACTTTTGTCCTTC
GTAGTGGAGGCTAGAAATTCAAACATTTCACTTTCGGGGAAAGAACAGAC
TCGGTTAGGTTGCTAATCTCTGAAAAGAAAGGTACGGAGCTATTTGCGAG
AGTCGAAATGACGCGGAACAAACAGCTACCTTGCATAAACTTCCCGCGTC
CgtgtttgaaaacaaaacatagGGCAATAATAAGGGATATTTTACTACGG
ACTCTTTGAATGCTAAAGTTTTTATCAATGATTTTAGTATAGTTTCAtta
acaaaatatttgtttatgtttcggTAAAATGTCACTCTTTAATTTAATTC
GTGAGCAAATCTTTCACATAAAAAGCGGTCTCGATTTCCTGGTCTTTGTC
TAATAATCGAGTCTGGCTGCATACGTCTGATAAGCAATGGACAAATTAAA
GCAAACAAGAGGAAACACGAGGAAAAGGGTTCACAGTGACATACCTTTTG
ACGAACGGAATATACACTTTGGCCCAATTTTCGAGCCCATATTGTTTGAA
ACTTTTGGTGATTCATTGTTTTAAAATCCTTTTATGGTCTTTTGTAATAC
CACGCGTCTTAGAGCTTGGAACTGGGCATCCTAGTACTTGGCAGTATAGG
TCAAAactaaacattttcatttttttcccaaaacaGGTCTGGTTCAAAAA
TCGTCGAGCAAAACACAGACAGAAGGCTAAACAAGACAAAGAGAAAACCT
CGAAAAAGACTTCAAACTCAACTTCAAGCGACACCAGCGAACTCAGTAAG
ACAGGATCAATATCACCAGCACCATCAATCAGTCCAAAAGTCAGTAACAT
TGTCGCCTCACCACCAGAGAGCCCGAGCTACAAAACAACGATATCGACCC
CATCATCCAACATGAACTCCATCTGGAGTCCTGCTAAAAACCCATCACCA
TACGAAGCACCACGTACCGTATCTCCTATCCTCAGCCCCTGTGCAGGAGG
AGGGGGTAGCAACCCTGGTAGTGGGGGTGGTTCCTCCTATAACCAAAGCA
GCTCCTCTCTATACACTCATACACCTTACAATATGTCACATACGAGGAAC
GACTACCCTCAGTATGGTACCATGCCCTTTTCAACGTCGGTAGGAGGGCA
TAGTAATCATAACTCGAGTGATATAATGGACTTCCCAAACGAATATCATC
CTCAACAGAGTGCTCCTTGGTATTCCAGCATGTAAAAGTCTAGAATGTAT
AGGTAGAAGTAAACTGGTGTAAAGATTAATAAACGAAATATTGTTTTTTA
AAGAGACCTTTGTATATAGTGTTTAGGAacagtcaatttttttatttttt
tttttaaatgtagatttttcaagttatcATATTCGAGTTTACCAACTCTA
GATTAACTCGGTGACTATCAAAATAGGTTTTTGAGTCTTTCTATGTTGCG
TGAAGATCTGGTTCTTAATGTGGAGAAGTTTTAGAATGTTTTCAATGGAA
TGGTTACAAAGTTTTATCAAAGCTTTTATTGAACTTCTGATGAGTAGAGC
TTATGATTCAAAACTTATAATCACAATGTctcattttcacaaattttcaa
aaacattgttTCCAGGCTAATCTAGCTTTAAACCAGCGTCGTGTATGTTA
GATGGAGGTTGTTTTGGCGTTTCTTGTGAAAAAAATGCCTTTTATTTGGT
ACTGGTGTCGAATTTAAGGCTTACGAATTTTAGAGTTtcttttcatgtta
tttttgaaaacataaaatgtatattttctagattaaaaaaattacgcaaa
gatatattttttgatatattttgctCATTATTTAAAcatcttttaatttt
tgttatatTAACTATTTCTTTATAAATAAGTATTTACAGTATTATAAATC
GAGTTAAAAAAGTCACATTAAAATCTGTAATTCTAATTGTCAGTTTTTAA
ACCCATCAAAAATTGAACacacagttgatgctctctaattcgattttcaa
ggggaatagaatttttgtcgaataagggagcgcaTTGAAT Coding sequence (CDS) from alignment at scaffold_415:236471..250360+ >TCONS_00064435 ID=TCONS_00064435|Name=TCONS_00064435|organism=Clytia hemisphaerica|type=CDS|length=2475bp|location=Sequence derived from alignment at scaffold_415:236471..250360+ (Clytia hemisphaerica)
ATGGCTTGGCCTTCACCTTACAACGGTATACCATCGTATTCACCAATGCC
GCCCAACTGCATTGGATTTCCATACCACCCTAGTGGCGTTAACGTTCATT
ATCCACTAGCTCCTAGTTGTGGAGTGTTCCCAAGAAAGCAGCGACGGGAG
