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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064389 ID=TCONS_00064389|Name=TCONS_00064389|organism=Clytia hemisphaerica|type=transcript|length=3105bp
GACGGCTCTGTCTTGGATCAAGGATCAAGGACTTTTAAAGTAGAACTCTT
CTTAATTCTTAATATGCTTACTGAGGAAAAAACTTGAGATATTTTATTCA
CCTTGGTATACTTGGTATACTTATAAAATCTTGTGAAATATATATttaca
aataaatattcaaattcttgaaataaaattttatacaTCGTATTAAATAG
TTCATAAAACTTCAACGCAAAAGTAGAAATATATTTAGAAACAATAAATA
CCAAGATACAAATTGgaaatcatttgaaaatttgttaaCAGTTGACTACC
AAAGACATTCCCTAAAAATTCAGGGGAATACTTGCATGGTGTAAAAATGT
GGGACCATTTGCCAAAGAAATCTGCCGAGAAAAAAACTGTGCAATCTTTA
GTTGTGAGTATGGGCTGGTTAGGCCGCTAAAATCCAAAATCGTGTTCCAC
TTtgtaaacttaaaaaaaaaacggagAACCGTGAATCACGTCATATCACT
AACACGACGACTTTTTCTCCGTTTAGGTATTTTTGCAGAAAGCTTTTTGG
GACTTTTAGTTTTCTTGGCCACCGATTTCCTGTCGTCTTCATCATGAGGT
GTTTCAAAGTCGGTCGTTTTCCCATCTATGTTGGTCATTTTCTTTAACAG
CATTTCTCTCATATAATACTGATCTAGTTGAAAGAAGGCGGAAAACTTTT
GATCTTCCATCGCTTTGCGTTGTAAAAGTTCTTGTTGTTGGTCGAAGCAC
CGAATGCACTTCCCTCTTCCTTTCTTGGTGCTTTTACTTCCATCGTGCTC
CTCTTCAATCTCTTGCACTTTTTCTTGGTAGCGGTGATCACGTACTTCAA
TCGCACCACGGTAAAGGTCCAACAATTTTCCTCCTATGGCTTTCTCTTTG
GAAGAACTTCCTTTGCGCGACAAATATTGTGCATTCTTCTTCTTGTTCAC
TTCAGAGACACGTGACTTCTCATGAAACGTTCGAAAGATGACTTGATTTT
CGTTGAAGATGAAATTTGTTGACTTGGTGACTTCCTGTTGCACAACTTGT
TGAAGGTTTTGTTGAATATGTTGAAACGCTTGGTTGATCATCAAGTGACA
TTTCTCGTGTAAAGCATCCAGCAGAGTATGAGGGAGCTCAAAATCACTTT
CGAGATGTTTCAAAATTGACAAGTTGATCACTTCCGTTCGATTAGACATC
ATATCGAAAGAGGATGAAGGTATACGAAGAAGGAAATTGTGTTTGACGTT
TTGCATTTCCACAAGCGTGTGTTTAATGATAGCGAGAACGACATCAAAAG
AAACCATCCCCATCTTCCCTCGAATCGACGTCTCCAGTTTCGATCGAACA
CCATCCGATAGTGAGGGAAACGATTTAACGAAAGATATGTTCGATGATAG
AACCGCTCGATATCGAGAAGAAACCAACTTGACCAAATAATCGATACAGA
AGTTGGTCAGTTTGGCGGTCCTTTCTCGTCTTGCAAGAAAAGACTTTTCA
CTCGATTTCACAGAATTGCTATAACCATGAATCAACTCTTTTAAAGAATT
TCTCGTCTCACCGACAACTTGTTCAATTTGTTGGTCAGAAAAGCCGCAAT
CATGTTGAAGGGTGTTCAAACATGCTTCTTCCACCTTCTGTATTTCACTT
ATTGTCCTTTGTTGGAGTTCTGTCAAcaagtttttcattttatcaacttg
ctgTACTTTTGATTGGTTCACCGAGACTGCGTGGTTTTCGAGGTGCGATA
TTAGAAGTCCCATCAAAGAGTCGCTGAAGTTCGTCAGCTTTTTAGAAACA
TTGCCAGCGGAGTTCAGTAGTTCGACTTTTAATGTGTTCACGTTCTTCTC
TAACTGCATTTCTAAATGCTGCggattgattttgaaaatttgagttcGTA
TTATTTTATGAAACTCTTTTTGGAAATGTTGAAGAATTTGTATCATGTTC
TGATCAAAGGAGGCGAGCACTTCATTTGTTGTTTTGTTGGCATTATTGAC
AGCGTTTTTAAAGACAAGATACCTTCCTTTGATAGCGAACAAAAGACGTT
