TCONS_00064376 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064376
Unique NameTCONS_00064376
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1602

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064376 ID=TCONS_00064376|Name=TCONS_00064376|organism=Clytia hemisphaerica|type=transcript|length=1602bp
AGTAAACCacagattgattgattgattgattgattgattgattgattgat
tgattgattgattgattgattgattgattgattgattgattgattgattg
attgattgattgattgattgattttgaaGGATacaatttttaagcaaaaa
aatggaCTTTCAACAAAGTGATTATGGAGGTGGAAATGATGGTTTTTACA
ACACCAATTATGAACAACAATCATATGGATATGACAACAGCCAACAGACA
CAACCATATGGAGGTTATGATCAATCAGCATACAATCAACCTTACGCTCC
TCCTCCCCAACCTCAAGTTTTTTCTCCAAACTTCTCAGAACCAAAAGCAA
ATGCAAACAACACAGGTGGTGGCTACACAAATTTTGATGATGAGCCTCCT
TTACTTGAAGAACTTGGAATCAATTTTGAACACATTACTTTAACCACTAA
ATCAGTACTGAACCCTTTACATCAAACAGATGCAAGTGTGATGGATGATT
CAGACCTTGCTGGTCCTTTGGTATTTTGTGTGGCTTTTGGTGGCTTTCTC
CTATTGaGTGGGAAAGTTCATGGGTTCGGATACATTTACGGAGTTGGTGT
ATTGGGATGTTTATGTATGTATGCAGTGTTGAACCTGATGAGCATGACCG
GAGTAACATTAACGTGTACCATCAGTGTACTGGGATACTGTTTGTTGCCG
ATGGTCATTTTGTCAGGTCTCTCTGTTGTCTTCACGCTAACGGGTACATT
AGGGACGATATTAACAGGTGTTGTCATATTATGGTGTAGTTTTTCAGCTT
CAAAGCTTTTTGTGACAGTACTTGCTATGGATCACCAACAACCTCTGGTC
GCTTATCCTTGTGCGCTGTTGTATGGTGTGTTCGCTCTACTGACTGTCTT
CTAGTCTACATCATTCCTCGTGGAAAGGTAGAGGAAACTTCTTTGAACAT
TTTTCACGAATTGAAGGAAACTCTACCCACGAAAAGGATGTATTTTTGAT
GAAGAGAATGCAGTTTTAATATCCTACTATCTCTTTTCAAACATTCCACC
CTGCTCATTGGGAGCATAGATATCTTGATTTACGAGGTTGTTCGATATTG
ATCTCACTATGATTATAATATGAAATGACGCATCGCTGCCTAATGAAAAG
TGCAATGTCATGGTTGTTTTGtagaaaaatgttgttcttttctGTTGCGT
TACATCATAATTAGCTGTCTTTAATGATATAATTGAAATATTCTTGCAAG
CTTGATAAATTTGTGAAGATTTCCTGCTTTCTTCACCACATGTTTCTCGC
TCGCATTTGTCCCATCTCCCCTTTTGTTTGGTGATCAATTTCGAAGAAAT
ATTCAAATCTCTATTTAATTGAATAAGATAAGTCATATCTCGATTATCTA
TATCGTGCGAAAAAATTACTGCAAAATTTATGCATTTTGTTCTTCGTTAC
TATCGAGCTTTCCTAACCTTTGCTTGGtatttttttagtgtttttgacAT
GCATCGACTTTCTGTTCTTTCTGCTTTATATAATAAGATTTATTCGAAAA
ttgtatttatatttttagTTGAGAATTTTACAATAAATATACGATCCAAA
AT
Run BLAST on NCBI

protein sequence of TCONS_00064376-protein

>TCONS_00064376-protein ID=TCONS_00064376-protein|Name=TCONS_00064376-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MDFQQSDYGGGNDGFYNTNYEQQSYGYDNSQQTQPYGGYDQSAYNQPYAP
PPQPQVFSPNFSEPKANANNTGGGYTNFDDEPPLLEELGINFEHITLTTK
SVLNPLHQTDASVMDDSDLAGPLVFCVAFGGFLLLSGKVHGFGYIYGVGV
LGCLCMYAVLNLMSMTGVTLTCTISVLGYCLLPMVILSGLSVVFTLTGTL
GTILTGVVILWCSFSASKLFVTVLAMDHQQPLVAYPCALLYGVFALLTVF
Run BLAST on NCBI

transcript from alignment at scaffold_412:125047..127308+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064376 ID=TCONS_00064376|Name=TCONS_00064376|organism=Clytia hemisphaerica|type=transcript|length=2262bp|location=Sequence derived from alignment at scaffold_412:125047..127308+ (Clytia hemisphaerica)
