|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064377 ID=TCONS_00064377|Name=TCONS_00064377|organism=Clytia hemisphaerica|type=transcript|length=3357bpRun BLAST on NCBI protein sequence of TCONS_00064377-protein >TCONS_00064377-protein ID=TCONS_00064377-protein|Name=TCONS_00064377-protein|organism=Clytia hemisphaerica|type=polypeptide|length=782bp MNNQGIWVCSRCTLENSVSELFCQVCDNLSPHAAKLGNEPQPTKSDGGGIRun BLAST on NCBI transcript from alignment at scaffold_412:137412..150276+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064377 ID=TCONS_00064377|Name=TCONS_00064377|organism=Clytia hemisphaerica|type=transcript|length=12865bp|location=Sequence derived from alignment at scaffold_412:137412..150276+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_412:137412..150276+ >TCONS_00064377 ID=TCONS_00064377|Name=TCONS_00064377|organism=Clytia hemisphaerica|type=CDS|length=32886bp|location=Sequence derived from alignment at scaffold_412:137412..150276+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064377 vs. Swiss-Prot (Human)
Match: CAN15 (Calpain-15 OS=Homo sapiens GN=CAPN15 PE=1 SV=1) HSP 1 Score: 568.926 bits (1465), Expect = 0.000e+0 Identity = 296/668 (44.31%), Postives = 411/668 (61.53%), Query Frame = 1
Query: 694 QVATKHSPNLKGKDIDERDSSRPKENPPQISRQKSRQTKIVRKDQITEAHDRWKDIVRFCEDMKMPFVDDSFPPNNASLSF---DGIPQANVKTWLRPKEI--SIITRTKIKWEVFRNPRPSDIIQGIIGNCWFLSALAVVCEKSELLEQILVTKEICDQGAYQVRICKDGKWTIVLLDDLIPCDGLASPIYSQAARNQLWVPLIEKAVAKSFGCYQALVAGRCIEGLQILTGMPCESIVLQNKPGDLPEDAVDIDLVWVKILTCRNAGYLMGASCGGDITDEDLINHYHDVGLEAQHAYSVLDVQQVNEHRLIRLRNPWGRYSWRGAWSDQSEEWNEELRSRLHPHGSVEGVFWISLPDMINYFDSIDVCKYKPEWTEVTLEGQFASPLLHDGQICVLTVLDPTELDITLFQESNRGSKNESIASLDLMIGVYRA-MEMATELKPTSFVIHSNRKLKPSVLCNCFLDPGLYIIIPFAFNHW---------------NSGIECAT--PPKYVLSIHSSNPVLTEHIAMPKYTFSEALYLMVKKLGKKHEGISGVSCYYMSYRLSGLIVAAENRRADVHLHVGCDCSNSFNVVATRGALKTEDCLPPLTRQVLTILTQLEGAEGYAVSHKLRFRITPKNGFD----SFGSHQHPLLTNGLGEVHNPRPL 2616
A H+P L + +R + P + R++S + R+ EA W++IV FC + + FVDDSFPP S+ F D + Q V+ WLRP+EI S+ + W VF RPSDI+QG++GNCWFLSALAV+ E+ +L+E+++VT+ +C +GAYQVR+CKDG WT VL+DD++PCD ++SQA R QLWV LIEKA+AK G Y AL AGR IEGL LTG PCES+ LQ + E+ VD DL+W K+L+ + AG+LMGASCGG D + Y +GL +HAYS+LDV+ V RL+RLRNPWGR+SW G+WSD+ W LR L PHGS EGVFW+ D + YFDS+D+CK +W E ++G F S + LTVL+ L+ LFQE +R S LDL I V+RA L + HS R +K V C+ L+PG Y ++ AFNHW ++G+ A+ PP +VL+++SS V+ E + T ++A+ L+ + G++HEG G++CYY+++ +GLIV ENR +LHV CDC++SFNVV+TRG+L+T+D +PPL RQVL IL+QLEG G++++H+L R + S G+H P LT + +H PRPL
Sbjct: 431 HCAACHTPQLL---VAQRRGAAP------LRRRESMHVEQRRQTDEGEAKALWENIVAFCRENNVSFVDDSFPPGPESVGFPAGDSV-QQRVRQWLRPQEINCSVFRDHRATWSVFHTLRPSDILQGLLGNCWFLSALAVLAERPDLVERVMVTRSLCAEGAYQVRLCKDGTWTTVLVDDMLPCDEAGCLLFSQAQRKQLWVALIEKALAKLHGSYFALQAGRAIEGLATLTGAPCESLALQLSSTNPREEPVDTDLIWAKMLSSKEAGFLMGASCGGGNMKVD-DSAYESLGLRPRHAYSILDVRDVQGTRLLRLRNPWGRFSWNGSWSDEWPHWPGHLRGELMPHGSSEGVFWMEYGDFVRYFDSVDICKVHSDWQEARVQGCFPSSASAPVGVTALTVLERASLEFALFQEGSRRSDAVDSHLLDLCILVFRATFGSGGHLSLGRLLAHSKRAVKKFVSCDVMLEPGEYAVVCCAFNHWGPPLPGTPAPQASSPSAGVPRASPEPPGHVLAVYSSRLVMVEPVEAQPTTLADAIILLTESRGERHEGREGMTCYYLTHGWAGLIVVVENRHPKAYLHVQCDCTDSFNVVSTRGSLRTQDSVPPLHRQVLVILSQLEGNAGFSITHRLAHRKAAQAFLSDWTASKGTHSPP-LTPEVAGLHGPRPL 1086 The following BLAST results are available for this feature:
BLAST of TCONS_00064377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.