CAACGAAAGCGATGGATGAGATGGTTGTCTCTCCATCTTTCACACAACAA
TGGTCTGGTAGAGCCAACAAGAAGATCTTCAAGCAACTCAAAGGATGAGA
AAACAACAAAGAAATCAATTCTTCTAAAACTTTACGCTCTACCGATAACA
TTTGTAAATCTTTGATGAAGTTTTGAAGAACGAGTGTAATCTGTTTGCTG
GCCGAAAAAAGACTTTCAGTTTGTTCACAGTCAAAACTATCAAATTGTTG
TTCATACTTTGCTCTCATTTGCAACGCAAGTTCTTGATGTAAAACGCGTT
GATGTAACAACACATCGATAGTGAAGTTGATCAGCTGTAGAGATCCTAAT
TTCCGTATAATGGCCAACTGGTAGAGTAGTTGTTCGTGTTGCACCAAGTT
GGAGACTACAATAGAATGTTGTTGGTTAGAAAACAATTGAGTGATTACAG
AGGGATGTTGTGGTGAGATGAAAGATTGGGGTAGGTTCAATGAGGAGATC
AACCAACTGACATCCAGATCGATTATTTTGTGATCAGATAATTCGTCTTT
GTGATCCAGAGAAACATGTTCAGCTTCAACATAATTGGTTTGTAGAGTAC
TTGCAATGCTACATGTCTCCCCTTCTTCTACTTCGTTGTCATCTCGCTCG
ATTTCACTATTGTTCCATTCTTCATCGAAAAGTTCTTCACTGTCCGATTC
ACTCccttcattttcttcatcacCAAGGCGAACTGGTAACACTTTTCTGT
TGGCGATCTTTCTCTGTCGTTCGACATCAAGTTGCATGTTGTATGTGATA
TATTTGACCAGCGCCATAACTACCACTACACTCAACAACAACGTCAAAAT
GAACGTCAACACGACATACTTATCCAGGTTATCCGTCACCTCGTTTGAAA
GAATCAAATTCAACGTATAACATGACGATGAAGATGACAtcccattcatt
cattcattcatttcgtttatttattttatttatttttaatcatttaGTTC
CCTGAAACGAAAGAAATGAACTTTTCAATATTCCATGAGTATAATTTTAG
TCTAg Run BLAST on NCBI protein sequence of TCONS_00064389-protein >TCONS_00064389-protein ID=TCONS_00064389-protein|Name=TCONS_00064389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=837bp
MNGMSSSSSCYTLNLILSNEVTDNLDKYVVLTFILTLLLSVVVVMALVKY
ITYNMQLDVERQRKIANRKVLPVRLGDEENEGSESDSEELFDEEWNNSEI
ERDDNEVEEGETCSIASTLQTNYVEAEHVSLDHKDELSDHKIIDLDVSWL
ISSLNLPQSFISPQHPSVITQLFSNQQHSIVVSNLVQHEQLLYQLAIIRK
LGSLQLINFTIDVLLHQRVLHQELALQMRAKYEQQFDSFDCEQTESLFSA
SKQITLVLQNFIKDLQMLSVERKVLEELISLLFSHPLSCLKIFLLALPDH
CCVKDGETTISSIAFVERLLFAIKGRYLVFKNAVNNANKTTNEVLASFDQ
NMIQILQHFQKEFHKIIRTQIFKINPQHLEMQLEKNVNTLKVELLNSAGN
VSKKLTNFSDSLMGLLISHLENHAVSVNQSKVQQVDKMKNLLTELQQRTI
SEIQKVEEACLNTLQHDCGFSDQQIEQVVGETRNSLKELIHGYSNSVKSS
EKSFLARRERTAKLTNFCIDYLVKLVSSRYRAVLSSNISFVKSFPSLSDG
VRSKLETSIRGKMGMVSFDVVLAIIKHTLVEMQNVKHNFLLRIPSSSFDM
MSNRTEVINLSILKHLESDFELPHTLLDALHEKCHLMINQAFQHIQQNLQ
QVVQQEVTKSTNFIFNENQVIFRTFHEKSRVSEVNKKKNAQYLSRKGSSS
KEKAIGGKLLDLYRGAIEVRDHRYQEKVQEIEEEHDGSKSTKKGRGKCIR
CFDQQQELLQRKAMEDQKFSAFFQLDQYYMREMLLKKMTNIDGKTTDFET
PHDEDDRKSVAKKTKSPKKLSAKIPKRRKSRRVSDMT Run BLAST on NCBI transcript from alignment at scaffold_412:87017..90121 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064389 ID=TCONS_00064389|Name=TCONS_00064389|organism=Clytia hemisphaerica|type=transcript|length=3105bp|location=Sequence derived from alignment at scaffold_412:87017..90121 (Clytia hemisphaerica)