AGTAAACCacagattgattgattgattgattgattgattgattgattgat
tgattgattgattgattgattgattgattgattgattgattgattgattg
attgattgattgattgattgattttgaaGGATacaatttttaagcaaaaa
aatggaCTTTCAACAAAGTGATTATGGAGGTGGAAATGATGGTTTTTACA
ACACCAATTATGAACAACAATCATATGGATATGACAACAGCCAACAGACA
CAACCATATGGAGGTTATGATCAATCAGCATACAATCAACCTTACGCTCC
TCCTCCCCAACCTCAAGTTTTTTCTCCAAACTTCTCAGAACCAAAAGCAA
ATGCAAACAACACAGGTGGTGGCTACACAAATTTTGATGATGAGCCTCCT
TTACTTGAAGGTAACCATTTCAAATAGAATTTTGAAACACATTTTAACAT
AGTTTCATCTAGTTTGATGACATAAAATCTGGATTTTAAGTCTGTATTAG
CAAAATAACCAGCTTATAAATTTCAATTCATGCCTCATTTTTTTTAGAAC
TTGGAATCAATTTTGAACACATTACTTTAACCGTAAgttctttctttctt
tgattttgtttcACCGACGAAAATTTATGCTCATTAGATATGATAATTGT
TTGGAACTTTGCTTGacgtatttttattttcttcacaGACTAAATCAGTA
CTGAACCCTTTACATCAAACAGATGCAAGTGTGATGGATGATTCAGACCT
TGCTGGTCCTTTGGTATTTTGTGTGGCTTTTGGTGGCTTTCTCCTATTGG
TAATAAATTATATTGTTTCTTtcaagaaccagtaaattctgACCTAATTT
TTATCTTATCATTGTCTTGTTAAagtttttaagtcaaaagtAAAGCAACG
ACTAACCTATTAGGAAAAGATCAACTCACTTCAAACACGACGGTTTTATT
AGAAGTCCAActtaataaaaaatgaaagtgttttcttttactttttcaga
GTGGGAAAGTTCATGGGTTCGGATACATTTACGGAGTTGGTGTATTGGGA
TGTTTATGTATGTATGCAGTGTTGAACCTGATGAGCATGACCGGAGTAAC
ATTAACGTGTACCATCAGTGTACTGGGATACTGTTTGTTGCCGATGGTCA
TTTTGTCAGGTCTCTCTGTTGTCTTCACGCTAACGTAAGTTAGAGATCTT
TCATACAAGTATTCTTACACTATCGGTAAAGTACATTTCTCTTTTATTCA
TATTTACATATCAAAGCTATTTTTCCCAGAATTCACCACATAATAAGAGC
TCTTAAGGCAGTCTCGATAAATCATCTTTATGGCGTCATATTTGCATTCA
TATTAATTCtcttttattcaaatctttttctttttctttcctcACTTTCA
GGGGTACATTAGGGACGATATTAACAGGTGTTGTCATATTATGGTGTAGT
TTTTCAGCTTCAAAGCTTTTTGTGACAGTACTTGCTATGGATCACCAACA
ACCTCTGGTCGCTTATCCTTGTGCGCTGTTGTATGGTGTGTTCGCTCTAC
TGACTGTCTTCTAGTCTACATCATTCCTCGTGGAAAGGTAGAGGAAACTT
CTTTGAACATTTTTCACGAATTGAAGGAAACTCTACCCACGAAAAGGATG
TATTTTTGATGAAGAGAATGCAGTTTTAATATCCTACTATCTCTTTTCAA
ACATTCCACCCTGCTCATTGGGAGCATAGATATCTTGATTTACGAGGTTG
TTCGATATTGATCTCACTATGATTATAATATGAAATGACGCATCGCTGCC
TAATGAAAAGTGCAATGTCATGGTTGTTTTGtagaaaaatgttgttcttt
tctGTTGCGTTACATCATAATTAGCTGTCTTTAATGATATAATTGAAATA
TTCTTGCAAGCTTGATAAATTTGTGAAGATTTCCTGCTTTCTTCACCACA
TGTTTCTCGCTCGCATTTGTCCCATCTCCCCTTTTGTTTGGTGATCAATT
TCGAAGAAATATTCAAATCTCTATTTAATTGAATAAGATAAGTCATATCT
CGATTATCTATATCGTGCGAAAAAATTACTGCAAAATTTATGCATTTTGT
TCTTCGTTACTATCGAGCTTTCCTAACCTTTGCTTGGtatttttttagtg
tttttgacATGCATCGACTTTCTGTTCTTTCTGCTTTATATAATAAGATT
TATTCGAAAAttgtatttatatttttagTTGAGAATTTTACAATAAATAT
ACGATCCAAAAT

Coding sequence (CDS) from alignment at scaffold_412:125047..127308+

