TCONS_00064378 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064378
Unique NameTCONS_00064378
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064378 ID=TCONS_00064378|Name=TCONS_00064378|organism=Clytia hemisphaerica|type=transcript|length=1399bp
CAGATCTCATTACTTTACGTCTAGAATaatttattagaatttagaacgAT
TTTATTGTTCTacgaaaccaaaacaaaccgtGCTGGAGGGAGAAAGAGcg
ggaaattttccaaaaggtACGAAATTACAGTAGATTTGAGTGAATCGGGC
GAGGTATTGTAATATAAGTTCTCCTCTTATGGTATCTATAATGGCTACTC
AATGCCTGCAACCTACAAATACAGGTTCATCAGGAAGAAGGACAAGAAGT
AGCCGAAATAATTCCATTGATTCTGAACGTTTTACTAGTGTAGACTCGCA
ACAAGTTACTTGTCCTGGCACTCCTTCTGCAGATAATTTTGGCACCAAAG
TAGCAACTTCTACTCCTGCATCCTCTGCTTCTTTAAATGAAAATGTTTGC
AGAAATCAACCTAAACCTCAGGTTAAACGAAAGTTGGACCTGGAGCACAA
AACAATATTACAGCCTCAACCGCAACAACCACAGCCTCAAATCATATATG
CTACATTCAAACCACCAACAAAAGTAACTGCAATCAAGCCAAAGCCAGCA
TCTGGTCCCAATAGAAGATCTCGTCCTCGATCAATGCCCCTACCTATCGC
TCCTGCAGCACCAACAAACACAGGGATGACCATTCAAAAACCATTAGAGC
CAATCACCAACAAACCACCTCTCAAGTCTCCCCATGGTGGTGAAAGGCGA
TACGAAACCTCATTGGGAATTCTTACCAAACGTTTTGTTTCCCTTCTAAG
AAGTTCAACAAATGGTATACTAGACTTGAATAATGCAGCTGAAATATTGG
ATGTTCAAAAAAGACGAATTTATGACATTACCAATGTCTTAGAGGGAATT
GGTGTTATtgaaaagaattctaaaaataatatcaaatggGTGGGAGCAAA
ACATTTGGAGAAAACAGATGAAACCAATAGTCCACAAGAAGAAGCTGTAA
TTGGTGCCAAACTTTTAACTCTCCATCAGGAGATTAGTGATTTAAGATTA
GCAGAATCACGATTAGATGAACTAATAGAGGACTGTCAAGGTGAAATGAA
ACACTGTTCAGCTGCAAAACATGTTAATAAacATTCCTATGTGACGTATC
AAGATATACGTGGAGTTCAAGATTTTAATGACAAAACGGTTATTGCAATA
AAAGCACCTCCTGAAACGAAATTAGAAGTACCCGATCCAGCAGAATCCAT
ACAAATCTGGCTCAAGAGTAACAATGGACCAATTGATGTATACCTTNtca
gcatttcatcgtttaaaaaattgccgttttcggcaataatttccgaaaag
agcaataattgcagtttttatcttaaacacccgactggtaAAGACAGAAA
GATCATCGATGgaaatagttcaaaacaaaaatacacATACCTGGCttct
Run BLAST on NCBI

protein sequence of TCONS_00064378-protein

>TCONS_00064378-protein ID=TCONS_00064378-protein|Name=TCONS_00064378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
MVSIMATQCLQPTNTGSSGRRTRSSRNNSIDSERFTSVDSQQVTCPGTPS
ADNFGTKVATSTPASSASLNENVCRNQPKPQVKRKLDLEHKTILQPQPQQ
PQPQIIYATFKPPTKVTAIKPKPASGPNRRSRPRSMPLPIAPAAPTNTGM
TIQKPLEPITNKPPLKSPHGGERRYETSLGILTKRFVSLLRSSTNGILDL
NNAAEILDVQKRRIYDITNVLEGIGVIEKNSKNNIKWVGAKHLEKTDETN
SPQEEAVIGAKLLTLHQEISDLRLAESRLDELIEDCQGEMKHCSAAKHVN
KHSYVTYQDIRGVQDFNDKTVIAIKAPPETKLEVPDPAESIQIWLKSNNG
PIDVYLXSISSFKKLPFSAIISEKSNNCSFYLKHPTGKDRKIIDGNSSKQ
KYTYLAS
Run BLAST on NCBI