cTAGACTAAAATTATACTCATGGAATATTGAAAAGTTCATTTCTTTCGTT
TCAGGGAACtaaatgattaaaaataaataaaataaataaacgaaatgaat
gaatgaatgaatgggaTGTCATCTTCATCGTCATGTTATACGTTGAATTT
GATTCTTTCAAACGAGGTGACGGATAACCTGGATAAGTATGTCGTGTTGA
CGTTCATTTTGACGTTGTTGTTGAGTGTAGTGGTAGTTATGGCGCTGGTC
AAATATATCACATACAACATGCAACTTGATGTCGAACGACAGAGAAAGAT
CGCCAACAGAAAAGTGTTACCAGTTCGCCTTGgtgatgaagaaaatgaag
gGAGTGAATCGGACAGTGAAGAACTTTTCGATGAAGAATGGAACAATAGT
GAAATCGAGCGAGATGACAACGAAGTAGAAGAAGGGGAGACATGTAGCAT
TGCAAGTACTCTACAAACCAATTATGTTGAAGCTGAACATGTTTCTCTGG
ATCACAAAGACGAATTATCTGATCACAAAATAATCGATCTGGATGTCAGT
TGGTTGATCTCCTCATTGAACCTACCCCAATCTTTCATCTCACCACAACA
TCCCTCTGTAATCACTCAATTGTTTTCTAACCAACAACATTCTATTGTAG
TCTCCAACTTGGTGCAACACGAACAACTACTCTACCAGTTGGCCATTATA
CGGAAATTAGGATCTCTACAGCTGATCAACTTCACTATCGATGTGTTGTT
ACATCAACGCGTTTTACATCAAGAACTTGCGTTGCAAATGAGAGCAAAGT
ATGAACAACAATTTGATAGTTTTGACTGTGAACAAACTGAAAGTCTTTTT
TCGGCCAGCAAACAGATTACACTCGTTCTTCAAAACTTCATCAAAGATTT
ACAAATGTTATCGGTAGAGCGTAAAGTTTTAGAAGAATTGATTTCTTTGT
TGTTTTCTCATCCTTTGAGTTGCTTGAAGATCTTCTTGTTGGCTCTACCA
GACCATTGTTGTGTGAAAGATGGAGAGACAACCATCTCATCCATCGCTTT
CGTTGAACGTCTTTTGTTCGCTATCAAAGGAAGGTATCTTGTCTTTAAAA
ACGCTGTCAATAATGCCAACAAAACAACAAATGAAGTGCTCGCCTCCTTT
GATCAGAACATGATACAAATTCTTCAACATTTCCAAAAAGAGTTTCATAA
AATAATACgaactcaaattttcaaaatcaatccGCAGCATTTAGAAATGC
AGTTAGAGAAGAACGTGAACACATTAAAAGTCGAACTACTGAACTCCGCT
GGCAATGTTTCTAAAAAGCTGACGAACTTCAGCGACTCTTTGATGGGACT
TCTAATATCGCACCTCGAAAACCACGCAGTCTCGGTGAACCAATCAAAAG
TAcagcaagttgataaaatgaaaaacttgTTGACAGAACTCCAACAAAGG
ACAATAAGTGAAATACAGAAGGTGGAAGAAGCATGTTTGAACACCCTTCA
ACATGATTGCGGCTTTTCTGACCAACAAATTGAACAAGTTGTCGGTGAGA
CGAGAAATTCTTTAAAAGAGTTGATTCATGGTTATAGCAATTCTGTGAAA
TCGAGTGAAAAGTCTTTTCTTGCAAGACGAGAAAGGACCGCCAAACTGAC
CAACTTCTGTATCGATTATTTGGTCAAGTTGGTTTCTTCTCGATATCGAG
CGGTTCTATCATCGAACATATCTTTCGTTAAATCGTTTCCCTCACTATCG
GATGGTGTTCGATCGAAACTGGAGACGTCGATTCGAGGGAAGATGGGGAT
GGTTTCTTTTGATGTCGTTCTCGCTATCATTAAACACACGCTTGTGGAAA
TGCAAAACGTCAAACACAATTTCCTTCTTCGTATACCTTCATCCTCTTTC
GATATGATGTCTAATCGAACGGAAGTGATCAACTTGTCAATTTTGAAACA
TCTCGAAAGTGATTTTGAGCTCCCTCATACTCTGCTGGATGCTTTACACG
AGAAATGTCACTTGATGATCAACCAAGCGTTTCAACATATTCAACAAAAC
