TCONS_00064375 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064375
Unique NameTCONS_00064375
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1031

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064375 ID=TCONS_00064375|Name=TCONS_00064375|organism=Clytia hemisphaerica|type=transcript|length=1031bp
CGAGAGATTGTGATGAAAGTTCATCAAATATTGaacactttttcaaactt
ttgatttcaaaatgaaattgttttaatAAACGATCAGTATGAATTCTGTG
TTTGTAATTCGAGAAAGTTGGAAAAAATTGCTTTCATTAAGTGTTTGTTG
GACCTGAGAAATATAAAGTTCTTTTTGGGAGAGATGAAGTCTAGTGTTAG
TATTTGGTCGCTGAATGAGATGAGCTGTCGAGCGTGTGGGAGTGTTCCAT
TGCGTGATCACCTCACTACACCTGTCAATCCTCGCGTTGCCAGGGGTTTC
GGCAAACTCTCCTCTTCTGGTATTACAACGCGCGTGCAATACAATGACCT
TTCCAACATCCATATCTCGCCCTTCAAAGACACAGGAAGGAGCAGCTTTG
AACGATCATCCACAACTCACTCAACACAAAATGGAATCCAAAATCTCGCT
TCTCATCTAAgCACGAAATCGATCTTGGTCCCATCAACCACCACTACACC
TCTCCCGAAACACATCTCCGACAAACCACCATCTTGCATGATGACGTCAC
AGCTCTTGAAATGCGATCCTCGACAACTGCTTGTGACAGGGTATCGTTCT
GATGTCTTCACTTCCAGACCTTTTCTACCGGCgacgaaaagtttgaaaac
aacAACAGCGACCGCTTCTTCGTCTTACCATGGCAATAAGCAAACAACCC
CAAAAACTCATCACAGCTTCAGGTGGAAAACCAAACCATCAAATACTGCA
CGAGTGAACAATTACCCAGACCCCATGTATAGTGCAGACTCAGCATTTTT
ACAGCGTGTGACGGAAATGGCCAGTTTGGAGGTGGAAACTGTCAAAACTG
AAAAGTGGAAGAAAATGCGACGAAAATAATAACTAAGAACAAACTGGTTT
TTGAGATATTCGAGTTTGAACTCGATgctatttttctaaatattataaat
ttctagatgtatattttgtataaaagAATTTATGTtggtaaaaaagaatt
tttatgtTGGTAAAAATGCAGAACGAAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00064375-protein

>TCONS_00064375-protein ID=TCONS_00064375-protein|Name=TCONS_00064375-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MKSSVSIWSLNEMSCRACGSVPLRDHLTTPVNPRVARGFGKLSSSGITTR
VQYNDLSNIHISPFKDTGRSSFERSSTTHSTQNGIQNLASHLSTKSILVP
STTTTPLPKHISDKPPSCMMTSQLLKCDPRQLLVTGYRSDVFTSRPFLPA
TKSLKTTTATASSSYHGNKQTTPKTHHSFRWKTKPSNTARVNNYPDPMYS
ADSAFLQRVTEMASLEVETVKTEKWKKMRRK
Run BLAST on NCBI