transcript from alignment at scaffold_412:150997..154948+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064378 ID=TCONS_00064378|Name=TCONS_00064378|organism=Clytia hemisphaerica|type=transcript|length=3952bp|location=Sequence derived from alignment at scaffold_412:150997..154948+ (Clytia hemisphaerica)
CAGATCTCATTACTTTACGTCTAGAATaatttattagaatttagaacgAT
TTTATTGTTCTacgaaaccaaaacaaaccgtGCTGGAGGGAGAAAGAGcg
ggaaattttccaaaaggtACGAAATTACAGTAGATTTGAGTGAATCGGGC
GAGGTATTGTAATATAAGTTCTCCTCTTATGGTATCTATAATGGCTACTC
AATGCCTGCAACCTACAAATACAGGTTCATCAGGAAGAAGGACAAGAAGT
AGCCGAAATAATTCCATTGATTCTGAACGTTTTACTAGTGTAGACTCGCA
ACAAGTTACTTGTCCTGGCACTCCTTCTGCAGATAATTTTGGCACCAAAG
TAGCAACTTCTACTCCTGCATCCTCTGCTTCTTTAAATGAAAATGTTTGC
AGAAATCAACCTAAACCTCAGGTAATAAGACACAGTTATCATGGAAGATA
GTTTTAGTTTTAGCTCCTTaatataaattgcttttttgggcagttccaga
aaaaaaaaccatCCTTGTGGACGACActgttttttggaattttttttcac
ttggaaatACTGAGAAATTTTTAAGAAACGTTCTGGAAAATGCAGGATTT
TCCTATTTGGTTATTCATATATATctgaaaatcactaaaattttctattt
tcttgaTTGCTAAAAAATTATCGGAAAATCCAAGAATTttcctgaagttt
ttcaaaagtaaattgttgcAGAAATCCATGTCGTCCACAGGGGGGTGGTA
ACGGAGTATTATTGGAACCACCCATTAGGCCACATATGTAGATGGTCTGT
CACCACGTTCCTTTGCTTTCGATTTCATCATCAATATGGCGGCCACTTTT
TTTATAATGCGATATCTCTGTGTTTATGACTAGGAAGATATAAACACATT
ACATTCGCATACCAttagttggtctaatatcaacatccctcgtctaattc
tgacacccttctatAGAGAAAGGAatataatatgaaagcttgaatcactg
attgaaaaaggattattcctctctgaccactaaagcaaggaaaaacagtt
tcaacctttctataaatttcagctgataaaaagggtgtcggaattagaga
cGGTATACCGTATACCTTTACTACCGgtagtaaattattttgaataataa
ttttatatataaaattatAGTTTTTGAGAAACTTCTACCTGGAAATGCAG
AAGATGCAGGATTATATACATTGTGTAATCTCCCCAAATCAACTAACACA
AAGTCTTTATCTTATAATACTAGGAACCTAATTTTTCATGTACAGGAATT
TCTGCTGTATAATTTATGTTTTACACAAAGCTATTGCGTAAATTGTTCTT
TCTAGAAGGTATTTCAGAGTCATAAATTGTTTTCTGGTTTTCTGCTGCTT
TTATAAAATCAAATGCATGTAatatttaaagaaagaaaatccaGGCTAAA
TTTAGTGCTAATCAAATGTTGCACAGAAATTGTCAGAGATTGAATACTCC
TTTAGGAGATGGTACTACAATTTTGGTTTGACGATTATTCCAGCTCTTTT
TTCTtacaattttgtccatttttatgGTTATGTAAAAATATCTCtagagt
aaacaaaaaaaatcgacTGGAGGAAATGTCTAAGATTCAATTTCCACATG
TGTATCTCATAAGAATTATCTTCGTTTACATTCTTCAATATTTGATCATA
GGTTAAACGAAAGTTGGACCTGGAGCACAAAACAATATTACAGCCTCAAC
CGCAACAACCACAGCCTCAAATCATATATGCTACATTCAAACCACCAACA
AAAGTAACTGCAATCAAGCCAAAGCCAGCATCTGGTCCCAATAGAAGATC
TCGTCCTCGATCAATGCCCCTACCTATCGCTCCTGCAGCACCAACAAACA
CAGGGATGACCATTCAAAAACCATTAGAGCCAATCACCAACAAACCACGT
AAGATATACCAaattacttcgaataaatgcCCCAGATGTATGATCCTCCC
TTAAAGGTACTTGTTTTAAATGAACACCCTTCCTAGAGGATAGGTTGTGC
AAAGGGAGTGTTTAAAAGAAGGGATGgctattcaaagtaatacggtaaAC
