TCONS_00064417 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064417
Unique NameTCONS_00064417
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1821

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064417 ID=TCONS_00064417|Name=TCONS_00064417|organism=Clytia hemisphaerica|type=transcript|length=1821bp
GCAAGAGTCCATAATAAAGATGATGCAATCAGAGACATTTACGATGGAAA
GTTCTACAAGAAACTTGTCAATGAGGGATATTTCGAAAATGATGGAATAA
ACTTAACCTGTCAACTTAACAGTGATGGTGTCAGTCTTTTTAAAAGCAGC
ACATATTCTGTTTGGCCAGTGTATCTCCGTATAAATGAGCTACCGCCCTA
TATGAGAAATTGTAAGGAATTCAAACTCCTCCCATGCCTCTGGTTTGGAA
AGCAGAAACCGTATATGAGAACCTTTTTAAGACCTTTGGTAGATGCAATG
AAGACGTTATTTCATTCAGGTATCATCATAAGGTTTGCTGATGGTACTAA
AGTGAATGTGagaatggtcatttctggaggGCTTTTTGATCTTCCTGCTA
AATGTCTTGCGCAAGAAATGGTGCAGTTCAATGGTTATTTTGGTTGTAGT
TTTTGTGAGATAAAGGGTGAACAAGCAACATCAAATGGCAAGAAGAAAGG
GTCAAAAACTGTGTTTCCCTTGAATAAAGATTGCATACCAAAATTAAGAC
AAGAAGACAGAACAATAGTTCAAGCTATACTTGCTCTGGGACGAAATAAA
ACAattttcgggATAAAAGGATGTTCTATTTTGGCAGAGTTACCTTATTT
GAACATCATCTGGAACTTTCCATTCGATTACATGCATGGTGTGTTTTTGG
GTGTCTCAAAAACTTTAGCAAACCTGTGGTTTGATTCATCAAACTCAAAA
AATCCATGGTATCTTGGAGGGATGAGCAACATTGTTGAAAATCGACTCGT
TGCAATAAAACCACCCGATGAAATTACAAGACTTCCTAGAAGTATTATCA
ATCACCGTGGCTATTACAAAGCTAACGAGTATCGCAACTGGTTATTCTTC
TATGCACCTATTATCCTACAAGATGTTTTGCCAGAACCGTACTATAGATA
AAGCTGCTTGTAAATCCAATGTACATATATTACATTACCCAGAGCAGGTC
AGATGGAACGGACCTCTATGGGCCTCAATGTCAGGTTTCACGTACGAAAA
TTGGAATGGAGAGTTTAAATTCCTGTTTCACGGAACGCAAAACATAGATA
AACAGattatCTCATCAACCAATGTACGTCTGCGAATCCCTGAGATTGCA
TCATCGCTAGTCGAAGGGTCTCCAGAATATCAATATTATCACACACTTTC
ATTAACCAGAACTGAAGCAAAAGCTGCTAAGACATCCTATGGACCATTCA
AAACTCTTGATGCATTAGACCTAAAGTACATTGATAATACGAGTTTAATA
AGACAAGGGGACATGCTTACAAAGTATGATAAATATCAAAATCGCTTCAA
TACATTCAAGTCTGAAAGTTATACACGATCCACAAGGAGGGCCAATTTTG
CAGTAATGGTTGAATTCAATGGTCTTTTGATTCCTGCTATTATTAAGTTT
TTCATACAAGTAAATAGAGGGGAACGTAACCTTGCTGTCCTCAACGTTTT
AAAGTACTCTTCTAAAAGTTATGTGGGCAAGTAGAAGaatacaaattcaa
agttcAGCACATAAAATGCCTATTTAGATGAATGTATCGTTGTAGATGTT
AACTGCATTAAGAAAAAAcagatttccatttttttggaTAAACATATTTA
CTTTTCAGATTTTGTCAATAGATATGAGAGTGACTAGCTACCAGCCTAAT
ATGATTTTTGGGTAACCTAATCATGAGGATTTTTTATATTAATAGTATTG
TAAAGGATAAAATAATTAGTTTATATTATGTGAAGCTCTTGTTGTCGCGC
TCAGGTTTTCAAGATTGTAAT
Run BLAST on NCBI

transcript from alignment at scaffold_414:84801..89228+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064417 ID=TCONS_00064417|Name=TCONS_00064417|organism=Clytia hemisphaerica|type=transcript|length=4428bp|location=Sequence derived from alignment at scaffold_414:84801..89228+ (Clytia hemisphaerica)
GCAAGAGTCCATAATAAAGATGATGCAATCAGAGACATTTACGATGGAAA
GTTCTACAAGAAACTTGTCAATGAGGGATATTTCGAAAATGATGGAATAA
ACTTAACCTGTCAACTTAACAGTGATGGTGTCAGTCTTTTTAAAAGCAGC
ACATATTCTGTTTGGCCAGTGTATCTCCGTATAAATGAGCTACCGCCCTA
TATGAGgtatttttaaatctttttaattgactttgatttcaaagaaaTAT
GTAACAGAATTATTTACCatgttttattatttattatgtttacattttac
aataAGATCTTTGTAATATAAATACTGTACATCTCTTTAGAAATTGTAAG
GAATTCAAACTCCTCCCATGCCTCTGGTTTGGAAAGCAGAAACCGTATAT
GAGAACCTTTTTAAGACCTTTGGTAGATGCAATGAAGACGTTATTTCATT
CAGGTATGCTATATCTATATTTCGCCTCATTCAACTATTGTCAATCAAAA
AGGAGAACTTCTCAGCTCTTGATAAAtccattttcagtcattttgtgATT
CTCTCACATTGGATTAAAACATATTTGACTTATGGCTCTTATTTCAAGAA
TACTTAAACTTTTAGGTATCATCATAAGGTTTGCTGATGGTACTAAAGTG
