TCONS_00064412 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064412
Unique NameTCONS_00064412
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064412 ID=TCONS_00064412|Name=TCONS_00064412|organism=Clytia hemisphaerica|type=transcript|length=352bp
GTAATGGGTGACGTCAATGCTGTCCTGGCTCAAATGAGATCTTTCACACA
GGATGTGAGAAGTGGAACATGGAAAGGATATAGCGGAGAAGTGATCACAG
ACATTGTCAATATAGGGATTGGTGGCTCAGATCTGGGACCACTGATGGTG
ACTGAAGCTTTGAAACCTTTCGTGGACGGCCCTAAAGCTCACTTTGTCTC
AAACATCGATGGTACCCACATGGCAGAAACGCTAAAGAAATTGAAACCAG
AAAGCACTTTGTTTATTGTGGCTTCAAAGACTTTTACCACAGTTGAAACA
ATCACAAATGCTAAATCCGCTCATTCATGGCTTTTGGAAGCCGCTAAATC
TG
Run BLAST on NCBI

protein sequence of TCONS_00064412-protein

>TCONS_00064412-protein ID=TCONS_00064412-protein|Name=TCONS_00064412-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
VMGDVNAVLAQMRSFTQDVRSGTWKGYSGEVITDIVNIGIGGSDLGPLMV
TEALKPFVDGPKAHFVSNIDGTHMAETLKKLKPESTLFIVASKTFTTVET
ITNAKSAHSWLLEAAKS
Run BLAST on NCBI

transcript from alignment at scaffold_414:31703..37805+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064412 ID=TCONS_00064412|Name=TCONS_00064412|organism=Clytia hemisphaerica|type=transcript|length=6103bp|location=Sequence derived from alignment at scaffold_414:31703..37805+ (Clytia hemisphaerica)
GTAATGGGTGACGTCAATGCTGTCCTGGCTCAAATGAGATCTTTCACACA
GGTAAATATTCCTGCTccataaatttttatcatagaAATGACACATAGAG
ACAGGGACctctgacctttatatacccttgaccaagctatatctgccatc
tttgatctgGATGCGGGTTAATTtataattcaatgaaattttcctttatt
ttttttcccACATTTAGTAGTGCTACCATCAGGGTACCACTtgcaaaaaa
ctccgatcaaagattttggttggcCGGGATCGAAAAACAGTGTCCGGGGT
ATATAAAAGTCAGCGACaaggacccattttcaaagaTCTCAAACATTCCA
ACATTTTGGGTATTGGACACTTGAGTGTGTGACAGCAGAAAATCTTCAAA
CCAACTGATCATCCTTTTTATCTTCGTACattattatctccctaatattt
TAGGATGTGAGAAGTGGAACATGGAAAGGATATAGCGGAGAAGTGATCAC
AGACATTGTCAATATAGGGATTGGTGGCTCAGATCTGGTAcagcttttac
tttttttgtcttATTAATAAGCGTTTCTAAGCGTTTCTAAGCTTCAAGGG
AAGAAATTTGTCTTTAATCATTTTTGTAGGTCTTCCTATAAAACTTCTTG
TGAGATTAGAGCACTCCCACTTTCAAGGATGTAGAGTAaatggagaaatc
cagggagaaaaagtgacgccctcccctacctttactttaggtagatagct
atcgaaagagaagCCTTCGGGTCGATCCGGACTGCGgccgcagacttact
tacttactttgtGTTTTAGGGACCACTGATGGTGACTGAAGCTTTGAAAC
CTTTCGTGGACGGCCCTAAAGCTCACTTTGTCTCAAACATCGATGGTACC
CACATGGCAGAAACGCTAAAGAAATTGAAACCAGAAAGCACTTTGTTTAT
TGTGGCTTCAAAGGTTTGTGGTGTCAtgtagtttttggacctacctcgga
ggtgctttaaattaaccttcgttcgttcgttcgttcgttcgttcgttcgt
tcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttc
gttcgttcgttagttttttctgatttttggcacaaaggtgcaaaataatg
atgcccaaaatgtgacggagcccgattttcgagaaaaaaaaattccggcA
GAAATATGACTGAAAAACctgaactttctatttctatttttccttccctc