CAATTCTGAATTTTTTGTGGTTGGCTTTTATTAAAATGTTTACATGCCTG
ATCCTACATTTTGGAATAAGGTCAATAACTTTTAAGTTTATTGATTAATC
AAATTTTCAACTTACATGCCTGTTTGACCTTTCCAATAAAGGATTTGAAA
GGTTTAGTTGGACAACAGTTACCATCAATTTTCCTGAACCAATTTGGAAT
GAAGGActtttattattgttttctgatatacttttcttctttcttattCA
GCTCTCAAGTCTCCCCATGGTGGTGAAAGGCGATACGAAACCTCATTGGG
AATTCTTACCAAACGTTTTGTTTCCCTTCTAAGAAGTTCAACAAATGGTA
TACTAGACTTGAATAATGCAGCTGAAATATTGGATGTTCAAAAAAGACGA
ATTTATGACATTACCAATGTCTTAGAGGGAATTGGTGTTATtgaaaagaa
ttctaaaaataatatcaaatggGTGTAAgttgttttatattttgtaaaaa
cTTAATAGTAAATTCATGATTGTTATACAGTGTCAACAGTTCTTTTGTCT
TAGATGAAAAGCTTTGCTTTAAACCACTGGTTTTAAATACTTCAACAAct
tcattttccaatttttcaaccTTGACTTCGTGGTATTGTGTTTTTGGTCC
TTGAATTGCAAATAATATAGGAAAATGTTTAGATGTTAAAGTTCTGTGAA
ATTTTTGTAATTCAACAATTTTAATTTAGGGGAGCAAAACATTTGGAGAA
AACAGATGAAACCAATAGTCCACAAGAAGAAGCTGTAATTGGTGCCAAAC
TTTTAACTCTCCATCAGGAGATTAGTGATTTAAGATTAGCAGAATCACGA
TTAGATGAACTAATAGAGGACTGTCAAGGTGAAATGAAACACTGTTCAGC
TGCAAAACATGTTAATAAGTAAGATTTTTGGGTAAATTGTCGAAATTCCC
ATTTTATACAAGTTACAAGTGATATTTTGGAGCTATTTCTTAGCCAAATT
CTTAGCAAACTTgattgtttattttgctgtGTTGATTATAAACTTGTATA
CAGAATCAATTGATATCAATTTTGGTTTTACCTAAAtcttttttatccat
tttcaattttcaatagacATTCCTATGTGACGTATCAAGATATACGTGGA
GTTCAAGATTTTAATGACAAAACGGTTATTGCAATAAAAGCACCTCCTGA
AACGAAATTAGAAGTACCCGATCCAGCAGAAGTAAgcttttataaatatt
ttgacTTGGCTCAAATTAGGCTAGGCAAACCTGGACAAACTCTCAACCGA
GGtagtttttaatgttttgaagtgtgacaaaaataattttgagcCAGACA
ATGTCTGTTGCCCTAAGCGTTATTTTGAGTACTGATTTTAGTATAAGTCA
GTATTTTCAAATTGATCCACTTTGTACATTATATCcttcaaaagttttaa
atcaattagcagggctcgaaataacggtcggacatcggacattgtccaac
ccaaatagcttcatgtccaacccaaaaatcatcataattttcaagctaaa
gcaaccctgatcggacattttgtccgacctacttgaaattgttatttcga
gccttgtCTAGTTATTCCCTAAGAATCAAactttcattcatttttcaGTC
CATACAAATCTGGCTCAAGAGTAACAATGGACCAATTGATGTATACCTTN
tcagcatttcatcgtttaaaaaattgccgttttcggcaataatttccgaa
aagagcaataattgcagtttttatcttaaacacccgactggtaAAGACAG
AAAGATCATCGATGgaaatagttcaaaacaaaaatacacATACCTGGCtt
ct

Coding sequence (CDS) from alignment at scaffold_412:150997..154948+

>TCONS_00064378 ID=TCONS_00064378|Name=TCONS_00064378|organism=Clytia hemisphaerica|type=CDS|length=7326bp|location=Sequence derived from alignment at scaffold_412:150997..154948+ (Clytia hemisphaerica)
ATGGTATCTATAATGGCTACTCAATGCCTGCAACCTACAAATACAGGTTC
ATCAGGAAGAAGGACAAGAAGTAGCCGAAATAATTCCATTGATTCTGAAC
GTTTTACTAGTGTAGACTCGCAACAAGTTACTTGTCCTGGCACTCCTTCT
GCAGATAATTTTGGCACCAAAGTAGCAACTTCTACTCCTGCATCCTCTGC
TTCTTTAAATGAAAATGTTTGCAGAAATCAACCTAAACCTCAGGTTAAAC
