TCONS_00064396 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064396
Unique NameTCONS_00064396
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1095

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064396 ID=TCONS_00064396|Name=TCONS_00064396|organism=Clytia hemisphaerica|type=transcript|length=1095bp
ATTTGACAACTGATCAATCCTTGGTTAGCCTTACCATCAAAAACTTATTT
ACTACCGTATACTATTTTACATGGTATGTGAAACCCAGatCAAGATATGG
CTTCTTCATCGGTTCCATCATCACCTTGGACACCAAggaaaaagcaaaag
aaagatGATGGAAAACGAGAAGATTTGCTGGGTTATGTTGTTCACATTAG
CACCATGAAGATGACTCCTGCGAAGACGGCGGATGGTAAACAAACCTCAT
TTTTTGATATCACAGTCTCAACAGAGTAAACTGAAAAACGAGTTGCTGTA
TGGGCTATCGATACACGTCCACTCATGGAAAAAAAACTCaacaaaggtat
tttattggcAAATATGCGTACTGGAAACGATTTCAATTTCGATGAATACT
CCAACATGCACGATGCCGAACCAAAATTCCCATTGAAGCGATTTTTACGT
CCCGTCAGTACAATATCCGAAGCATTGACAAACAAGCCATTATGGTCAAG
AGTTACGCTGAAGGTAAAAGTAATTGACATAGATCCTGTCATTTCTCACA
ACAACTTACGTATCATGTCGTGTCAAGTGATTGACACAAGTGTCAATGAT
CCAAAGCAGCTCACATTCTTTGATAAATTAGTAAATGTCGAAACTGTCAA
GTTGAGTAAATGTTATGAAGTGACAGAAATTACCGAGTCAAAATTTAGTG
GGCGTAGGGTATTAGATCAAACTGTGATCACGACACTCGCCGACACCGAA
ATCAACATTGTTTCTCAATCTTCAGCTTATGAATCAATAACAGGACAATT
TCAAACGTGACCATGTCTTCACTAGAGCCTGTTTACATTTGCCCATATTG
CAAAAGTATTGTAGATCTTAATGAACATATTTTCATTTGCACTAACAGTA
TTTGTTCGAAAGTCTCTGGAAAAGAAGATGTGATTAAGAAAGCTGAAGTT
AAATTCAGTGTCAAAGCAAGTAGTGGTTTAGTAAATTTGTCTTGTGTCAA
TTCAAAAATAGTTGTGTTAACCACAGAtgacatttcaaacaaaatttcat
ttttaaaacaacTAATTGGGATGCGTGTGAAagtgaaatattcaa
Run BLAST on NCBI

protein sequence of TCONS_00064396-protein

>TCONS_00064396-protein ID=TCONS_00064396-protein|Name=TCONS_00064396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MEKKLNKGILLANMRTGNDFNFDEYSNMHDAEPKFPLKRFLRPVSTISEA
LTNKPLWSRVTLKVKVIDIDPVISHNNLRIMSCQVIDTSVNDPKQLTFFD
KLVNVETVKLSKCYEVTEITESKFSGRRVLDQTVITTLADTEINIVSQSS
AYESITGQFQT
Run BLAST on NCBI