acccccatcaacaatcaatgatgaaatttaatgtgttgtgcatttttgct
aaaccctatattttctgactgattgttttcatttttctccttattgttat
ctaactttcatcatcaggtaggtccattcagcgtGTAGCTTGTTATATTA
TTGGCTATTATAGTGATCCATACAGTAtgccaaaataagaaaaatgagtT
AAAATTGCTTGTCGCATGGCCACTTtcagttttatttatttgattctttt
cCCTGCAAATTACATGAAATCAAAGCAAAAGCTACgcaaaaatctaattc
gaaatcCGTGTATTGTTTAAGGCAGTGCTGTGGGTCTAAATCTTAGTTTT
AAAATTCTCACCCtcaggccaaaccatggttggccctcgctgTGCCACTA
AACATCATATaatatcaaaatgcttcctacggcactgtgaAGATATCGTT
AATAAGACTTCCGATGGCTATATCTTGAGATGTTTTGGTTAGAAATTTGC
TGACTGATGCAAAAATGTTCCATAAATGTCAAACGATGAGTTTGAGATGA
TAATTTTCGAAATTCTTATCTTTGCATCGTTAAAAAGAAGTGGAGGATAT
AAAATGGATAAAGATAATAAAGAAAGTTATAATACAAACACTAATTAAAA
TCCCTTTAATAAGTCTCTCATTTTTTGTGTGGAATACTTCTGAAAACAAG
ATTCTTGATGAACGCGTCGGCTGCGTTGTGCCAGGGGTCTGAGCCCCACA
ATCTGACGTCATGGAAAACACGAGGTGTGTTGTTGATGATGGAGAACCGC
CGTATTCTGTTAATCAAGGTAATGTATCGATATCTCTTATAATCGGTCTC
GTAGATTTGGGCGATCTGAACGTTAGTGTATTTGTTGAACGGGACATGGT
TTGGTGTGTTGAAACAATAATTATGGTTATTGTTGATGGCGTGGCAGATA
TGGAGCTTCCGGGTGTTTGGGACGAACCAGATTGATGGAATACAGTAACC
AAATGTTCCGTGGCTCCCGCCGATAGTGGAGTGTAAAACGTTGGTCCAGT
GGTTCTTGATACTGCCCACGTGTTTGACGTCGAAAGACATATACCATTGC
TTCTCAATGCGCGGGATGAATCGAAGGAGCTTGCCTTTCGAAAGTTTGTA
ACCACCTGAAACGATGAGAAGAAATGGTTTTTTATATTAAGCGTCAAGGC
TTTTTTTGTTTGGAGCCCCTTGCCAAACATTCGATttattgacgtcactt
taaactttcaaatatcTTGCAGTAGAGAAAAATCAATTTGCATCAGAACA
CTTTAaggcttcttttttttcagaaaataatcaAAGTGTAACTCGAAGAT
TTTCTTACCTCCTGAGGTTGTTGTGACTTGAAGTTTACTGATGTCCGCTT
GAGCTGGTGAAAACCATGGATCGCCCCGGTAAACTCTAACATTGCGGAAA
GTTCTTGGGCTGGTGTTAACAACGTTCAGTTCTACTTTCTTATTAATGGT
GACTGTAAAGTAATTGGTGCAGCAGCCGACTACTTTCTGCTTGATATTAA
CTTCggtgaatttatttattagtaAATCCTTACTGGTCCAATGATAATTA
TTGTTGGCGCCGAGAGATGTTGCAATGAAAAGTTTATTTGAGTTTGGCCG
GAACCAGACCCCGGGGATTCGATCGCCATGAGATCCGTGATTCCTGCCTT
TGGTGACGTGAAGTATACTTTCCCACGTTTTGGCTTTTGCGTAGGGGCGG
ATACGAAAAGATACTTCGTACTCGGAAAAGTAGGTTGGAAATGTTTTGAT
GAGGGTGTTTTTTCGGATGGGATGATTGGCTAAAAGGGAAATTTAAGTTA
AGGTTAATATTTCTATCGAATATTTGTAATACATAGCATACCATTATCCA
ATTCATTCTGACCGTAGACAGCAGCCGTAACTGAAGCTTAGCAGCATTTG
ACTGCATCAAATCCAATTCCTATTCTGGTCTTACTAAGAGCTTTGGAAAG
TTCTACTAGATGTCTCTTTGCTATAATTTAACAGtcaaataaaagaattg
aaTGTGGCGCCTACTCGTACCCGCGACACCCTTAACCATAGaattataaa
gcccgaagggctagatgtcgtactttagctgaaaagtgtgtcgtggttag
gtaggaaatcctaactaggtcacgtgacattacaatataatttcagcgct
tgatcaatctgaagcttcgcgggttttcgaaaacaatagcaacaatagca
acaatattttttccgatattcaatttttttgcctgcgatggcttaaagta
cgacatctagcccttcgggctttataaatcaaTGTCCTTAACCTCCCCCA
AAGAAGAGTATCTATCCTTACTATATTGGCTATCACTGATGTAAAGACTT
CTGATGTTTGCTGGTGTGCTGCGTTGTACCATGGGTCTGCTTTGTACTTT
GTGCTTGTACTTGTTTAATGTTCTGGAAAAATTCCGGAGTCTTGTTCTCC