GAAAGTTGGACCTGGAGCACAAAACAATATTACAGCCTCAACCGCAACAA
CCACAGCCTCAAATCATATATGCTACATTCAAACCACCAACAAAAGTAAC
TGCAATCAAGCCAAAGCCAGCATCTGGTCCCAATAGAAGATCTCGTCCTC
GATCAATGCCCCTACCTATCGCTCCTGCAGCACCAACAAACACAGGGATG
ACCATTCAAAAACCATTAGAGCCAATCACCAACAAACCACCTCTCAAGTC
TCCCCATGGTGGTGAAAGGCGATACGAAACCTCATTGGGAATTCTTACCA
AACGTTTTGTTTCCCTTCTAAGAAGTTCAACAAATGGTATACTAGACTTG
AATAATGCAGCTGAAATATTGGATGTTCAAAAAAGACGAATTTATGACAT
TACCAATGTCTTAGAGGGAATTGGTGTTATtgaaaagaattctaaaaata
atatcaaatggGTGGGAGCAAAACATTTGGAGAAAACAGATGAAACCAAT
AGTCCACAAGAAGAAGCTGTAATTGGTGCCAAACTTTTAACTCTCCATCA
GGAGATTAGTGATTTAAGATTAGCAGAATCACGATTAGATGAACTAATAG
AGGACTGTCAAGGTGAAATGAAACACTGTTCAGCTGCAAAACATGTTAAT
AAacATTCCTATGTGACGTATCAAGATATACGTGGAGTTCAAGATTTTAA
TGACAAAACGGTTATTGCAATAAAAGCACCTCCTGAAACGAAATTAGAAG
TACCCGATCCAGCAGAATCCATACAAATCTGGCTCAAGAGTAACAATGGA
CCAATTGATGTATACCTTNtcagcatttcatcgtttaaaaaattgccgtt
ttcggcaataatttccgaaaagagcaataattgcagtttttatcttaaac
acccgactggtaAAGACAGAAAGATCATCGATGgaaatagttcaaaacaa
aaatacacATACCTGGCttctATGGTATCTATAATGGCTACTCAATGCCT
GCAACCTACAAATACAGGTTCATCAGGAAGAAGGACAAGAAGTAGCCGAA
ATAATTCCATTGATTCTGAACGTTTTACTAGTGTAGACTCGCAACAAGTT
ACTTGTCCTGGCACTCCTTCTGCAGATAATTTTGGCACCAAAGTAGCAAC
TTCTACTCCTGCATCCTCTGCTTCTTTAAATGAAAATGTTTGCAGAAATC
AACCTAAACCTCAGGTTAAACGAAAGTTGGACCTGGAGCACAAAACAATA
TTACAGCCTCAACCGCAACAACCACAGCCTCAAATCATATATGCTACATT
CAAACCACCAACAAAAGTAACTGCAATCAAGCCAAAGCCAGCATCTGGTC
CCAATAGAAGATCTCGTCCTCGATCAATGCCCCTACCTATCGCTCCTGCA
GCACCAACAAACACAGGGATGACCATTCAAAAACCATTAGAGCCAATCAC
CAACAAACCACCTCTCAAGTCTCCCCATGGTGGTGAAAGGCGATACGAAA
CCTCATTGGGAATTCTTACCAAACGTTTTGTTTCCCTTCTAAGAAGTTCA
ACAAATGGTATACTAGACTTGAATAATGCAGCTGAAATATTGGATGTTCA
AAAAAGACGAATTTATGACATTACCAATGTCTTAGAGGGAATTGGTGTTA
TtgaaaagaattctaaaaataatatcaaatggGTGGGAGCAAAACATTTG
GAGAAAACAGATGAAACCAATAGTCCACAAGAAGAAGCTGTAATTGGTGC
CAAACTTTTAACTCTCCATCAGGAGATTAGTGATTTAAGATTAGCAGAAT
CACGATTAGATGAACTAATAGAGGACTGTCAAGGTGAAATGAAACACTGT
TCAGCTGCAAAACATGTTAATAAacATTCCTATGTGACGTATCAAGATAT
ACGTGGAGTTCAAGATTTTAATGACAAAACGGTTATTGCAATAAAAGCAC
CTCCTGAAACGAAATTAGAAGTACCCGATCCAGCAGAATCCATACAAATC
TGGCTCAAGAGTAACAATGGACCAATTGATGTATACCTTNtcagcatttc
atcgtttaaaaaattgccgttttcggcaataatttccgaaaagagcaata
attgcagtttttatcttaaacacccgactggtaAAGACAGAAAGATCATC
GATGgaaatagttcaaaacaaaaatacacATACCTGGCttctATGGTATC
TATAATGGCTACTCAATGCCTGCAACCTACAAATACAGGTTCATCAGGAA
GAAGGACAAGAAGTAGCCGAAATAATTCCATTGATTCTGAACGTTTTACT