>TCONS_00064376 ID=TCONS_00064376|Name=TCONS_00064376|organism=Clytia hemisphaerica|type=CDS|length=3765bp|location=Sequence derived from alignment at scaffold_412:125047..127308+ (Clytia hemisphaerica)
atggaCTTTCAACAAAGTGATTATGGAGGTGGAAATGATGGTTTTTACAA
CACCAATTATGAACAACAATCATATGGATATGACAACAGCCAACAGACAC
AACCATATGGAGGTTATGATCAATCAGCATACAATCAACCTTACGCTCCT
CCTCCCCAACCTCAAGTTTTTTCTCCAAACTTCTCAGAACCAAAAGCAAA
TGCAAACAACACAGGTGGTGGCTACACAAATTTTGATGATGAGCCTCCTT
TACTTGAAGAACTTGGAATCAATTTTGAACACATTACTTTAACCACTAAA
TCAGTACTGAACCCTTTACATCAAACAGATGCAAGTGTGATGGATGATTC
AGACCTTGCTGGTCCTTTGGTATTTTGTGTGGCTTTTGGTGGCTTTCTCC
TATTGaGTGGGAAAGTTCATGGGTTCGGATACATTTACGGAGTTGGTGTA
TTGGGATGTTTATGTATGTATGCAGTGTTGAACCTGATGAGCATGACCGG
AGTAACATTAACGTGTACCATCAGTGTACTGGGATACTGTTTGTTGCCGA
TGGTCATTTTGTCAGGTCTCTCTGTTGTCTTCACGCTAACGGGTACATTA
GGGACGATATTAACAGGTGTTGTCATATTATGGTGTAGTTTTTCAGCTTC
AAAGCTTTTTGTGACAGTACTTGCTATGGATCACCAACAACCTCTGGTCG
CTTATCCTTGTGCGCTGTTGTATGGTGTGTTCGCTCTACTGACTGTCTTC
TAGatggaCTTTCAACAAAGTGATTATGGAGGTGGAAATGATGGTTTTTA
CAACACCAATTATGAACAACAATCATATGGATATGACAACAGCCAACAGA
CACAACCATATGGAGGTTATGATCAATCAGCATACAATCAACCTTACGCT
CCTCCTCCCCAACCTCAAGTTTTTTCTCCAAACTTCTCAGAACCAAAAGC
AAATGCAAACAACACAGGTGGTGGCTACACAAATTTTGATGATGAGCCTC
CTTTACTTGAAGAACTTGGAATCAATTTTGAACACATTACTTTAACCACT
AAATCAGTACTGAACCCTTTACATCAAACAGATGCAAGTGTGATGGATGA
TTCAGACCTTGCTGGTCCTTTGGTATTTTGTGTGGCTTTTGGTGGCTTTC
TCCTATTGaGTGGGAAAGTTCATGGGTTCGGATACATTTACGGAGTTGGT
GTATTGGGATGTTTATGTATGTATGCAGTGTTGAACCTGATGAGCATGAC
CGGAGTAACATTAACGTGTACCATCAGTGTACTGGGATACTGTTTGTTGC
CGATGGTCATTTTGTCAGGTCTCTCTGTTGTCTTCACGCTAACGGGTACA
TTAGGGACGATATTAACAGGTGTTGTCATATTATGGTGTAGTTTTTCAGC
TTCAAAGCTTTTTGTGACAGTACTTGCTATGGATCACCAACAACCTCTGG
TCGCTTATCCTTGTGCGCTGTTGTATGGTGTGTTCGCTCTACTGACTGTC
TTCTAGatggaCTTTCAACAAAGTGATTATGGAGGTGGAAATGATGGTTT
TTACAACACCAATTATGAACAACAATCATATGGATATGACAACAGCCAAC
AGACACAACCATATGGAGGTTATGATCAATCAGCATACAATCAACCTTAC
GCTCCTCCTCCCCAACCTCAAGTTTTTTCTCCAAACTTCTCAGAACCAAA
AGCAAATGCAAACAACACAGGTGGTGGCTACACAAATTTTGATGATGAGC
CTCCTTTACTTGAAGAACTTGGAATCAATTTTGAACACATTACTTTAACC
ACTAAATCAGTACTGAACCCTTTACATCAAACAGATGCAAGTGTGATGGA
TGATTCAGACCTTGCTGGTCCTTTGGTATTTTGTGTGGCTTTTGGTGGCT
TTCTCCTATTGaGTGGGAAAGTTCATGGGTTCGGATACATTTACGGAGTT
GGTGTATTGGGATGTTTATGTATGTATGCAGTGTTGAACCTGATGAGCAT
GACCGGAGTAACATTAACGTGTACCATCAGTGTACTGGGATACTGTTTGT
TGCCGATGGTCATTTTGTCAGGTCTCTCTGTTGTCTTCACGCTAACGGGT
ACATTAGGGACGATATTAACAGGTGTTGTCATATTATGGTGTAGTTTTTC
AGCTTCAAAGCTTTTTGTGACAGTACTTGCTATGGATCACCAACAACCTC
TGGTCGCTTATCCTTGTGCGCTGTTGTATGGTGTGTTCGCTCTACTGACT
GTCTTCTAGatggaCTTTCAACAAAGTGATTATGGAGGTGGAAATGATGG
TTTTTACAACACCAATTATGAACAACAATCATATGGATATGACAACAGCC
AACAGACACAACCATATGGAGGTTATGATCAATCAGCATACAATCAACCT