CTTCAACAAGTTGTGCAACAGGAAGTCACCAAGTCAACAAATTTCATCTT
CAACGAAAATCAAGTCATCTTTCGAACGTTTCATGAGAAGTCACGTGTCT
CTGAAGTGAACAAGAAGAAGAATGCACAATATTTGTCGCGCAAAGGAAGT
TCTTCCAAAGAGAAAGCCATAGGAGGAAAATTGTTGGACCTTTACCGTGG
TGCGATTGAAGTACGTGATCACCGCTACCAAGAAAAAGTGCAAGAGATTG
AAGAGGAGCACGATGGAAGTAAAAGCACCAAGAAAGGAAGAGGGAAGTGC
ATTCGGTGCTTCGACCAACAACAAGAACTTTTACAACGCAAAGCGATGGA
AGATCAAAAGTTTTCCGCCTTCTTTCAACTAGATCAGTATTATATGAGAG
AAATGCTGTTAAAGAAAATGACCAACATAGATGGGAAAACGACCGACTTT
GAAACACCTCATGATGAAGACGACAGGAAATCGGTGGCCAAGAAAACTAA
AAGTCCCAAAAAGCTTTCTGCAAAAATACCTAAACGGAGAAAAAGTCGTC
GTGTTAGTGATATGACGTGATTCACGGTTctccgttttttttttaagttt
acaAAGTGGAACACGATTTTGGATTTTAGCGGCCTAACCAGCCCATACTC
ACAACTAAAGATTGCACAGTTTTTTTCTCGGCAGATTTCTTTGGCAAATG
GTCCCACATTTTTACACCATGCAAGTATTCCCCTGAATTTTTAGGGAATG
TCTTTGGTAGTCAACTGttaacaaattttcaaatgatttcCAATTTGTAT
CTTGGTATTTATTGTTTCTAAATATATTTCTACTTTTGCGTTGAAGTTTT
ATGAACTATTTAATACGAtgtataaaattttatttcaagaatttgaatat
ttatttgtaaATATATATTTCACAAGATTTTATAAGTATACCAAGTATAC
CAAGGTGAATAAAATATCTCAAGTTTTTTCCTCAGTAAGCATATTAAGAA
TTAAGAAGAGTTCTACTTTAAAAGTCCTTGATCCTTGATCCAAGACAGAG
CCGTC Coding sequence (CDS) from alignment at scaffold_412:87017..90121 >TCONS_00064389 ID=TCONS_00064389|Name=TCONS_00064389|organism=Clytia hemisphaerica|type=CDS|length=2514bp|location=Sequence derived from alignment at scaffold_412:87017..90121 (Clytia hemisphaerica)
atgaatgggaTGTCATCTTCATCGTCATGTTATACGTTGAATTTGATTCT
TTCAAACGAGGTGACGGATAACCTGGATAAGTATGTCGTGTTGACGTTCA
TTTTGACGTTGTTGTTGAGTGTAGTGGTAGTTATGGCGCTGGTCAAATAT
ATCACATACAACATGCAACTTGATGTCGAACGACAGAGAAAGATCGCCAA
CAGAAAAGTGTTACCAGTTCGCCTTGgtgatgaagaaaatgaaggGAGTG
AATCGGACAGTGAAGAACTTTTCGATGAAGAATGGAACAATAGTGAAATC
GAGCGAGATGACAACGAAGTAGAAGAAGGGGAGACATGTAGCATTGCAAG
TACTCTACAAACCAATTATGTTGAAGCTGAACATGTTTCTCTGGATCACA
AAGACGAATTATCTGATCACAAAATAATCGATCTGGATGTCAGTTGGTTG
ATCTCCTCATTGAACCTACCCCAATCTTTCATCTCACCACAACATCCCTC
TGTAATCACTCAATTGTTTTCTAACCAACAACATTCTATTGTAGTCTCCA
ACTTGGTGCAACACGAACAACTACTCTACCAGTTGGCCATTATACGGAAA
TTAGGATCTCTACAGCTGATCAACTTCACTATCGATGTGTTGTTACATCA
ACGCGTTTTACATCAAGAACTTGCGTTGCAAATGAGAGCAAAGTATGAAC
AACAATTTGATAGTTTTGACTGTGAACAAACTGAAAGTCTTTTTTCGGCC
AGCAAACAGATTACACTCGTTCTTCAAAACTTCATCAAAGATTTACAAAT
GTTATCGGTAGAGCGTAAAGTTTTAGAAGAATTGATTTCTTTGTTGTTTT
CTCATCCTTTGAGTTGCTTGAAGATCTTCTTGTTGGCTCTACCAGACCAT
TGTTGTGTGAAAGATGGAGAGACAACCATCTCATCCATCGCTTTCGTTGA
