TCONS_00064406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064406
Unique NameTCONS_00064406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064406 ID=TCONS_00064406|Name=TCONS_00064406|organism=Clytia hemisphaerica|type=transcript|length=863bp
GTGAGTCTGGCTGAAATTATCAGAGccaggctgcatcatttgaaaattcc
aggcATGTGGTCAATCACTCTCCTTATAAACCTTTTAGTTGTAAAACTAA
CTTAATTGTGAGTGATTGATCACACTCCTCAAACATTAGGTGTTTGTAGA
GGTGTTACGTTCTATTGCACGCCTTAAAAGATGCAGCCTGCAGAACAAAT
CTGCATCATCTCAAGATTTGGCCCTTCCTTGTCAGGGGCAGAAAATTGAC
CCCAGTAAGTTGCTATTAATGCAACCTTAGCTTAGTTTTGTTCCCATTAT
TTTTTCAGGTAAAGGTGTATTTGCAACGAAAGACTTTTCAGTTGGTGATT
TCTTGATGGAATATGCtgTCTGGATGCGACTTGTTCAAAGCAACTTGGAA
AATTTGTCAACGACACAGTTCACAAAAGGGCAAATGCCTACACCAAAAAG
ATTCACACTGAAACTGGCATCTTTGTTTATTTGCAAAGACTGATATAGAA
GTTGGGACTGAAATTAGATACGATTATGGAGACGCTGATGTTTTTTGTGC
ATGGCGATCAAAGGATGAAAATCTTGAGCCCATTAAAAAATCTTTGGTAA
GTTTCATTTGTACTTGAAATGTAATTTTTAAGGtcctaaaagtttttttt
cacaatttacccCTTCACCCATTTTTGAATCAAAATATCCTGTAACTACT
AAATTGAATTAAGAAAAACTGTTCCTGCAATCTGTTAATTAAATCCCCAT
CTAAATTTGTATTAACAAAGCAGGATAACTTTAGTGGTGAAGAAGTAAAG
CTCGAATCTCATTGGctatccattttttcaaaaatccaggctATTTATTA
TCGAAGATTCAGG
Run BLAST on NCBI

transcript from alignment at scaffold_413:81604..84978-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064406 ID=TCONS_00064406|Name=TCONS_00064406|organism=Clytia hemisphaerica|type=transcript|length=3375bp|location=Sequence derived from alignment at scaffold_413:81604..84978- (Clytia hemisphaerica)
GTGAGTCTGGCTGAAATTATCAGAGCCAGGCTGCATCATTTGAAAATTCC
AGGCATGTGGTCAATCACTCTCCTTATAAACCTTTTAGTTGTAAAACTAA
CTTAATTGTGAGTGATTGATCACACTCCTCAAACATTAGGTGTTTGTAGA
GGTGTTACGTTCTATTGCACGCCTTAAAAGATGCAGCCTGCAGAACAAAT
CTGCATCATCTCAAGATTTGGCCCTTCCTTGTCAGGGGCAGAAAATTGAC
CCCAGTAAGTTGCTATTAATGCAACCTTAGCTTAGTTTTGTTCCCATTAT
TTTTTCAGGTAAAGGTGTATTTGCAACGAAAGACTTTTCAGTTGGTGATT
TCTTGATGGAATATGCTGGTAAATCTATTTTTTTAATAAGCATTAGCCAA
GTCCTTTGAAGTGAATTAAAGAAATATCAATATCAAGTTCAATTTTTCAG
TTCAGTGGATAAAGCAGAGTTGAAGCAAACCTGAGACAATAGAATCTGAA
GTCCACCAGAGACAGACATTATCTTATCGTATATCTTACAGAACATACTT
TCATAGAAACTTATGTTTCGTTGAATAATTTTAAATTATAGTAACTCTTA
AAACCAACTTTCATAGATTTTTCATTTCTTTCATCATTTTTCAGAATAAA
ATTTCCTGGTTTTCACCCGAAACCCTGAAAATTAGCTCCAATAAAATTTG
ATGTCCTATAGCTAGAGAAACTTTGCTTTCAGTGAGATGATAATGTCTAT
ATACTAAGCCAGCATGAACATTATTTAGGTGAACGAATCTTGTATGAAGA
GGCAGTAGAGAGAGAAAGGAGATACGAGAAAGATGGAATGGGATGTTTCA
TCTATTTTGGAATTGAAGGAAAAAATGGGACATTTTGGTAAGCAAGTGTT
CCTTAAGCACGCCTCTAGAGATACCATGTTTCAGTTATATTAGAATGTAG