CGGACCACTTTTACAAAATCTCAACTGGAAATATTGGAAGACCTATTCGC
TAAGACTCATTATCCAGACATATTTATGCGAGAAGAGGCTGCAAGGAAAA
TCAATCTTCCAGAATCTAGAGTTCAAGTCTGGTTCAAAAATCGTCGAGCA
AAACACAGACAGAAGGCTAAACAAGACAAAGAGAAAACCTCGAAAAAGAC
TTCAAACTCAACTTCAAGCGACACCAGCGAACTCAGTAAGACAGGATCAA
TATCACCAGCACCATCAATCAGTCCAAAAGTCAGTAACATTGTCGCCTCA
CCACCAGAGAGCCCGAGCTACAAAACAACGATATCGACCCCATCATCCAA
CATGAACTCCATCTGGAGTCCTGCTAAAAACCCATCACCATACGAAGCAC
CACGTACCGTATCTCCTATCCTCAGCCCCTGTGCAGGAGGAGGGGGTAGC
AACCCTGGTAGTGGGGGTGGTTCCTCCTATAACCAAAGCAGCTCCTCTCT
ATACACTCATACACCTTACAATATGTCACATACGAGGAACGACTACCCTC
AGTATGGTACCATGCCCTTTTCAACGTCGGTAGGAGGGCATAGTAATCAT
AACTCGAGTGATATAATGGACTTCCCAAACGAATATCATCCTCAACAGAG
TGCTCCTTGGTATTCCAGCATGTAAATGGCTTGGCCTTCACCTTACAACG
GTATACCATCGTATTCACCAATGCCGCCCAACTGCATTGGATTTCCATAC
CACCCTAGTGGCGTTAACGTTCATTATCCACTAGCTCCTAGTTGTGGAGT
GTTCCCAAGAAAGCAGCGACGGGAGCGGACCACTTTTACAAAATCTCAAC
TGGAAATATTGGAAGACCTATTCGCTAAGACTCATTATCCAGACATATTT
ATGCGAGAAGAGGCTGCAAGGAAAATCAATCTTCCAGAATCTAGAGTTCA
AGTCTGGTTCAAAAATCGTCGAGCAAAACACAGACAGAAGGCTAAACAAG
ACAAAGAGAAAACCTCGAAAAAGACTTCAAACTCAACTTCAAGCGACACC
AGCGAACTCAGTAAGACAGGATCAATATCACCAGCACCATCAATCAGTCC
AAAAGTCAGTAACATTGTCGCCTCACCACCAGAGAGCCCGAGCTACAAAA
CAACGATATCGACCCCATCATCCAACATGAACTCCATCTGGAGTCCTGCT
AAAAACCCATCACCATACGAAGCACCACGTACCGTATCTCCTATCCTCAG
CCCCTGTGCAGGAGGAGGGGGTAGCAACCCTGGTAGTGGGGGTGGTTCCT
CCTATAACCAAAGCAGCTCCTCTCTATACACTCATACACCTTACAATATG
TCACATACGAGGAACGACTACCCTCAGTATGGTACCATGCCCTTTTCAAC
GTCGGTAGGAGGGCATAGTAATCATAACTCGAGTGATATAATGGACTTCC
CAAACGAATATCATCCTCAACAGAGTGCTCCTTGGTATTCCAGCATGTAA
ATGGCTTGGCCTTCACCTTACAACGGTATACCATCGTATTCACCAATGCC
GCCCAACTGCATTGGATTTCCATACCACCCTAGTGGCGTTAACGTTCATT
ATCCACTAGCTCCTAGTTGTGGAGTGTTCCCAAGAAAGCAGCGACGGGAG
CGGACCACTTTTACAAAATCTCAACTGGAAATATTGGAAGACCTATTCGC
TAAGACTCATTATCCAGACATATTTATGCGAGAAGAGGCTGCAAGGAAAA
TCAATCTTCCAGAATCTAGAGTTCAAGTCTGGTTCAAAAATCGTCGAGCA
AAACACAGACAGAAGGCTAAACAAGACAAAGAGAAAACCTCGAAAAAGAC
TTCAAACTCAACTTCAAGCGACACCAGCGAACTCAGTAAGACAGGATCAA
TATCACCAGCACCATCAATCAGTCCAAAAGTCAGTAACATTGTCGCCTCA
CCACCAGAGAGCCCGAGCTACAAAACAACGATATCGACCCCATCATCCAA
CATGAACTCCATCTGGAGTCCTGCTAAAAACCCATCACCATACGAAGCAC
CACGTACCGTATCTCCTATCCTCAGCCCCTGTGCAGGAGGAGGGGGTAGC
AACCCTGGTAGTGGGGGTGGTTCCTCCTATAACCAAAGCAGCTCCTCTCT
ATACACTCATACACCTTACAATATGTCACATACGAGGAACGACTACCCTC
AGTATGGTACCATGCCCTTTTCAACGTCGGTAGGAGGGCATAGTAATCAT
AACTCGAGTGATATAATGGACTTCCCAAACGAATATCATCCTCAACAGAG
TGCTCCTTGGTATTCCAGCATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064435-exon-scaffold_415-1491911889:236471..236559 | TCONS_00064435-exon-scaffold_415-1491911889:236471..236559 | Clytia hemisphaerica | exon |