ACGTTTGATATTTGTTTGCCGTTCACCCAAACTCGATACATATATCTCGT
TGGAGTATTGCTGGGATATTGGCTAATCGAGACATACGAATATTTGTGAA
GAGGCAACGCAGCACTGTTGAAACACCAGTTGTTACTGTTATATAAACCA
GTACAAATATGAAGTTTTGAGGTATGTGGCTCGATAAAAACCGCTGGTAC
TCTACGGCCGTGAGCTCCAGAGTTCCCACCAGTTGTAAAATGTATGATAC
TGGTCCAATGGTTGACGATATAAAGTGGTTTGATTTGAAACGATATTGAA
TAAGCTGGTGACCAGGTCTCGAAAGCGTCGTGGATGAAATTTTTTCGAAG
TGTATAACCTACAAGGAAATAGGAGAATATCCTTTTGAACGTTTTTTTTT
CGCAAGTAAAACTATAAAAGGTATAAGTGCTTGAGCACGAGGAAACTGAT
TTTTCCTCAGAGCTCCGATAATCAGTATTTTTGCATACTGAGCTCTATTG
ATTAAGGCCggactccactttcgcgcgaaatgggcgacagttttttctta
accttttttgcctgaagaaaagattacgtcataaaaaagtttcgcgcgaa
caaaaaaaagttgaaggaagttctacttttttcatccgttacgtcaattt
ctaccaatggaattgcttcattttgtaaccgaccaatgaccttacaaaaa
catCTAAAAGTTTTCGcgcatgtcgcgcgaaagtggagaccggcctttat
gaCCAAACACCTATTAGCTCGCTGTAACTGTTTTCGACCCAGAAAAATAC
CGATAAGGCTCTCAACTCACCAACTTGTGGATCGTTGTGAGTAAGTTTTT
CATCTCTCTTCTTTTCGTCATTTTCCGGTTTCCTCTCCTTTTCGTCTTCC
TCTTCGTTCTCCACGATTtcgtcttcttttttcttttcttcgtttGGAGT
TGGAGCatcagctgaaatttaaagTGTTCGCTTTTATTTAACTGCAATTT
TTTCTTTCCACTACAGTATCACAGTTAACTCTCGTTAATTTGAACTCGAA
CAAGAAGTCTAATGGCTGAATAACAGAAAGActtgaattacagagagtat
tctACGAggtttagttcgaattatagaaagaatcGAATTATAGAAGCCTG
CTGTATAAAAACAAATCCTTTTAGGTTAGAAACGTAAAACCTCAATATTA
AATTGCCTTTGTATGTTTTATATGATTTTCCATACCTTTTTGAATCAGtt
catctttattttccttTGATTCTTCTGCCGGTTCGTCTTCTTCAGATTCT
TTTTCAACCACATCAATTCGTCCTCTTTCTTTTCATCTGGTTGGTCTTAG
TCTATATCCACCTCTTCTTTGTCATTGCTCAGCATAACATCTTCTTCTTC
GTCGCTTTCAATCAATTTCTCGTCTTTTGCAACATCTTCCCCAAACGCTC
TGGTTTGCCTAAAAGTGGAATTCAAATACTTTTCAAAATCATCTTAAGTT
TCTGTGATGGAATGTTTTAGGCAGTATGGGTTTTAGAAACGTTGTTGATA
ATGGTATGGTAATTAAAAAGGACACAGAGCAGATCATTTTGATTTGTATA
CagcaaattaaaaataaaactgataTTTAGGTTTATACTTACAATTTGCG
ATTGCAATGAAGCAAGCAGTGAGAAGAAAAATCTTGCAAAGGTTCATTCT
TCTTGTTGGCTTTTGTCTTCTTTATCTTTGGTTCAAGTCAAGAATGGAAA
TCCATATCGAACCCCCGCTATTTATACCCGTCAATTTCTTGTTCTCTTCA
ATTCATTTCGATCCATCCCCGATTAAAAAGTCATGAAAAGCTTTCGAAGG
GGTTTTGGCACCGCCTTTACACATGCTTATGCTTACGTTGTTTATTCGGT
AATTAAAAGGAGGTTTACGCAGAAATGTGGTTCaattaatctttttttat
tttatttatttattctttatttaaagtTGGGTAAAAACCTGctagaaaat
acaaaagtaaATTCTAATTAAGTCCAACTATcgtaaaaatattatttaaa
agctattaaaataaaatcctaagaaaaagaaaacgaaaaactatttacaa
tttttgcaTGTGCATTTTGAAAGTATATCGCTTTCGTTTAGAGCTTTAAG
AAAAGAGTCAAGATTTTCGTTTGATTTAACAGAAGATGGTAGTTTATTCC
AAGAAGATACAGCTGCTTgttgttattttatttttattttatttcctttc
atcatcaaatattattttttctttgtatagACTTTTACCACAGTTGAAAC
AATCACAAATGCTAAATCCGCTCATTCATGGCTTTTGGAAGCCGCTAAAT
CTG

Coding sequence (CDS) from alignment at scaffold_414:31703..37805+