ACGTCTTTTGTTCGCTATCAAAGGAAGGTATCTTGTCTTTAAAAACGCTG
TCAATAATGCCAACAAAACAACAAATGAAGTGCTCGCCTCCTTTGATCAG
AACATGATACAAATTCTTCAACATTTCCAAAAAGAGTTTCATAAAATAAT
ACgaactcaaattttcaaaatcaatccGCAGCATTTAGAAATGCAGTTAG
AGAAGAACGTGAACACATTAAAAGTCGAACTACTGAACTCCGCTGGCAAT
GTTTCTAAAAAGCTGACGAACTTCAGCGACTCTTTGATGGGACTTCTAAT
ATCGCACCTCGAAAACCACGCAGTCTCGGTGAACCAATCAAAAGTAcagc
aagttgataaaatgaaaaacttgTTGACAGAACTCCAACAAAGGACAATA
AGTGAAATACAGAAGGTGGAAGAAGCATGTTTGAACACCCTTCAACATGA
TTGCGGCTTTTCTGACCAACAAATTGAACAAGTTGTCGGTGAGACGAGAA
ATTCTTTAAAAGAGTTGATTCATGGTTATAGCAATTCTGTGAAATCGAGT
GAAAAGTCTTTTCTTGCAAGACGAGAAAGGACCGCCAAACTGACCAACTT
CTGTATCGATTATTTGGTCAAGTTGGTTTCTTCTCGATATCGAGCGGTTC
TATCATCGAACATATCTTTCGTTAAATCGTTTCCCTCACTATCGGATGGT
GTTCGATCGAAACTGGAGACGTCGATTCGAGGGAAGATGGGGATGGTTTC
TTTTGATGTCGTTCTCGCTATCATTAAACACACGCTTGTGGAAATGCAAA
ACGTCAAACACAATTTCCTTCTTCGTATACCTTCATCCTCTTTCGATATG
ATGTCTAATCGAACGGAAGTGATCAACTTGTCAATTTTGAAACATCTCGA
AAGTGATTTTGAGCTCCCTCATACTCTGCTGGATGCTTTACACGAGAAAT
GTCACTTGATGATCAACCAAGCGTTTCAACATATTCAACAAAACCTTCAA
CAAGTTGTGCAACAGGAAGTCACCAAGTCAACAAATTTCATCTTCAACGA
AAATCAAGTCATCTTTCGAACGTTTCATGAGAAGTCACGTGTCTCTGAAG
TGAACAAGAAGAAGAATGCACAATATTTGTCGCGCAAAGGAAGTTCTTCC
AAAGAGAAAGCCATAGGAGGAAAATTGTTGGACCTTTACCGTGGTGCGAT
TGAAGTACGTGATCACCGCTACCAAGAAAAAGTGCAAGAGATTGAAGAGG
AGCACGATGGAAGTAAAAGCACCAAGAAAGGAAGAGGGAAGTGCATTCGG
TGCTTCGACCAACAACAAGAACTTTTACAACGCAAAGCGATGGAAGATCA
AAAGTTTTCCGCCTTCTTTCAACTAGATCAGTATTATATGAGAGAAATGC
TGTTAAAGAAAATGACCAACATAGATGGGAAAACGACCGACTTTGAAACA
CCTCATGATGAAGACGACAGGAAATCGGTGGCCAAGAAAACTAAAAGTCC
CAAAAAGCTTTCTGCAAAAATACCTAAACGGAGAAAAAGTCGTCGTGTTA
GTGATATGACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064389-exon-scaffold_412-1491911889:87017..90121 | TCONS_00064389-exon-scaffold_412-1491911889:87017..90121 | Clytia hemisphaerica | exon |
| TCONS_00064389-exon-scaffold_412-1510915933:87017..90121 | TCONS_00064389-exon-scaffold_412-1510915933:87017..90121 | Clytia hemisphaerica | exon |
| TCONS_00064389-exon-scaffold_412-1575043694:87017..90121 | TCONS_00064389-exon-scaffold_412-1575043694:87017..90121 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_412 | supercontig | scaffold_412:87017..90121 . |
Blast
The following BLAST results are available for this feature:
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