AATGTGagaatggtcatttctggaggGCTTTTTGATCTTCCTGGTATGTG
ATATTATTAATATGATTGATATGTTGTTTTAGAAAATAGTAAACTATGAG
TTATTAATATTTTAAGACTTAGAACATGTTTAAACTTTTATAATCATACA
GGAAAATCTGATCGAGGCTCAATATGAAgcaaagtttcatttttaggCTA
AGCTAATGCTTATTTAAATGCTTTACTTCAAACTTTAGTTTAAGGGGGCT
CACAGTCACAAACAGCTTTATTATATAAAGTTCTAAAAAGAGTAAAAGTT
ATGTATACAGAAAAGCTACTCAATTTCATTCCATTTCAGCTTAGAGATAC
TGTATGCTAAGCATAGTCTCAGCATGCTTAAGTCATGCTCTATAAAAAGG
GAGAATTTGTCAAACTAacaagattcatgtaataattTCATGTTTAAATA
TTGTATAGCTTAGTTTTACAGGCTTTTATGgtgttaaaatttttgttgtt
gttccttTTAGCTAAATGTCTTGCGCAAGAAATGGTGCAGTTCAATGGTT
ATTTTGGTTGTAGTTTTTGTGAGATAAAGGGTGAACAAGCAACATCAAAT
GGCAAGAAGAAAGGGTCAAAAACTGTGTTTCCCTTGAATAAAGATTGCAT
ACCAAAATTAAGACAAGAAGACAGAACAATAGTTCAAGCTATACTTGCTC
TGGGACGAAATAAAACAGTAATTCTTCAACCTATTAATCCTAAGaagttc
atttgtttttctaaaaataatttttacaaaCACTAAATTTCGTAAATATT
TCATCTGTTACAAAACCTTTTAAATTCTtctcttttttaagattttcggg
ATAAAAGGATGTTCTATTTTGGCAGAGTTACCTTATTTGAACATCATCTG
GAACTTTCCATTCGATTACATGCATGGTGTGTTTTTGGGTGTCTCAAAGT
AAGTTGAATATATTATTATGACCTAACTTAAGGAAGACTTTTATCCAGCA
TTGCCTAATGATGAGTGAACACGATTGCTGACTTATATGCTGTAAAGGGT
AGACTAAAAGGTTTGCTCGCTAAGCTACACCAGATGTGagatatattttt
aaaagaaaatttgcgAAACTTATcagactgaaattccaaaattctttcaa
aattaattttcccCTATTTTTGAAATTCACAACAACAATATGTTTGATGT
TAccctttttttcttattctagAACTTTAGCAAACCTGTGGTTTGATTCA
TCAAACTCAAAAAATCCATGGTATCTTGGAGGGATGAGCAACATTGTTGA
AAATCGACTCGTTGCAATAAAACCACCCGATGAAATTACAAGACTTCCTA
GAAGTATTATCAATCACCGTGGCTATTACAAAGGTATGGGCACTTAATTT
CGGTACTTCTTGTTCTATTTTAATAtgtataattttttagaaatattatt
AAGAAAACATTACAATTTTAGCTAACGAGTATCGCAACTGGTTATTCTTC
TATGCACCTATTATCCTACAAGATGTTTTGCCAGAACCGTACTATAGGTA
TTTTGTtactcattcttttttttttcaattctgaGGGTTTTTGTTTAATC
TtaaaataattgaaacttaGAAATAGACCCGGTTTTcagattttcagaat
tttgCTCTATTTCATTCAAGCCATTTTCTTCTCCTATCAAACGCAATGTT
CATTTTACAAGAGGAGGAGTTGCCACCAACAAAAATTAGATGAGTCAGAA
AGGATGCTattcaaatttgttgaaagaatgGATAAAGTGTACGGGAAGTC
AGCAGATTATAATAGTTCTTGGGTAAAGTGACTTTTCACAAACTGTTTAT
TTTCATCTTATCTCCCTCTTAAATGTAACAACGATAATTACAATCATTCT
TAACCTAAGCTCGTGGCTTTTTTTCCATAGATAAAGCTGCTTGTAAATCC
AATGTACATATATTACATTACCCAGAGCAGGTCAGATGGAACGGACCTCT
ATGGGCCTCAATGTCAGGTTTCACGTACGAAAATTGGAATGGAGAGTTTA
AATTCCTGTTTCACGGAACGCAAAACATAGATAAACAGGTTATTAAATTT
TCTTGgtaattctttaaaagtaacATAAGTAAGTAAGAGTAAGATAATGA
GCTTAGTTTAttgtaaatttgtttgtttatgatattttcagattatCTCA
TCAACCAATGTACGTCTGCGAATCCCTGAGATTGCATCATCGCTAGTCGA
AGGGTCTCCAGAATATCAATATTATCACACACTTTCATTAACCAGGTAAT
TAAAGTGATCCTAATGGCAATGGTCTATTTTTTGATTTCACCAATTATCT
TGGATATACCTCATGCTTACATGGTTATCATACTCATAAAACTTTGATTT
TCACAAAATAACCACACTAGATTAAATTTCCACAAAGTCGATAATGTTGT
TTgcaaaatcataattttaaaatgAGGGATTTTCAGATTCTCATAATAAC
TAGATGTAGAACATCTAAAAAtcttatcaatttttttgtagaaacagttt
atcaaatatttcaactccaaacatccaaaatattttatgaatGTCTTTAG
TTTAAACTTGATTCAATTTTAGAACTGAAGCAAAAGCTGCTAAGACATCC
TATGGACCATTCAAAACTCTTGATGCATTAGACCTAAAGTACATTGATAA
TACGAGTTTAATAAGACAAGGGTATGTACATGTTTTATTGTAGGAATAAG
GTTTTTAGGTATAACGATGCTCGGCTTTTTAAGTGTTCAAATTCAAGTCA
GTCCAGAAAATATTTCTTGCAAGATTTGGACATACAATGTTCTAATGTTT
CACTCAATACTTTTGCATTTGATTCAGGGACATGCTTACAAAGTATGATA
AATATCAAAATCGCTTCAATACATTCAAGTCTGAAAGTTATACACGATCC
ACAAGGAGGGCCAATTTTGCAGTAATGGTTGAATTCAATGGTCTTTTGAT
TCCTGCTATTATTAAGTTTTTCATACAAGTAAGCAATTATGAACATTATC
CATTAACCACTATCTATTGTTAATATGTAATCTGTCACTAAAATTTCTTA
TTTCGTTTTTATATACTCCCAGTTTTATAAACTTTGTATTTTCTTTACCT