>TCONS_00064412 ID=TCONS_00064412|Name=TCONS_00064412|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_414:31703..37805+ (Clytia hemisphaerica)
GTAATGGGTGACGTCAATGCTGTCCTGGCTCAAATGAGATCTTTCACACA
GGATGTGAGAAGTGGAACATGGAAAGGATATAGCGGAGAAGTGATCACAG
ACATTGTCAATATAGGGATTGGTGGCTCAGATCTGGGACCACTGATGGTG
ACTGAAGCTTTGAAACCTTTCGTGGACGGCCCTAAAGCTCACTTTGTCTC
AAACATCGATGGTACCCACATGGCAGAAACGCTAAAGAAATTGAAACCAG
AAAGCACTTTGTTTATTGTGGCTTCAAAGACTTTTACCACAGTTGAAACA
ATCACAAATGCTAAATCCGCTCATTCATGGCTTTTGGAAGCCGCTAAATC
TGTAATGGGTGACGTCAATGCTGTCCTGGCTCAAATGAGATCTTTCACAC
AGGATGTGAGAAGTGGAACATGGAAAGGATATAGCGGAGAAGTGATCACA
GACATTGTCAATATAGGGATTGGTGGCTCAGATCTGGGACCACTGATGGT
GACTGAAGCTTTGAAACCTTTCGTGGACGGCCCTAAAGCTCACTTTGTCT
CAAACATCGATGGTACCCACATGGCAGAAACGCTAAAGAAATTGAAACCA
GAAAGCACTTTGTTTATTGTGGCTTCAAAGACTTTTACCACAGTTGAAAC
AATCACAAATGCTAAATCCGCTCATTCATGGCTTTTGGAAGCCGCTAAAT
CTGTAATGGGTGACGTCAATGCTGTCCTGGCTCAAATGAGATCTTTCACA
CAGGATGTGAGAAGTGGAACATGGAAAGGATATAGCGGAGAAGTGATCAC
AGACATTGTCAATATAGGGATTGGTGGCTCAGATCTGGGACCACTGATGG
TGACTGAAGCTTTGAAACCTTTCGTGGACGGCCCTAAAGCTCACTTTGTC
TCAAACATCGATGGTACCCACATGGCAGAAACGCTAAAGAAATTGAAACC
AGAAAGCACTTTGTTTATTGTGGCTTCAAAGACTTTTACCACAGTTGAAA
CAATCACAAATGCTAAATCCGCTCATTCATGGCTTTTGGAAGCCGCTAAA
TCTGTAATGGGTGACGTCAATGCTGTCCTGGCTCAAATGAGATCTTTCAC
ACAGGATGTGAGAAGTGGAACATGGAAAGGATATAGCGGAGAAGTGATCA
CAGACATTGTCAATATAGGGATTGGTGGCTCAGATCTGGGACCACTGATG
GTGACTGAAGCTTTGAAACCTTTCGTGGACGGCCCTAAAGCTCACTTTGT
CTCAAACATCGATGGTACCCACATGGCAGAAACGCTAAAGAAATTGAAAC
CAGAAAGCACTTTGTTTATTGTGGCTTCAAAGACTTTTACCACAGTTGAA
ACAATCACAAATGCTAAATCCGCTCATTCATGGCTTTTGGAAGCCGCTAA
ATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040390XLOC_040390Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064412-exon-scaffold_414-1491911889:31703..31753TCONS_00064412-exon-scaffold_414-1491911889:31703..31753Clytia hemisphaericaexon
TCONS_00064412-exon-scaffold_414-1510915933:31703..31753TCONS_00064412-exon-scaffold_414-1510915933:31703..31753Clytia hemisphaericaexon
TCONS_00064412-exon-scaffold_414-1575043694:31703..31753TCONS_00064412-exon-scaffold_414-1575043694:31703..31753Clytia hemisphaericaexon
TCONS_00064412-exon-scaffold_414-1491911889:32156..32239TCONS_00064412-exon-scaffold_414-1491911889:32156..32239Clytia hemisphaericaexon
TCONS_00064412-exon-scaffold_414-1510915933:32156..32239TCONS_00064412-exon-scaffold_414-1510915933:32156..32239Clytia hemisphaericaexon
TCONS_00064412-exon-scaffold_414-1575043694:32156..32239TCONS_00064412-exon-scaffold_414-1575043694:32156..32239Clytia hemisphaericaexon
TCONS_00064412-exon-scaffold_414-1491911889:32522..32665TCONS_00064412-exon-scaffold_414-1491911889:32522..32665Clytia hemisphaericaexon