transcript from alignment at scaffold_413:12751..14333+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064396 ID=TCONS_00064396|Name=TCONS_00064396|organism=Clytia hemisphaerica|type=transcript|length=1583bp|location=Sequence derived from alignment at scaffold_413:12751..14333+ (Clytia hemisphaerica)
ATTTGACAACTGATCAATCCTTGGTTAGCCTTACCATCAAAAACTTATTT
ACTACCGTATACTATTTTACATGGTATGTGAAACCCAGGTAGGTCCTTTT
CCAGGAAATCTTCATTTAATCTAATACGCAGTatctttttcaaacaattt
ctaCTCTGCTGTGCTTCGATCAGGCTAGCAAAAATAGGTAAAggtaaaaa
tgttgaaattttacactgaaagttgaaattttacactgaaaaattaaact
ttcaTACGTTCTAATACATTACATTCATACACACTTTATTTTCTGAATTC
ATCACAGTTACTCTACTTTACTTCACTTTGTgaaaacagttttttatgtt
ttattttcagatCAAGATATGGCTTCTTCATCGGTTCCATCATCACCTTG
GACACCAAggaaaaagcaaaagaaagatGGTATGTCtttgaccctttttt
ctgtAATATATAAATGGATTTAACTTCTCCAATTTCGATATAGCAAGTTA
CTTATACGACTAGCAGGTCCCAAGATAAATTCAGAAATCTCATTCACAAC
AAGTTGACCTCCCTGACCTGAATGTGGTCCAAATTTACAGTATTCAACAC
ATTTTATGATATGAGATTTTCATTCTTTGTCTTTATTTGTTTCAGATGGA
AAACGAGAAGATTTGCTGGGTTATGTTGTTCACATTAGCACCATGAAGAT
GACTCCTGCGAAGACGGCGGATGGTAAACAAACCTCATTTTTTGATATCA
CAGTCTCAACAGAGTAAACTGAAAAACGAGTTGCTGTATGGGCTATCGAT
ACACGTCCACTCATGGAAAAAAAACTCaacaaaggtattttattggcAAA
TATGCGTACTGGAAACGATTTCAATTTCGATGAATACTCCAACATGCACG
ATGCCGAACCAAAATTCCCATTGAAGCGATTTTTACGTCCCGTCAGTACA
ATATCCGAAGCATTGACAAACAAGCCATTATGGTCAAGAGTTACGCTGAA
GGTAAAAGTAATTGACATAGATCCTGTCATTTCTCACAACAACTTACGTA
TCATGTCGTGTCAAGTGATTGACACAAGTGTCAATGATCCAAAGCAGCTC
ACATTCTTTGATAAATTAGTAAATGTCGAAACTGTCAAGTTGAGTAAATG
TTATGAAGTGACAGAAATTACCGAGTCAAAATTTAGTGGGCGTAGGGTAT
TAGATCAAACTGTGATCACGACACTCGCCGACACCGAAATCAACATTGTT
TCTCAATCTTCAGCTTATGAATCAATAACAGGACAATTTCAAACGTGACC
ATGTCTTCACTAGAGCCTGTTTACATTTGCCCATATTGCAAAAGTATTGT
AGATCTTAATGAACATATTTTCATTTGCACTAACAGTATTTGTTCGAAAG
TCTCTGGAAAAGAAGATGTGATTAAGAAAGCTGAAGTTAAATTCAGTGTC
AAAGCAAGTAGTGGTTTAGTAAATTTGTCTTGTGTCAATTCAAAAATAGT
TGTGTTAACCACAGAtgacatttcaaacaaaatttcatttttaaaacaac
TAATTGGGATGCGTGTGAAagtgaaatattcaa

Coding sequence (CDS) from alignment at scaffold_413:12751..14333+

>TCONS_00064396 ID=TCONS_00064396|Name=TCONS_00064396|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_413:12751..14333+ (Clytia hemisphaerica)
ATGGAAAAAAAACTCaacaaaggtattttattggcAAATATGCGTACTGG
AAACGATTTCAATTTCGATGAATACTCCAACATGCACGATGCCGAACCAA
AATTCCCATTGAAGCGATTTTTACGTCCCGTCAGTACAATATCCGAAGCA
TTGACAAACAAGCCATTATGGTCAAGAGTTACGCTGAAGGTAAAAGTAAT
TGACATAGATCCTGTCATTTCTCACAACAACTTACGTATCATGTCGTGTC
AAGTGATTGACACAAGTGTCAATGATCCAAAGCAGCTCACATTCTTTGAT
AAATTAGTAAATGTCGAAACTGTCAAGTTGAGTAAATGTTATGAAGTGAC
AGAAATTACCGAGTCAAAATTTAGTGGGCGTAGGGTATTAGATCAAACTG
TGATCACGACACTCGCCGACACCGAAATCAACATTGTTTCTCAATCTTCA
GCTTATGAATCAATAACAGGACAATTTCAAACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040379XLOC_040379Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064396-exon-scaffold_413-1491911889:12751..12838TCONS_00064396-exon-scaffold_413-1491911889:12751..12838Clytia hemisphaericaexon
TCONS_00064396-exon-scaffold_413-1510915933:12751..12838TCONS_00064396-exon-scaffold_413-1510915933:12751..12838Clytia hemisphaericaexon
TCONS_00064396-exon-scaffold_413-1575043694:12751..12838TCONS_00064396-exon-scaffold_413-1575043694:12751..12838Clytia hemisphaericaexon
TCONS_00064396-exon-scaffold_413-1491911889:13111..13179TCONS_00064396-exon-scaffold_413-1491911889:13111..13179Clytia hemisphaericaexon
TCONS_00064396-exon-scaffold_413-1510915933:13111..13179TCONS_00064396-exon-scaffold_413-1510915933:13111..13179Clytia hemisphaericaexon
TCONS_00064396-exon-scaffold_413-1575043694:13111..13179TCONS_00064396-exon-scaffold_413-1575043694:13111..13179Clytia hemisphaericaexon
TCONS_00064396-exon-scaffold_413-1491911889:13396..14333TCONS_00064396-exon-scaffold_413-1491911889:13396..14333Clytia hemisphaericaexon
TCONS_00064396-exon-scaffold_413-1510915933:13396..14333TCONS_00064396-exon-scaffold_413-1510915933:13396..14333Clytia hemisphaericaexon
TCONS_00064396-exon-scaffold_413-1575043694:13396..14333TCONS_00064396-exon-scaffold_413-1575043694:13396..14333Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064396-proteinTCONS_00064396-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_413supercontigscaffold_413:12751..14333 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	22.9805	16.6537	9.8904	11.5097	12.7425	12.9273	17.4242	24.328	8.64167	7.40621	0	0	0	0	0	0	0	0	0	0	2.26246	3.72273	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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