AGTGTAGACTCGCAACAAGTTACTTGTCCTGGCACTCCTTCTGCAGATAA
TTTTGGCACCAAAGTAGCAACTTCTACTCCTGCATCCTCTGCTTCTTTAA
ATGAAAATGTTTGCAGAAATCAACCTAAACCTCAGGTTAAACGAAAGTTG
GACCTGGAGCACAAAACAATATTACAGCCTCAACCGCAACAACCACAGCC
TCAAATCATATATGCTACATTCAAACCACCAACAAAAGTAACTGCAATCA
AGCCAAAGCCAGCATCTGGTCCCAATAGAAGATCTCGTCCTCGATCAATG
CCCCTACCTATCGCTCCTGCAGCACCAACAAACACAGGGATGACCATTCA
AAAACCATTAGAGCCAATCACCAACAAACCACCTCTCAAGTCTCCCCATG
GTGGTGAAAGGCGATACGAAACCTCATTGGGAATTCTTACCAAACGTTTT
GTTTCCCTTCTAAGAAGTTCAACAAATGGTATACTAGACTTGAATAATGC
AGCTGAAATATTGGATGTTCAAAAAAGACGAATTTATGACATTACCAATG
TCTTAGAGGGAATTGGTGTTATtgaaaagaattctaaaaataatatcaaa
tggGTGGGAGCAAAACATTTGGAGAAAACAGATGAAACCAATAGTCCACA
AGAAGAAGCTGTAATTGGTGCCAAACTTTTAACTCTCCATCAGGAGATTA
GTGATTTAAGATTAGCAGAATCACGATTAGATGAACTAATAGAGGACTGT
CAAGGTGAAATGAAACACTGTTCAGCTGCAAAACATGTTAATAAacATTC
CTATGTGACGTATCAAGATATACGTGGAGTTCAAGATTTTAATGACAAAA
CGGTTATTGCAATAAAAGCACCTCCTGAAACGAAATTAGAAGTACCCGAT
CCAGCAGAATCCATACAAATCTGGCTCAAGAGTAACAATGGACCAATTGA
TGTATACCTTNtcagcatttcatcgtttaaaaaattgccgttttcggcaa
taatttccgaaaagagcaataattgcagtttttatcttaaacacccgact
ggtaAAGACAGAAAGATCATCGATGgaaatagttcaaaacaaaaatacac
ATACCTGGCttctATGGTATCTATAATGGCTACTCAATGCCTGCAACCTA
CAAATACAGGTTCATCAGGAAGAAGGACAAGAAGTAGCCGAAATAATTCC
ATTGATTCTGAACGTTTTACTAGTGTAGACTCGCAACAAGTTACTTGTCC
TGGCACTCCTTCTGCAGATAATTTTGGCACCAAAGTAGCAACTTCTACTC
CTGCATCCTCTGCTTCTTTAAATGAAAATGTTTGCAGAAATCAACCTAAA
CCTCAGGTTAAACGAAAGTTGGACCTGGAGCACAAAACAATATTACAGCC
TCAACCGCAACAACCACAGCCTCAAATCATATATGCTACATTCAAACCAC
CAACAAAAGTAACTGCAATCAAGCCAAAGCCAGCATCTGGTCCCAATAGA
AGATCTCGTCCTCGATCAATGCCCCTACCTATCGCTCCTGCAGCACCAAC
AAACACAGGGATGACCATTCAAAAACCATTAGAGCCAATCACCAACAAAC
CACCTCTCAAGTCTCCCCATGGTGGTGAAAGGCGATACGAAACCTCATTG
GGAATTCTTACCAAACGTTTTGTTTCCCTTCTAAGAAGTTCAACAAATGG
TATACTAGACTTGAATAATGCAGCTGAAATATTGGATGTTCAAAAAAGAC
GAATTTATGACATTACCAATGTCTTAGAGGGAATTGGTGTTATtgaaaag
aattctaaaaataatatcaaatggGTGGGAGCAAAACATTTGGAGAAAAC
AGATGAAACCAATAGTCCACAAGAAGAAGCTGTAATTGGTGCCAAACTTT
TAACTCTCCATCAGGAGATTAGTGATTTAAGATTAGCAGAATCACGATTA
GATGAACTAATAGAGGACTGTCAAGGTGAAATGAAACACTGTTCAGCTGC
AAAACATGTTAATAAacATTCCTATGTGACGTATCAAGATATACGTGGAG
TTCAAGATTTTAATGACAAAACGGTTATTGCAATAAAAGCACCTCCTGAA
ACGAAATTAGAAGTACCCGATCCAGCAGAATCCATACAAATCTGGCTCAA
GAGTAACAATGGACCAATTGATGTATACCTTNtcagcatttcatcgttta
aaaaattgccgttttcggcaataatttccgaaaagagcaataattgcagt
ttttatcttaaacacccgactggtaAAGACAGAAAGATCATCGATGgaaa
tagttcaaaacaaaaatacacATACCTGGCttctATGGTATCTATAATGG
