Otx-related-2 (polypeptide) - C. hemisphaerica

Overview
NameOtx-related-2
Unique NameTCONS_00064435-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length274

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064435-protein ID=TCONS_00064435-protein|Name=Otx-related-2|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MAWPSPYNGIPSYSPMPPNCIGFPYHPSGVNVHYPLAPSCGVFPRKQRRE
RTTFTKSQLEILEDLFAKTHYPDIFMREEAARKINLPESRVQVWFKNRRA
KHRQKAKQDKEKTSKKTSNSTSSDTSELSKTGSISPAPSISPKVSNIVAS
PPESPSYKTTISTPSSNMNSIWSPAKNPSPYEAPRTVSPILSPCAGGGGS
NPGSGGGSSYNQSSSSLYTHTPYNMSHTRNDYPQYGTMPFSTSVGGHSNH
NSSDIMDFPNEYHPQQSAPWYSSM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040405XLOC_040405Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064435TCONS_00064435Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 271..274
NoneNo IPR availableGENE3D1.10.10.60coord: 41..117
e-value: 4.9E-30
score: 102.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..230
NoneNo IPR availableCDDcd00086homeodomaincoord: 48..105
e-value: 8.35185E-24
score: 90.7656
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 47..109
e-value: 3.7E-23
score: 92.9
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 48..104
e-value: 4.2E-22
score: 77.6
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 45..105
score: 19.678
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 28..106

Blast
[Close]
BLAST of Otx-related-2 vs. Swiss-Prot (Human)
Match: OTX2 (Homeobox protein OTX2 OS=Homo sapiens GN=OTX2 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.647e-33
Identity = 88/186 (47.31%), Postives = 106/186 (56.99%), Query Frame = 0 
Query:   12 SYSPMPPNCI-GFPYHPSGVNVHYPLAPSCG--VFPRKQRRERTTFTKSQLEILEDLFAKTHYPDIFMREEAARKINLPESRVQVWFKNRRAKHR------QKAKQDKEKTSKKTSNSTSSDTSELSKTGSISPAPSISPKVSNIVASPPESPSYKTTISTPSSNMNSIWSPAKNPSPYEAPRTVS 188
            SY   PP  + G     SG+++   L PS G    PRKQRRERTTFT++QL++LE LFAKT YPDIFMREE A KINLPESRVQVWFKNRRAK R      Q   Q+K + +KK ++     +SE   +G                 +PP S S  T  S  SS   SIWSPA + SP   P + S
Sbjct:    3 SYLKQPPYAVNGLSLTTSGMDL---LHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKTSPAREVSSESGTSGQF---------------TPPSSTSVPTIAS--SSAPVSIWSPA-SISPLSDPLSTS 167
The following BLAST results are available for this feature:
BLAST of Otx-related-2 vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTX21.647e-3347.31Homeobox protein OTX2 OS=Homo sapiens GN=OTX2 PE=1... [more]
back to top