| TCONS_00064435-exon-scaffold_415-1510915933:236471..236559 | TCONS_00064435-exon-scaffold_415-1510915933:236471..236559 | Clytia hemisphaerica | exon |
| TCONS_00064435-exon-scaffold_415-1575043694:236471..236559 | TCONS_00064435-exon-scaffold_415-1575043694:236471..236559 | Clytia hemisphaerica | exon |
| TCONS_00064435-exon-scaffold_415-1491911889:245996..246303 | TCONS_00064435-exon-scaffold_415-1491911889:245996..246303 | Clytia hemisphaerica | exon |
| TCONS_00064435-exon-scaffold_415-1510915933:245996..246303 | TCONS_00064435-exon-scaffold_415-1510915933:245996..246303 | Clytia hemisphaerica | exon |
| TCONS_00064435-exon-scaffold_415-1575043694:245996..246303 | TCONS_00064435-exon-scaffold_415-1575043694:245996..246303 | Clytia hemisphaerica | exon |
| TCONS_00064435-exon-scaffold_415-1491911889:248142..248293 | TCONS_00064435-exon-scaffold_415-1491911889:248142..248293 | Clytia hemisphaerica | exon |
| TCONS_00064435-exon-scaffold_415-1510915933:248142..248293 | TCONS_00064435-exon-scaffold_415-1510915933:248142..248293 | Clytia hemisphaerica | exon |
| TCONS_00064435-exon-scaffold_415-1575043694:248142..248293 | TCONS_00064435-exon-scaffold_415-1575043694:248142..248293 | Clytia hemisphaerica | exon |
| TCONS_00064435-exon-scaffold_415-1491911889:249007..250360 | TCONS_00064435-exon-scaffold_415-1491911889:249007..250360 | Clytia hemisphaerica | exon |
| TCONS_00064435-exon-scaffold_415-1510915933:249007..250360 | TCONS_00064435-exon-scaffold_415-1510915933:249007..250360 | Clytia hemisphaerica | exon |
| TCONS_00064435-exon-scaffold_415-1575043694:249007..250360 | TCONS_00064435-exon-scaffold_415-1575043694:249007..250360 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_415 | supercontig | scaffold_415:236471..250360 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
BLAST of TCONS_00064435 vs. Swiss-Prot (Human)
Match: OTX2 (Homeobox protein OTX2 OS=Homo sapiens GN=OTX2 PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 5.732e-30 Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = 1
Query: 307 SYSPMPPNCI-GFPYHPSGVNVHYPLAPSCG--VFPRKQRRERTTFTKSQLEILEDLFAKTHYPDIFMREEAARKINLPESRVQVWFKNRRAKHR 582
SY PP + G SG+++ L PS G PRKQRRERTTFT++QL++LE LFAKT YPDIFMREE A KINLPESRVQVWFKNRRAK R
Sbjct: 3 SYLKQPPYAVNGLSLTTSGMDL---LHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 94
The following BLAST results are available for this feature:
|
