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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064396 ID=TCONS_00064396|Name=TCONS_00064396|organism=Clytia hemisphaerica|type=transcript|length=1095bp
ATTTGACAACTGATCAATCCTTGGTTAGCCTTACCATCAAAAACTTATTT
ACTACCGTATACTATTTTACATGGTATGTGAAACCCAGatCAAGATATGG
CTTCTTCATCGGTTCCATCATCACCTTGGACACCAAggaaaaagcaaaag
aaagatGATGGAAAACGAGAAGATTTGCTGGGTTATGTTGTTCACATTAG
CACCATGAAGATGACTCCTGCGAAGACGGCGGATGGTAAACAAACCTCAT
TTTTTGATATCACAGTCTCAACAGAGTAAACTGAAAAACGAGTTGCTGTA
TGGGCTATCGATACACGTCCACTCATGGAAAAAAAACTCaacaaaggtat
tttattggcAAATATGCGTACTGGAAACGATTTCAATTTCGATGAATACT
CCAACATGCACGATGCCGAACCAAAATTCCCATTGAAGCGATTTTTACGT
CCCGTCAGTACAATATCCGAAGCATTGACAAACAAGCCATTATGGTCAAG
AGTTACGCTGAAGGTAAAAGTAATTGACATAGATCCTGTCATTTCTCACA
ACAACTTACGTATCATGTCGTGTCAAGTGATTGACACAAGTGTCAATGAT
CCAAAGCAGCTCACATTCTTTGATAAATTAGTAAATGTCGAAACTGTCAA
GTTGAGTAAATGTTATGAAGTGACAGAAATTACCGAGTCAAAATTTAGTG
GGCGTAGGGTATTAGATCAAACTGTGATCACGACACTCGCCGACACCGAA
ATCAACATTGTTTCTCAATCTTCAGCTTATGAATCAATAACAGGACAATT
TCAAACGTGACCATGTCTTCACTAGAGCCTGTTTACATTTGCCCATATTG
CAAAAGTATTGTAGATCTTAATGAACATATTTTCATTTGCACTAACAGTA
TTTGTTCGAAAGTCTCTGGAAAAGAAGATGTGATTAAGAAAGCTGAAGTT
AAATTCAGTGTCAAAGCAAGTAGTGGTTTAGTAAATTTGTCTTGTGTCAA
TTCAAAAATAGTTGTGTTAACCACAGAtgacatttcaaacaaaatttcat
ttttaaaacaacTAATTGGGATGCGTGTGAAagtgaaatattcaa Run BLAST on NCBI protein sequence of TCONS_00064396-protein >TCONS_00064396-protein ID=TCONS_00064396-protein|Name=TCONS_00064396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MEKKLNKGILLANMRTGNDFNFDEYSNMHDAEPKFPLKRFLRPVSTISEA
LTNKPLWSRVTLKVKVIDIDPVISHNNLRIMSCQVIDTSVNDPKQLTFFD
KLVNVETVKLSKCYEVTEITESKFSGRRVLDQTVITTLADTEINIVSQSS
AYESITGQFQT Run BLAST on NCBI transcript from alignment at scaffold_413:12751..14333+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064396 ID=TCONS_00064396|Name=TCONS_00064396|organism=Clytia hemisphaerica|type=transcript|length=1583bp|location=Sequence derived from alignment at scaffold_413:12751..14333+ (Clytia hemisphaerica)
ATTTGACAACTGATCAATCCTTGGTTAGCCTTACCATCAAAAACTTATTT
ACTACCGTATACTATTTTACATGGTATGTGAAACCCAGGTAGGTCCTTTT
CCAGGAAATCTTCATTTAATCTAATACGCAGTatctttttcaaacaattt
ctaCTCTGCTGTGCTTCGATCAGGCTAGCAAAAATAGGTAAAggtaaaaa
tgttgaaattttacactgaaagttgaaattttacactgaaaaattaaact
ttcaTACGTTCTAATACATTACATTCATACACACTTTATTTTCTGAATTC
ATCACAGTTACTCTACTTTACTTCACTTTGTgaaaacagttttttatgtt
ttattttcagatCAAGATATGGCTTCTTCATCGGTTCCATCATCACCTTG
GACACCAAggaaaaagcaaaagaaagatGGTATGTCtttgaccctttttt
ctgtAATATATAAATGGATTTAACTTCTCCAATTTCGATATAGCAAGTTA
CTTATACGACTAGCAGGTCCCAAGATAAATTCAGAAATCTCATTCACAAC
AAGTTGACCTCCCTGACCTGAATGTGGTCCAAATTTACAGTATTCAACAC
ATTTTATGATATGAGATTTTCATTCTTTGTCTTTATTTGTTTCAGATGGA
AAACGAGAAGATTTGCTGGGTTATGTTGTTCACATTAGCACCATGAAGAT
GACTCCTGCGAAGACGGCGGATGGTAAACAAACCTCATTTTTTGATATCA
CAGTCTCAACAGAGTAAACTGAAAAACGAGTTGCTGTATGGGCTATCGAT
ACACGTCCACTCATGGAAAAAAAACTCaacaaaggtattttattggcAAA
TATGCGTACTGGAAACGATTTCAATTTCGATGAATACTCCAACATGCACG
ATGCCGAACCAAAATTCCCATTGAAGCGATTTTTACGTCCCGTCAGTACA