TCTATGATTTTTTAGTAGAAAATTCAACTTGAGTTCTAATAAAATTGCTT
TGCATTTTATTCTCTCTTTTTCAGGTAAATAGAGGGGAACGTAACCTTGC
TGTCCTCAACGTTTTAAAGTACTCTTCTAAAAGTTATGTGGGCAAGTAGA
AGaatacaaattcaaagttcAGCACATAAAATGCCTATTTAGGTAAGctt
ttcagtgaaatcttttggttttttctTTCAACTAATTTTATTCCGTATTT
TATAATGGTCTTGGTTTTGGTCTTTCAATCTTGCAATCTTTAAAacagat
ttatttttgaatgtGAATAATAACTAATTGAACAGCTGGACTGTTTGATA
TGACAATTGATTACTTCTTTCAATTTCAGAACAGATGAATGTATCGTTGT
AGATGTTAACTGCATTAAGAAAAAAcagatttccatttttttggaTAAAC
ATATTTACTTTTCAGATTTTGTCAATAGATATGAGAGTGACTAGCTACCA
GCCTAATATGATTTTTGGGTAACCTAATCATGAGGATTTTTTATATTAAT
AGTATTGTAAAGGATAAAATAATTAGTTTATATTATGTGAAGCTCTTGTT
GTCGCGCTCAGGTTTTCAAGATTGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040393XLOC_040393Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064417-exon-scaffold_414-1491911889:84801..85006TCONS_00064417-exon-scaffold_414-1491911889:84801..85006Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1510915933:84801..85006TCONS_00064417-exon-scaffold_414-1510915933:84801..85006Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1575043694:84801..85006TCONS_00064417-exon-scaffold_414-1575043694:84801..85006Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1491911889:85141..85253TCONS_00064417-exon-scaffold_414-1491911889:85141..85253Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1510915933:85141..85253TCONS_00064417-exon-scaffold_414-1510915933:85141..85253Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1575043694:85141..85253TCONS_00064417-exon-scaffold_414-1575043694:85141..85253Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1491911889:85416..85493TCONS_00064417-exon-scaffold_414-1491911889:85416..85493Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1510915933:85416..85493TCONS_00064417-exon-scaffold_414-1510915933:85416..85493Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1575043694:85416..85493TCONS_00064417-exon-scaffold_414-1575043694:85416..85493Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1491911889:85962..86167TCONS_00064417-exon-scaffold_414-1491911889:85962..86167Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1510915933:85962..86167TCONS_00064417-exon-scaffold_414-1510915933:85962..86167Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1575043694:85962..86167TCONS_00064417-exon-scaffold_414-1575043694:85962..86167Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1491911889:86292..86398TCONS_00064417-exon-scaffold_414-1491911889:86292..86398Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1510915933:86292..86398TCONS_00064417-exon-scaffold_414-1510915933:86292..86398Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1575043694:86292..86398TCONS_00064417-exon-scaffold_414-1575043694:86292..86398Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1491911889:86673..86833TCONS_00064417-exon-scaffold_414-1491911889:86673..86833Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1510915933:86673..86833TCONS_00064417-exon-scaffold_414-1510915933:86673..86833Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1575043694:86673..86833TCONS_00064417-exon-scaffold_414-1575043694:86673..86833Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