TACGCTCCTCCTCCCCAACCTCAAGTTTTTTCTCCAAACTTCTCAGAACC
AAAAGCAAATGCAAACAACACAGGTGGTGGCTACACAAATTTTGATGATG
AGCCTCCTTTACTTGAAGAACTTGGAATCAATTTTGAACACATTACTTTA
ACCACTAAATCAGTACTGAACCCTTTACATCAAACAGATGCAAGTGTGAT
GGATGATTCAGACCTTGCTGGTCCTTTGGTATTTTGTGTGGCTTTTGGTG
GCTTTCTCCTATTGaGTGGGAAAGTTCATGGGTTCGGATACATTTACGGA
GTTGGTGTATTGGGATGTTTATGTATGTATGCAGTGTTGAACCTGATGAG
CATGACCGGAGTAACATTAACGTGTACCATCAGTGTACTGGGATACTGTT
TGTTGCCGATGGTCATTTTGTCAGGTCTCTCTGTTGTCTTCACGCTAACG
GGTACATTAGGGACGATATTAACAGGTGTTGTCATATTATGGTGTAGTTT
TTCAGCTTCAAAGCTTTTTGTGACAGTACTTGCTATGGATCACCAACAAC
CTCTGGTCGCTTATCCTTGTGCGCTGTTGTATGGTGTGTTCGCTCTACTG
ACTGTCTTCTAGatggaCTTTCAACAAAGTGATTATGGAGGTGGAAATGA
TGGTTTTTACAACACCAATTATGAACAACAATCATATGGATATGACAACA
GCCAACAGACACAACCATATGGAGGTTATGATCAATCAGCATACAATCAA
CCTTACGCTCCTCCTCCCCAACCTCAAGTTTTTTCTCCAAACTTCTCAGA
ACCAAAAGCAAATGCAAACAACACAGGTGGTGGCTACACAAATTTTGATG
ATGAGCCTCCTTTACTTGAAGAACTTGGAATCAATTTTGAACACATTACT
TTAACCACTAAATCAGTACTGAACCCTTTACATCAAACAGATGCAAGTGT
GATGGATGATTCAGACCTTGCTGGTCCTTTGGTATTTTGTGTGGCTTTTG
GTGGCTTTCTCCTATTGaGTGGGAAAGTTCATGGGTTCGGATACATTTAC
GGAGTTGGTGTATTGGGATGTTTATGTATGTATGCAGTGTTGAACCTGAT
GAGCATGACCGGAGTAACATTAACGTGTACCATCAGTGTACTGGGATACT
GTTTGTTGCCGATGGTCATTTTGTCAGGTCTCTCTGTTGTCTTCACGCTA
ACGGGTACATTAGGGACGATATTAACAGGTGTTGTCATATTATGGTGTAG
TTTTTCAGCTTCAAAGCTTTTTGTGACAGTACTTGCTATGGATCACCAAC
AACCTCTGGTCGCTTATCCTTGTGCGCTGTTGTATGGTGTGTTCGCTCTA
CTGACTGTCTTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040361XLOC_040361Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064376-exon-scaffold_412-1491911889:125047..125456TCONS_00064376-exon-scaffold_412-1491911889:125047..125456Clytia hemisphaericaexon
TCONS_00064376-exon-scaffold_412-1510915933:125047..125456TCONS_00064376-exon-scaffold_412-1510915933:125047..125456Clytia hemisphaericaexon
TCONS_00064376-exon-scaffold_412-1575043694:125047..125456TCONS_00064376-exon-scaffold_412-1575043694:125047..125456Clytia hemisphaericaexon
TCONS_00064376-exon-scaffold_412-1491911889:125594..125628TCONS_00064376-exon-scaffold_412-1491911889:125594..125628Clytia hemisphaericaexon
TCONS_00064376-exon-scaffold_412-1510915933:125594..125628TCONS_00064376-exon-scaffold_412-1510915933:125594..125628Clytia hemisphaericaexon
TCONS_00064376-exon-scaffold_412-1575043694:125594..125628TCONS_00064376-exon-scaffold_412-1575043694:125594..125628Clytia hemisphaericaexon
TCONS_00064376-exon-scaffold_412-1491911889:125735..125845TCONS_00064376-exon-scaffold_412-1491911889:125735..125845Clytia hemisphaericaexon
TCONS_00064376-exon-scaffold_412-1510915933:125735..125845TCONS_00064376-exon-scaffold_412-1510915933:125735..125845Clytia hemisphaericaexon