ATATCCGAAGCATTGACAAACAAGCCATTATGGTCAAGAGTTACGCTGAA
GGTAAAAGTAATTGACATAGATCCTGTCATTTCTCACAACAACTTACGTA
TCATGTCGTGTCAAGTGATTGACACAAGTGTCAATGATCCAAAGCAGCTC
ACATTCTTTGATAAATTAGTAAATGTCGAAACTGTCAAGTTGAGTAAATG
TTATGAAGTGACAGAAATTACCGAGTCAAAATTTAGTGGGCGTAGGGTAT
TAGATCAAACTGTGATCACGACACTCGCCGACACCGAAATCAACATTGTT
TCTCAATCTTCAGCTTATGAATCAATAACAGGACAATTTCAAACGTGACC
ATGTCTTCACTAGAGCCTGTTTACATTTGCCCATATTGCAAAAGTATTGT
AGATCTTAATGAACATATTTTCATTTGCACTAACAGTATTTGTTCGAAAG
TCTCTGGAAAAGAAGATGTGATTAAGAAAGCTGAAGTTAAATTCAGTGTC
AAAGCAAGTAGTGGTTTAGTAAATTTGTCTTGTGTCAATTCAAAAATAGT
TGTGTTAACCACAGAtgacatttcaaacaaaatttcatttttaaaacaac
TAATTGGGATGCGTGTGAAagtgaaatattcaa Coding sequence (CDS) from alignment at scaffold_413:12751..14333+ >TCONS_00064396 ID=TCONS_00064396|Name=TCONS_00064396|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_413:12751..14333+ (Clytia hemisphaerica)
ATGGAAAAAAAACTCaacaaaggtattttattggcAAATATGCGTACTGG
AAACGATTTCAATTTCGATGAATACTCCAACATGCACGATGCCGAACCAA
AATTCCCATTGAAGCGATTTTTACGTCCCGTCAGTACAATATCCGAAGCA
TTGACAAACAAGCCATTATGGTCAAGAGTTACGCTGAAGGTAAAAGTAAT
TGACATAGATCCTGTCATTTCTCACAACAACTTACGTATCATGTCGTGTC
AAGTGATTGACACAAGTGTCAATGATCCAAAGCAGCTCACATTCTTTGAT
AAATTAGTAAATGTCGAAACTGTCAAGTTGAGTAAATGTTATGAAGTGAC
AGAAATTACCGAGTCAAAATTTAGTGGGCGTAGGGTATTAGATCAAACTG
TGATCACGACACTCGCCGACACCGAAATCAACATTGTTTCTCAATCTTCA
GCTTATGAATCAATAACAGGACAATTTCAAACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064396-exon-scaffold_413-1491911889:12751..12838 | TCONS_00064396-exon-scaffold_413-1491911889:12751..12838 | Clytia hemisphaerica | exon |
| TCONS_00064396-exon-scaffold_413-1510915933:12751..12838 | TCONS_00064396-exon-scaffold_413-1510915933:12751..12838 | Clytia hemisphaerica | exon |
| TCONS_00064396-exon-scaffold_413-1575043694:12751..12838 | TCONS_00064396-exon-scaffold_413-1575043694:12751..12838 | Clytia hemisphaerica | exon |
| TCONS_00064396-exon-scaffold_413-1491911889:13111..13179 | TCONS_00064396-exon-scaffold_413-1491911889:13111..13179 | Clytia hemisphaerica | exon |
| TCONS_00064396-exon-scaffold_413-1510915933:13111..13179 | TCONS_00064396-exon-scaffold_413-1510915933:13111..13179 | Clytia hemisphaerica | exon |
| TCONS_00064396-exon-scaffold_413-1575043694:13111..13179 | TCONS_00064396-exon-scaffold_413-1575043694:13111..13179 | Clytia hemisphaerica | exon |
| TCONS_00064396-exon-scaffold_413-1491911889:13396..14333 | TCONS_00064396-exon-scaffold_413-1491911889:13396..14333 | Clytia hemisphaerica | exon |
| TCONS_00064396-exon-scaffold_413-1510915933:13396..14333 | TCONS_00064396-exon-scaffold_413-1510915933:13396..14333 | Clytia hemisphaerica | exon |
| TCONS_00064396-exon-scaffold_413-1575043694:13396..14333 | TCONS_00064396-exon-scaffold_413-1575043694:13396..14333 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_413 | supercontig | scaffold_413:12751..14333 + |
Blast
The following BLAST results are available for this feature:
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