TCONS_00064412-exon-scaffold_414-1510915933:32522..32665TCONS_00064412-exon-scaffold_414-1510915933:32522..32665Clytia hemisphaericaexon
TCONS_00064412-exon-scaffold_414-1575043694:32522..32665TCONS_00064412-exon-scaffold_414-1575043694:32522..32665Clytia hemisphaericaexon
TCONS_00064412-exon-scaffold_414-1491911889:37733..37805TCONS_00064412-exon-scaffold_414-1491911889:37733..37805Clytia hemisphaericaexon
TCONS_00064412-exon-scaffold_414-1510915933:37733..37805TCONS_00064412-exon-scaffold_414-1510915933:37733..37805Clytia hemisphaericaexon
TCONS_00064412-exon-scaffold_414-1575043694:37733..37805TCONS_00064412-exon-scaffold_414-1575043694:37733..37805Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064412-proteinTCONS_00064412-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_414supercontigscaffold_414:31703..37805 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.4693	24.6693	17.7947	16.1496	27.2054	19.1682	30.305	32.1221	38.1431	51.5427	43.5727	33.9094	28.3363	29.5553	22.0462	21.303	39.6934	37.1393	30.7239	25.7037	20.5696	23.8187	14.7986	28.4079	70.0401	57.1512	12.263	12.6159	17.9457	20.2733
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001672G6P_Isomerase
Vocabulary: Biological Process
TermDefinition
GO:0006096glycolytic process
GO:0006094gluconeogenesis
Vocabulary: Molecular Function
TermDefinition
GO:0004347glucose-6-phosphate isomerase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006096 glycolytic process
molecular_function GO:0004347 glucose-6-phosphate isomerase activity
Blast
[Close]
BLAST of TCONS_00064412 vs. Swiss-Prot (Human)
Match: G6PI (Glucose-6-phosphate isomerase OS=Homo sapiens GN=GPI PE=1 SV=4)

HSP 1 Score: 171.014 bits (432), Expect = 8.160e-51
Identity = 81/117 (69.23%), Postives = 99/117 (84.62%), Query Frame = 1 
Query:    1 VMGDVNAVLAQMRSFTQDVRSGTWKGYSGEVITDIVNIGIGGSDLGPLMVTEALKPFVD-GPKAHFVSNIDGTHMAETLKKLKPESTLFIVASKTFTTVETITNAKSAHSWLLEAAK 348
            VM +VN VL +M+SF Q VRSG WKGY+G+ ITD++NIGIGGSDLGPLMVTEALKP+   GP+  +VSNIDGTH+A+TL +L PES+LFI+ASKTFTT ETITNA++A  W L+AAK
Sbjct:  118 VMPEVNKVLDKMKSFCQRVRSGDWKGYTGKTITDVINIGIGGSDLGPLMVTEALKPYSSGGPRVWYVSNIDGTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAK 234
The following BLAST results are available for this feature:
BLAST of TCONS_00064412 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
G6PI8.160e-5169.23Glucose-6-phosphate isomerase OS=Homo sapiens GN=G... [more]
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