TCONS_00064395 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064395
Unique NameTCONS_00064395
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1038

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064395 ID=TCONS_00064395|Name=TCONS_00064395|organism=Clytia hemisphaerica|type=transcript|length=1038bp
TTGGGAGAATTTGACAACTGATCAATCCTTGatCAAGATATGGCTTCTTC
ATCGGTTCCATCATCACCTTGGACACCAAggaaaaagcaaaagaaagatG
ATGGAAAACGAGAAGATTTGCTGGGTTATGTTGTTCACATTAGCACCATG
AAGATGACTCCTGCGAAGACGGCGGATGGTAAACAAACCTCATTTTTTGA
TATCACAGTCTCAACAGAGTAAACTGAAAAACGAGTTGCTGTATGGGCTA
TCGATACACGTCCACTCATGGAAAAAAAACTCaacaaaggtattttattg
gcAAATATGCGTACTGGAAACGATTTCAATTTCGATGAATACTCCAACAT
GCACGATGCCGAACCAAAATTCCCATTGAAGCGATTTTTACGTCCCGTCA
GTACAATATCCGAAGCATTGACAAACAAGCCATTATGGTCAAGAGTTACG
CTGAAGGTAAAAGTAATTGACATAGATCCTGTCATTTCTCACAACAACTT
ACGTATCATGTCGTGTCAAGTGATTGACACAAGTGTCAATGATCCAAAGC
AGCTCACATTCTTTGATAAATTAGTAAATGTCGAAACTGTCAAGTTGAGT
AAATGTTATGAAGTGACAGAAATTACCGAGTCAAAATTTAGTGGGCGTAG
GGTATTAGATCAAACTGTGATCACGACACTCGCCGACACCGAAATCAACA
TTGTTTCTCAATCTTCAGCTTATGAATCAATAACAGGACAATTTCAAACG
TGACCATGTCTTCACTAGAGCCTGTTTACATTTGCCCATATTGCAAAAGT
ATTGTAGATCTTAATGAACATATTTTCATTTGCACTAACAGTATTTGTTC
GAAAGTCTCTGGAAAAGAAGATGTGATTAAGAAAGCTGAAGTTAAATTCA
GTGTCAAAGCAAGTAGTGGTTTAGTAAATTTGTCTTGTGTCAATTCAAAA
ATAGTTGTGTTAACCACAGAtgacatttcaaacaaaatttcatttttaaa
acaacTAATTGGGATGCGTGTGAAagtgaaatattcaa
Run BLAST on NCBI

transcript from alignment at scaffold_413:12743..14333+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064395 ID=TCONS_00064395|Name=TCONS_00064395|organism=Clytia hemisphaerica|type=transcript|length=1591bp|location=Sequence derived from alignment at scaffold_413:12743..14333+ (Clytia hemisphaerica)
TTGGGAGAATTTGACAACTGATCAATCCTTGGTTAGCCTTACCATCAAAA
ACTTATTTACTACCGTATACTATTTTACATGGTATGTGAAACCCAGGTAG
GTCCTTTTCCAGGAAATCTTCATTTAATCTAATACGCAGTatctttttca
aacaatttctaCTCTGCTGTGCTTCGATCAGGCTAGCAAAAATAGGTAAA
ggtaaaaatgttgaaattttacactgaaagttgaaattttacactgaaaa
attaaactttcaTACGTTCTAATACATTACATTCATACACACTTTATTTT
CTGAATTCATCACAGTTACTCTACTTTACTTCACTTTGTgaaaacagttt
tttatgttttattttcagatCAAGATATGGCTTCTTCATCGGTTCCATCA
TCACCTTGGACACCAAggaaaaagcaaaagaaagatGGTATGTCtttgac
ccttttttctgtAATATATAAATGGATTTAACTTCTCCAATTTCGATATA
GCAAGTTACTTATACGACTAGCAGGTCCCAAGATAAATTCAGAAATCTCA
TTCACAACAAGTTGACCTCCCTGACCTGAATGTGGTCCAAATTTACAGTA
TTCAACACATTTTATGATATGAGATTTTCATTCTTTGTCTTTATTTGTTT
CAGATGGAAAACGAGAAGATTTGCTGGGTTATGTTGTTCACATTAGCACC
ATGAAGATGACTCCTGCGAAGACGGCGGATGGTAAACAAACCTCATTTTT