transcript from alignment at scaffold_412:94265..97778+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064375 ID=TCONS_00064375|Name=TCONS_00064375|organism=Clytia hemisphaerica|type=transcript|length=3514bp|location=Sequence derived from alignment at scaffold_412:94265..97778+ (Clytia hemisphaerica)
CGAGAGATTGTGATGAAAGTTCATCAAATATTGaacactttttcaaactt
ttgatttcaaaatgaaattgttttaatAAACGATCAGTATGAATTCTGTG
TTTGTAATTCGAGAAAGTTGGAAAAAATTGCTTTCATTAAGTGTTTGTTG
GACCTGAGAAATATAAAGTTCTTTTTGGGAGAGATGAAGTCTAGTGTTAG
TATTTGGTCGCTGAATGAGATGAGCTGTCGAGCGTGTGGGAGTGTTCCAT
TGCGTGATCACCTCACTACACCTGTCAATCCTCGCGTTGCCAGGGGTTTC
GGCAAACTCTCCTCTTCTGGTATTACAACGCGCGTGCAATACAATGACCT
TTCCAACATCCATATCTCGCCCTTCAAAGGTCCTATATATGACCTTATTT
TAattgtatttttcaattttaaagcaTCATGATTATCAATCAATAAGCCA
TGCCAACatatataaatttttaaaaagatcattttgatAATGGTCATGGT
ACAGAATCGCAAAAATGGttatcaaattcataaaaaagcGAATCCTTGGG
GACTAGGTACGAGGTTTAACAATCTTTCAGGTGTAGTTAACAACCAACAT
CCTTGTACAAAATCTTTCCTGTGAACTTACAGAAACATTCTTTTCTTCTA
GACACAGGAAGGAGCAGCTTTGAACGATCATCCACAACTCACTCAACACA
AAATGGAATCCAAAATCTCGCTTCTCATCTAAggttttttttcacacaaa
ttTTAAACCGTCCTCTTTCTTCGGGCGGGAAGAAGTTTTGGCCAATTCGc
caatttttgtacaatttggacgaattaagaaaaatttaagtttgGCGTCG
CGATGAATGATTTTGTAATGACTGGGCTAATTAAGGGTGTTGTCAGGAAA
AATGAAACCAAAGTATTAAAACCTTTCAATGCCGGCAAAAATCCTGATAT
CCAatttaaagctgaaaattagaattttggGATCATCCATTTTATCCCTA
ATGATTAAAAATAGATTTATTGAAGACAGGTGTTTTAAAGCTCTTACATA
CTTTCCTTCTTTTCAGCACGAAATCGATCTTGGTCCCATCAACCACCACT
ACACCTCTCCCGAAACACATCTCCGACAAACCACCATCTTGCATGATGAC
GTCACAGCTCTTGAAATGCGATCCTCGACAACTGCTTGTGACAGGGTATC
GTTCTGATGTCTTCACTTCCAGACCTTTTCTACCGGCgacgaaaagtttg
aaaacaacAACAGCGACCGCTTCTTCGTCTTACCATGGCAATAAGCAAAC
AACCCCAAAAACTCATCACAGCTTCAGGTACCTAAATTGAGTTAGATTTA
ATTCATAGTTTCATACTTTCACACCTAACACTTTGATCTACTTTAATAGG
ATGAATTTTCGCGgcaacttaatttcgcggatgacattATCAGGGGACAG
taattttgtgtcttttttacTGTCAAATTATACAtatggttgttgaaata
cgtattattagcgcttctttgatgtcaGTTAACATTTTAAAGTAGTTATC
cgacattttttgagttttgttcaaAAACATTTCGCCGATAAGACTATtcc
aaatttccagtttttgtAAGAATAAAGGTCTAACACTGTAAAGGTCTAAC
ATTTCTCTGCTCTCTTTAAAGGTGGAAAACCAAACCATCAAATACTGCAC
GAGGTATTTTTTATCCTTCTCAAAAGCTTTATCTGTAGTTTGGGGTTCAG
TTATTCACTCAACACTCGGAATAAGTACTTGGCACCCTGAACTGCAATCG
TCTCACCTCCCCGGTGGGAGGAGGGGGCACTCGActcaaaattaggcctt
tgaaatagaacccttacagtgcagagataatttatgtaaatttgagtaaa
tttgaacaaaaaatcgAGCATTCCAGcgtatttttttgaaacctttggag
catttttaggcaaaaatttTCAGTGATCGAAATAGCGGTGGGTTATCGGT
TGAAaccaacaagaaaaaaaatcaccgacccgaaaattttcggaaaatgt
GAAAATAACCGACCAATATTTGTGTGAGCTAAACTAATCTTGATGATCAG
TTATTCATGGAATATCTACTTTATGACTAGTTCCTTAGTTGTAACTTTCT
TCTCTTATTTCTTGGTTACTTCAAACTCTAttacacctccttctcacaga
cccggtaggattttttcaaccagtggggataaaaataacggaccaaattc
gatggggattgatatttccatagtttttatggctggggatttcaattctt
ttgttttcaagtcaaagaATTCAGTAGGGATGGGAAAAATAGCATAATAT
TTTGCAGTGAGGATTGGTTTATTTGATTTTTTTCATTGGGGAGAGAAATT
GGAAGATAATTTTCCACCGGGGACGATATTTAGGCCAATTTTTCCAGTGG
GAAGGGTTCCCAGTGGGTCTGTGAGAAGGGGGTGTTCTATTGACTTTCTC
CTCTAATTTCTTCGTTACTTCGAATTCTATTCCTTCGTGACTTTCTCCTC
TAATTTCTTCGTTACTTCGAGCACTATTCCTTGCTAACTTTCCAATGCTT
CAGTCTTAAaaagtttggtatcgttggGAAGGTAGGAAGGAGCTTATTAC
CAAACGTTTTAAAAGTTGAAGCATTGGCTGAGAAATAAACAAGCATAGTA
AAATTTAGTGCACatttatcgtgaatagactttcaTTTCTTCGATACTTT
AAACCCTATAAAACTTTCTTCTTTAATTACTTCTTTTTATCTGGACTTAA
TTTAGCTTTTTATTACTGATGTCAgtttgttttctgttttctgttaAGTT
GAGAGATTTATATGAACTAATTGACATGAAAATAAGGCTAAGGGTTAAAA
CAAGTGTTTAAAAGCCAGCAAAAAAGACAAATTTTCGAAGTGTATATTAA
ATAACCGATCAGAAGGAAAACCTTATTTCGACCACTGCAAAATATGGttg
gattttacaaattttacacccttagagtgcatttttctcatctttgctca
tttcgacaCTCACATTActctttgggaagcttggaaaaggaACCCTTAAG
GACCGTAAGTACGGTCGGTTGTTTATCTTGAGTGCCCCCCTCCCCGGTCT
CACCTCCCTTGAGAAGTTGATTTCTGAAAATAACCACCCATCTTATGTTT
GATTAGTTGAGGATGTTTAAATGATTTTCATTTGTAGTGAACAATTACCC
AGACCCCATGTATAGTGCAGACTCAGCATTTTTACAGCGTGTGACGGAAA
TGGCCAGTTTGGAGGTGGAAACTGTCAAAACTGAAAAGTGGAAGAAAATG
CGACGAAAATAATAACTAAGAACAAACTGGTTTTTGAGATATTCGAGTTT
GAACTCGATgctatttttctaaatattataaatttctagatgtatatttt
gtataaaagAATTTATGTtggtaaaaaagaatttttatgtTGGTAAAAAT
GCAGAACGAAAAAT