CTACTCAATGCCTGCAACCTACAAATACAGGTTCATCAGGAAGAAGGACA
AGAAGTAGCCGAAATAATTCCATTGATTCTGAACGTTTTACTAGTGTAGA
CTCGCAACAAGTTACTTGTCCTGGCACTCCTTCTGCAGATAATTTTGGCA
CCAAAGTAGCAACTTCTACTCCTGCATCCTCTGCTTCTTTAAATGAAAAT
GTTTGCAGAAATCAACCTAAACCTCAGGTTAAACGAAAGTTGGACCTGGA
GCACAAAACAATATTACAGCCTCAACCGCAACAACCACAGCCTCAAATCA
TATATGCTACATTCAAACCACCAACAAAAGTAACTGCAATCAAGCCAAAG
CCAGCATCTGGTCCCAATAGAAGATCTCGTCCTCGATCAATGCCCCTACC
TATCGCTCCTGCAGCACCAACAAACACAGGGATGACCATTCAAAAACCAT
TAGAGCCAATCACCAACAAACCACCTCTCAAGTCTCCCCATGGTGGTGAA
AGGCGATACGAAACCTCATTGGGAATTCTTACCAAACGTTTTGTTTCCCT
TCTAAGAAGTTCAACAAATGGTATACTAGACTTGAATAATGCAGCTGAAA
TATTGGATGTTCAAAAAAGACGAATTTATGACATTACCAATGTCTTAGAG
GGAATTGGTGTTATtgaaaagaattctaaaaataatatcaaatggGTGGG
AGCAAAACATTTGGAGAAAACAGATGAAACCAATAGTCCACAAGAAGAAG
CTGTAATTGGTGCCAAACTTTTAACTCTCCATCAGGAGATTAGTGATTTA
AGATTAGCAGAATCACGATTAGATGAACTAATAGAGGACTGTCAAGGTGA
AATGAAACACTGTTCAGCTGCAAAACATGTTAATAAacATTCCTATGTGA
CGTATCAAGATATACGTGGAGTTCAAGATTTTAATGACAAAACGGTTATT
GCAATAAAAGCACCTCCTGAAACGAAATTAGAAGTACCCGATCCAGCAGA
ATCCATACAAATCTGGCTCAAGAGTAACAATGGACCAATTGATGTATACC
TTNtcagcatttcatcgtttaaaaaattgccgttttcggcaataatttcc
gaaaagagcaataattgcagtttttatcttaaacacccgactggtaAAGA
CAGAAAGATCATCGATGgaaatagttcaaaacaaaaatacacATACCTGG
CttctATGGTATCTATAATGGCTACTCAATGCCTGCAACCTACAAATACA
GGTTCATCAGGAAGAAGGACAAGAAGTAGCCGAAATAATTCCATTGATTC
TGAACGTTTTACTAGTGTAGACTCGCAACAAGTTACTTGTCCTGGCACTC
CTTCTGCAGATAATTTTGGCACCAAAGTAGCAACTTCTACTCCTGCATCC
TCTGCTTCTTTAAATGAAAATGTTTGCAGAAATCAACCTAAACCTCAGGT
TAAACGAAAGTTGGACCTGGAGCACAAAACAATATTACAGCCTCAACCGC
AACAACCACAGCCTCAAATCATATATGCTACATTCAAACCACCAACAAAA
GTAACTGCAATCAAGCCAAAGCCAGCATCTGGTCCCAATAGAAGATCTCG
TCCTCGATCAATGCCCCTACCTATCGCTCCTGCAGCACCAACAAACACAG
GGATGACCATTCAAAAACCATTAGAGCCAATCACCAACAAACCACCTCTC
AAGTCTCCCCATGGTGGTGAAAGGCGATACGAAACCTCATTGGGAATTCT
TACCAAACGTTTTGTTTCCCTTCTAAGAAGTTCAACAAATGGTATACTAG
ACTTGAATAATGCAGCTGAAATATTGGATGTTCAAAAAAGACGAATTTAT
GACATTACCAATGTCTTAGAGGGAATTGGTGTTATtgaaaagaattctaa
aaataatatcaaatggGTGGGAGCAAAACATTTGGAGAAAACAGATGAAA
CCAATAGTCCACAAGAAGAAGCTGTAATTGGTGCCAAACTTTTAACTCTC
CATCAGGAGATTAGTGATTTAAGATTAGCAGAATCACGATTAGATGAACT
AATAGAGGACTGTCAAGGTGAAATGAAACACTGTTCAGCTGCAAAACATG
TTAATAAacATTCCTATGTGACGTATCAAGATATACGTGGAGTTCAAGAT
TTTAATGACAAAACGGTTATTGCAATAAAAGCACCTCCTGAAACGAAATT
AGAAGTACCCGATCCAGCAGAATCCATACAAATCTGGCTCAAGAGTAACA
ATGGACCAATTGATGTATACCTTNtcagcatttcatcgtttaaaaaattg
ccgttttcggcaataatttccgaaaagagcaataattgcagtttttatct