1491911889:86922..86997TCONS_00064417-exon-scaffold_414-1491911889:86922..86997Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1510915933:86922..86997TCONS_00064417-exon-scaffold_414-1510915933:86922..86997Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1575043694:86922..86997TCONS_00064417-exon-scaffold_414-1575043694:86922..86997Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1491911889:87381..87538TCONS_00064417-exon-scaffold_414-1491911889:87381..87538Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1510915933:87381..87538TCONS_00064417-exon-scaffold_414-1510915933:87381..87538Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1575043694:87381..87538TCONS_00064417-exon-scaffold_414-1575043694:87381..87538Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1491911889:87642..87745TCONS_00064417-exon-scaffold_414-1491911889:87642..87745Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1510915933:87642..87745TCONS_00064417-exon-scaffold_414-1510915933:87642..87745Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1575043694:87642..87745TCONS_00064417-exon-scaffold_414-1575043694:87642..87745Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1491911889:88073..88171TCONS_00064417-exon-scaffold_414-1491911889:88073..88171Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1510915933:88073..88171TCONS_00064417-exon-scaffold_414-1510915933:88073..88171Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1575043694:88073..88171TCONS_00064417-exon-scaffold_414-1575043694:88073..88171Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1491911889:88328..88478TCONS_00064417-exon-scaffold_414-1491911889:88328..88478Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1510915933:88328..88478TCONS_00064417-exon-scaffold_414-1510915933:88328..88478Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1575043694:88328..88478TCONS_00064417-exon-scaffold_414-1575043694:88328..88478Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1491911889:88675..88792TCONS_00064417-exon-scaffold_414-1491911889:88675..88792Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1510915933:88675..88792TCONS_00064417-exon-scaffold_414-1510915933:88675..88792Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1575043694:88675..88792TCONS_00064417-exon-scaffold_414-1575043694:88675..88792Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1491911889:88985..89228TCONS_00064417-exon-scaffold_414-1491911889:88985..89228Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1510915933:88985..89228TCONS_00064417-exon-scaffold_414-1510915933:88985..89228Clytia hemisphaericaexon
TCONS_00064417-exon-scaffold_414-1575043694:88985..89228TCONS_00064417-exon-scaffold_414-1575043694:88985..89228Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_414supercontigscaffold_414:84801..89228 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.1266	0	0.405029	1.41791	4.89375	0.801014	0.930505	0.00130194	0	0	0.0330434	0.0234247	0	0	0.0212791	0	0.00483589	0.0229419	0	0	0	0	0	0.049776
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064417 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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