TCONS_00064376-exon-scaffold_412-1575043694:125735..125845TCONS_00064376-exon-scaffold_412-1575043694:125735..125845Clytia hemisphaericaexon
TCONS_00064376-exon-scaffold_412-1491911889:126046..126230TCONS_00064376-exon-scaffold_412-1491911889:126046..126230Clytia hemisphaericaexon
TCONS_00064376-exon-scaffold_412-1510915933:126046..126230TCONS_00064376-exon-scaffold_412-1510915933:126046..126230Clytia hemisphaericaexon
TCONS_00064376-exon-scaffold_412-1575043694:126046..126230TCONS_00064376-exon-scaffold_412-1575043694:126046..126230Clytia hemisphaericaexon
TCONS_00064376-exon-scaffold_412-1491911889:126448..127308TCONS_00064376-exon-scaffold_412-1491911889:126448..127308Clytia hemisphaericaexon
TCONS_00064376-exon-scaffold_412-1510915933:126448..127308TCONS_00064376-exon-scaffold_412-1510915933:126448..127308Clytia hemisphaericaexon
TCONS_00064376-exon-scaffold_412-1575043694:126448..127308TCONS_00064376-exon-scaffold_412-1575043694:126448..127308Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064376-proteinTCONS_00064376-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_412supercontigscaffold_412:125047..127308 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
50.334	44.9784	43.7643	44.0822	21.2601	16.9085	44.4072	42.6431	38.0376	35.7078	32.8504	30.6722	26.8586	28.3405	27.4972	28.5036	38.6616	34.774	21.1237	23.6897	27.3311	27.605	40.8163	39.9878	34.1806	35.0132	21.6323	15.3242	34.5126	30.8716
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006977Yip1
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
[Close]
BLAST of TCONS_00064376 vs. Swiss-Prot (Human)
Match: YIPF5 (Protein YIPF5 OS=Homo sapiens GN=YIPF5 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.557e-62
Identity = 111/173 (64.16%), Postives = 142/173 (82.08%), Query Frame = 2 
Query:  383 FDDEPPLLEELGINFEHITLTTKSVLNPLHQTDASVMDDSDLAGPLVFCVAFGGFLLLSGKVHGFGYIYGVGVLGCLCMYAVLNLMSMTGVTLTCTISVLGYCLLPMVILSXXXXXXXXXXXXXXXXXXXXXXWCSFSASKLFVTVLAMDHQQPLVAYPCALLYGVFALLTVF 901
            F+DEPPLLEELGINF+HI   T +VL+PL   D S+M+++DLAGP+VFC+AFG  LLL+GK+  FGY+YG+  +GCL M+ +LNLMSMTGV+  C  SVLGYCLLPM++LS  +V+F+L G +G ILT  +I WCSFSASK+F++ LAM+ QQ LVAYPCALLYGVFAL++VF
Sbjct:   86 FEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQ-FGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVFALISVF 257
The following BLAST results are available for this feature:
BLAST of TCONS_00064376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
YIPF51.557e-6264.16Protein YIPF5 OS=Homo sapiens GN=YIPF5 PE=1 SV=1[more]
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