taaacacccgactggtaAAGACAGAAAGATCATCGATGgaaatagttcaa
aacaaaaatacacATACCTGGCttct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040363XLOC_040363Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064378-proteinTCONS_00064378-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064378-exon-scaffold_412-1491911889:150997..151417TCONS_00064378-exon-scaffold_412-1491911889:150997..151417Clytia hemisphaericaexon
TCONS_00064378-exon-scaffold_412-1510915933:150997..151417TCONS_00064378-exon-scaffold_412-1510915933:150997..151417Clytia hemisphaericaexon
TCONS_00064378-exon-scaffold_412-1575043694:150997..151417TCONS_00064378-exon-scaffold_412-1575043694:150997..151417Clytia hemisphaericaexon
TCONS_00064378-exon-scaffold_412-1491911889:152698..152944TCONS_00064378-exon-scaffold_412-1491911889:152698..152944Clytia hemisphaericaexon
TCONS_00064378-exon-scaffold_412-1510915933:152698..152944TCONS_00064378-exon-scaffold_412-1510915933:152698..152944Clytia hemisphaericaexon
TCONS_00064378-exon-scaffold_412-1575043694:152698..152944TCONS_00064378-exon-scaffold_412-1575043694:152698..152944Clytia hemisphaericaexon
TCONS_00064378-exon-scaffold_412-1491911889:153348..153570TCONS_00064378-exon-scaffold_412-1491911889:153348..153570Clytia hemisphaericaexon
TCONS_00064378-exon-scaffold_412-1510915933:153348..153570TCONS_00064378-exon-scaffold_412-1510915933:153348..153570Clytia hemisphaericaexon
TCONS_00064378-exon-scaffold_412-1575043694:153348..153570TCONS_00064378-exon-scaffold_412-1575043694:153348..153570Clytia hemisphaericaexon
TCONS_00064378-exon-scaffold_412-1491911889:153826..154014TCONS_00064378-exon-scaffold_412-1491911889:153826..154014Clytia hemisphaericaexon
TCONS_00064378-exon-scaffold_412-1510915933:153826..154014TCONS_00064378-exon-scaffold_412-1510915933:153826..154014Clytia hemisphaericaexon
TCONS_00064378-exon-scaffold_412-1575043694:153826..154014TCONS_00064378-exon-scaffold_412-1575043694:153826..154014Clytia hemisphaericaexon
TCONS_00064378-exon-scaffold_412-1491911889:154213..154327TCONS_00064378-exon-scaffold_412-1491911889:154213..154327Clytia hemisphaericaexon
TCONS_00064378-exon-scaffold_412-1510915933:154213..154327TCONS_00064378-exon-scaffold_412-1510915933:154213..154327Clytia hemisphaericaexon
TCONS_00064378-exon-scaffold_412-1575043694:154213..154327TCONS_00064378-exon-scaffold_412-1575043694:154213..154327Clytia hemisphaericaexon