CAGTGTCAGTATTTATGTGTATATCCATGAAAAATTTTAATTCTTTGGGT
AGATGTTTAGTATAAGGAGGGGGAGAAAGTGCCTACTTCGCAACAATAAA
AAAGAACGGCAAATTTCGCCATCCACAACCCCTACCGCTTTCGTTTCGCC
ACCCTAGAGATTCACCCCTCTTTGTTTGTGACCCTCTTTAACTACATGTT
GTTTAAAGTTACACATTTTATTTAAAAAAAATATATATAAACAATACATG
TGAAATAGGCACTTCCCCGATCTGAGTAAAAGTGTATAATCCATAGTAGA
AGCTTGGAGCAAGGACGAATGATCAGAGCATTACTCCCTGTTCTTTGAAT
TAGAATTGGGGCCGAAGATATTTTCAATGTGAATTAAGATTAGCACAAGA
GGTTTCATGGTCTTAGTTATTGTTGTCTTGATGATCAACTTTTAACCTTT
ATGTTTCATTTTCATAGTCTGGATGCGACTTGTTCAAAGCAACTTGGAAA
GTAAGAATTACTTTTATAAACTAATTGTATAATTGTGCTCTGACAAGCTT
TCAAGCATTCAAGAATTGTAAATCGTACTTACACTAAATGCTTGTAAAGT
TGCAGAAATCTAAGTACCCTTTTTATGACTGGTATTGGTTTACCAAACCG
CTCAATTCCTAATTCTTGAATCTAATTTCTATTTAAGATTTGTCAACGAC
ACAGTTCACAAAAGGGCAAATGCCTACACCAAAAAGATTCACACTGAAAC
TGGCATCTTTGTTTATTTGCAAAGACTGATATAGAAGTTGGGACTGAAAT
TAGGTAAGTTTTGATAAATTAACATAGCGCTCCGCAACCCATACGTCGTA
ATTATTACTTTTTACCTTTTTTGACATTTGTACGAGTTGCAATCCCACAA
TTCAACGCGGCTCAATTAAAGATACGTGCAAGCTGTTACATATCCTTTGT
CAAACGATGCAATTAACGTGCAAAAGAGATTAACGAAAAGGTTGATGGGA
TTGGAACTCGTACAAACACATCGAGAGTAATGATTATGTCAAAAATAAAA
TATATTTTTAGATTCAGCGCGGTGCGCNTTGATGGGATTGGAACTCGTAC
AAACACATCGAGAGTAATGATTATGTCAAAAATAAAATATATTTTTAGAT
TCAGCGCGGTGCGCTATTGCAGTTAAGATGAATTCATTTTTAAAGATTAT
CAATAGAATCCTACCCCAGGAAGATAGGAGGTAGAGAAAAAGATTTTCGT
GCAAGGGGGGAGTGAAAATTTCAAGCTTGGTGGGGGAAGAAAGGGAAATG
AGGGATATCCAGGAATTCCATAATATTTTCCTTGATTTGTTTGCATCTGG
GAGTACCTTTAAGAAAACACTTGACTTACTATTTTGACTGTAAGGAACTG
CTACTATGCTAGTATTAGAACTAATACATAAAAATATTGTGATTTCTCAA
AACAAGTGGGTCTTGCAAATGGAATTGCAGTTCCAATGCTCCAGTGGATT
TTAACTTTATCTTCTTTCCCAGATACGATTATGGAGACGCTGATGTTTTT
TGTGCATGGCGATCAAAGGTAATGTGAAAATAATAATTATAATAGTCAAC
TTGAGGTTTCATTTTCCATATCTGTTTGTACACCGCGATAATCGTTGTTA
TTTAAAGGTTTTCTTTTGATTGAAGGGTCTGGCGATGCTGAGTCTAAAAT
ATTTCATAAACGCTCACGCATGTGCACTAGTCATCAGTATGCGCATGTGT
ATGGAAAAACAAGTGCAACAATATTAAAAAAAGCTTTTGAAATGATAACG
TATATTTAAAACACATTTCTCACACAAGGAGCCTTTATTGAATGTTTTTA
TGCATACAATAAATAGAACGTTATCTATATATAGATCAAAACATTCGATT
GCAAACTTGTTTGAAATCAACTTTGCTATATTTTTGTTTATAAAAGCAAT
AGAATGTGAGGTCACAGATGTAACAACTTTCGATCTTTCATTTTGCTTTG
AGGTTATCATTGCGTAAAAAAGTAGCTTTTATTTATCTGACTCAGCATCG
AGGTGCCACCCTTTATGTCGCTATCTTTTACCCCCAACTATTATCTTTAT
AGACATTGAAAACTCTTTTTTTAAGGATGAAAATCTTGAGCCCATTAAAA
AATCTTTGGTAAGTTTCATTTGTACTTGAAATGTAATTTTTAAGGTCCTA
AAAGTTTTTTTTCACAATTTACCCCTTCACCCATTTTTGAATCAAAATAT
CCTGTAACTACTAAATTGAATTAAGAAAAACTGTTCCTGCAATCTGTTAA
TTAAATCCCCATCTAAATTTGTATTAACAAAGCAGGATAACTTTAGTGGT
GAAGAAGTAAAGCTCGAATCTCATTGGCTATCCATTTTTTCAAAAATCCA
GGCTATTTATTATCGAAGATTCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040384XLOC_040384Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064406-exon-scaffold_413-1575043694:84611..84978TCONS_00064406-exon-scaffold_413-1575043694:84611..84978Clytia hemisphaericaexon
TCONS_00064406-exon-scaffold_413-1575043694:83529..83561TCONS_00064406-exon-scaffold_413-1575043694:83529..83561Clytia hemisphaericaexon
TCONS_00064406-exon-scaffold_413-1575043694:83226..83341TCONS_00064406-exon-scaffold_413-1575043694:83226..83341Clytia hemisphaericaexon
TCONS_00064406-exon-scaffold_413-1575043694:82461..82506TCONS_00064406-exon-scaffold_413-1575043694:82461..82506Clytia hemisphaericaexon
TCONS_00064406-exon-scaffold_413-1575043694:81604..81903TCONS_00064406-exon-scaffold_413-1575043694:81604..81903Clytia hemisphaericaexon
TCONS_00064406-exon-scaffold_413-1510915933:84611..84978TCONS_00064406-exon-scaffold_413-1510915933:84611..84978Clytia hemisphaericaexon
TCONS_00064406-exon-scaffold_413-1510915933:83529..83561TCONS_00064406-exon-scaffold_413-1510915933:83529..83561Clytia hemisphaericaexon
TCONS_00064406-exon-scaffold_413-1510915933:83226..83341TCONS_00064406-exon-scaffold_413-1510915933:83226..83341Clytia hemisphaericaexon
TCONS_00064406-exon-scaffold_413-1510915933:82461..82506TCONS_00064406-exon-scaffold_413-1510915933:82461..82506Clytia hemisphaericaexon
TCONS_00064406-exon-scaffold_413-1510915933:81604..81903TCONS_00064406-exon-scaffold_413-1510915933:81604..81903Clytia hemisphaericaexon
TCONS_00064406-exon-scaffold_413-1491911889:84611..84978TCONS_00064406-exon-scaffold_413-1491911889:84611..84978Clytia hemisphaericaexon
TCONS_00064406-exon-scaffold_413-1491911889:83529..83561TCONS_00064406-exon-scaffold_413-1491911889:83529..83561Clytia hemisphaericaexon
TCONS_00064406-exon-scaffold_413-1491911889:83226..83341TCONS_00064406-exon-scaffold_413-1491911889:83226..83341Clytia hemisphaericaexon
TCONS_00064406-exon-scaffold_413-1491911889:82461..82506TCONS_00064406-exon-scaffold_413-1491911889:82461..82506Clytia hemisphaericaexon
TCONS_00064406-exon-scaffold_413-1491911889:81604..81903TCONS_00064406-exon-scaffold_413-1491911889:81604..81903Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_413supercontigscaffold_413:81604..84978 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.10984	3.02454	1.36837	1.41444	2.02756	0.782	1.43775	1.40901	0.353927	0.735113	0	0	0	0	0	0	0	0	0	0	0.411679	0.289148	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top