TGATATCACAGTCTCAACAGAGTAAACTGAAAAACGAGTTGCTGTATGGG
CTATCGATACACGTCCACTCATGGAAAAAAAACTCaacaaaggtatttta
ttggcAAATATGCGTACTGGAAACGATTTCAATTTCGATGAATACTCCAA
CATGCACGATGCCGAACCAAAATTCCCATTGAAGCGATTTTTACGTCCCG
TCAGTACAATATCCGAAGCATTGACAAACAAGCCATTATGGTCAAGAGTT
ACGCTGAAGGTAAAAGTAATTGACATAGATCCTGTCATTTCTCACAACAA
CTTACGTATCATGTCGTGTCAAGTGATTGACACAAGTGTCAATGATCCAA
AGCAGCTCACATTCTTTGATAAATTAGTAAATGTCGAAACTGTCAAGTTG
AGTAAATGTTATGAAGTGACAGAAATTACCGAGTCAAAATTTAGTGGGCG
TAGGGTATTAGATCAAACTGTGATCACGACACTCGCCGACACCGAAATCA
ACATTGTTTCTCAATCTTCAGCTTATGAATCAATAACAGGACAATTTCAA
ACGTGACCATGTCTTCACTAGAGCCTGTTTACATTTGCCCATATTGCAAA
AGTATTGTAGATCTTAATGAACATATTTTCATTTGCACTAACAGTATTTG
TTCGAAAGTCTCTGGAAAAGAAGATGTGATTAAGAAAGCTGAAGTTAAAT
TCAGTGTCAAAGCAAGTAGTGGTTTAGTAAATTTGTCTTGTGTCAATTCA
AAAATAGTTGTGTTAACCACAGAtgacatttcaaacaaaatttcattttt
aaaacaacTAATTGGGATGCGTGTGAAagtgaaatattcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040379XLOC_040379Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064395-exon-scaffold_413-1491911889:12743..12773TCONS_00064395-exon-scaffold_413-1491911889:12743..12773Clytia hemisphaericaexon
TCONS_00064395-exon-scaffold_413-1510915933:12743..12773TCONS_00064395-exon-scaffold_413-1510915933:12743..12773Clytia hemisphaericaexon
TCONS_00064395-exon-scaffold_413-1575043694:12743..12773TCONS_00064395-exon-scaffold_413-1575043694:12743..12773Clytia hemisphaericaexon
TCONS_00064395-exon-scaffold_413-1491911889:13111..13179TCONS_00064395-exon-scaffold_413-1491911889:13111..13179Clytia hemisphaericaexon
TCONS_00064395-exon-scaffold_413-1510915933:13111..13179TCONS_00064395-exon-scaffold_413-1510915933:13111..13179Clytia hemisphaericaexon
TCONS_00064395-exon-scaffold_413-1575043694:13111..13179TCONS_00064395-exon-scaffold_413-1575043694:13111..13179Clytia hemisphaericaexon
TCONS_00064395-exon-scaffold_413-1491911889:13396..14333TCONS_00064395-exon-scaffold_413-1491911889:13396..14333Clytia hemisphaericaexon
TCONS_00064395-exon-scaffold_413-1510915933:13396..14333TCONS_00064395-exon-scaffold_413-1510915933:13396..14333Clytia hemisphaericaexon
TCONS_00064395-exon-scaffold_413-1575043694:13396..14333TCONS_00064395-exon-scaffold_413-1575043694:13396..14333Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_413supercontigscaffold_413:12743..14333 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.802051	0.498726	0	0	1.94254e-06	1.07218e-06	1.17052	0	0	0	0	0	0	0	0	0	0	0	0	1.11068	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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