TCONS_00064378-exon-scaffold_412-1491911889:154745..154948TCONS_00064378-exon-scaffold_412-1491911889:154745..154948Clytia hemisphaericaexon
TCONS_00064378-exon-scaffold_412-1510915933:154745..154948TCONS_00064378-exon-scaffold_412-1510915933:154745..154948Clytia hemisphaericaexon
TCONS_00064378-exon-scaffold_412-1575043694:154745..154948TCONS_00064378-exon-scaffold_412-1575043694:154745..154948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_412supercontigscaffold_412:150997..154948 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.1763	16.2789	17.1268	19.8484	45.0124	37.5414	17.0383	18.2007	12.2506	17.8051	8.26328	8.25673	6.37159	6.44654	8.27908	11.7103	20.0765	17.227	2.08202	2.7717	10.0518	10.2336	17.1288	17.5906	12.8866	15.9661	3.20769	1.74799	10.8125	13.3013
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003316E2F_WHTH_DNA-bd_dom
IPR011991WHTH_DNA-bd_dom
IPR032198E2F_CC-MB
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0046983protein dimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005667transcription factor complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
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BLAST of TCONS_00064378 vs. Swiss-Prot (Human)
Match: E2F2 (Transcription factor E2F2 OS=Homo sapiens GN=E2F2 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.681e-58
Identity = 111/219 (50.68%), Postives = 142/219 (64.84%), Query Frame = 2 
Query:  593 PIAPAAPTNTGMTIQKPLEPITNKPPLKSPHGGERRYETSLGILTKRFVSLLRSSTNGILDLNNAAEILDVQKRRIYDITNVLEGIGVIEKNSKNNIKWVGAKHLEKTDETNSPQEEAVIGAKLLTLHQEISDLRLAESRLDELIEDCQGEMKHCSAAKHVNKHSYVTYQDIRGVQDFNDKTVIAIKAPPETKLEVPDPAE-SIQIWLKSNNGPIDVYL 1246
            P+ P  PT  G  I+    P    P  KSP G + RY+TSLG+LTK+F+ LL  S +G+LDLN AAE+LDVQKRRIYDITNVLEGI +I K +KNNI+WVG    E        Q+          L QE+ +L   E  LD+LI+ C    KH +  K   + +YVTYQDIR V +F ++TVIA+KAPP+T+LEVPD  E ++QI+LKS  GPI+VYL
Sbjct:   97 PVVPEFPTPKGKCIRVDGLPSPKTP--KSP-GEKTRYDTSLGLLTKKFIYLLSESEDGVLDLNWAAEVLDVQKRRIYDITNVLEGIQLIRKKAKNNIQWVGRGMFEDPTRPGKQQQ----------LGQELKELMNTEQALDQLIQSCSLSFKHLTEDKANKRLAYVTYQDIRAVGNFKEQTVIAVKAPPQTRLEVPDRTEDNLQIYLKSTQGPIEVYL 302
The following BLAST results are available for this feature:
BLAST of TCONS_00064378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
E2F21.681e-5850.68Transcription factor E2F2 OS=Homo sapiens GN=E2F2 ... [more]
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