Coding sequence (CDS) from alignment at scaffold_412:94265..97778+

>TCONS_00064375 ID=TCONS_00064375|Name=TCONS_00064375|organism=Clytia hemisphaerica|type=CDS|length=3480bp|location=Sequence derived from alignment at scaffold_412:94265..97778+ (Clytia hemisphaerica)
ATGAAGTCTAGTGTTAGTATTTGGTCGCTGAATGAGATGAGCTGTCGAGC
GTGTGGGAGTGTTCCATTGCGTGATCACCTCACTACACCTGTCAATCCTC
GCGTTGCCAGGGGTTTCGGCAAACTCTCCTCTTCTGGTATTACAACGCGC
GTGCAATACAATGACCTTTCCAACATCCATATCTCGCCCTTCAAAGACAC
AGGAAGGAGCAGCTTTGAACGATCATCCACAACTCACTCAACACAAAATG
GAATCCAAAATCTCGCTTCTCATCTAAgCACGAAATCGATCTTGGTCCCA
TCAACCACCACTACACCTCTCCCGAAACACATCTCCGACAAACCACCATC
TTGCATGATGACGTCACAGCTCTTGAAATGCGATCCTCGACAACTGCTTG
TGACAGGGTATCGTTCTGATGTCTTCACTTCCAGACCTTTTCTACCGGCg
acgaaaagtttgaaaacaacAACAGCGACCGCTTCTTCGTCTTACCATGG
CAATAAGCAAACAACCCCAAAAACTCATCACAGCTTCAGGTGGAAAACCA
AACCATCAAATACTGCACGAGTGAACAATTACCCAGACCCCATGTATAGT
GCAGACTCAGCATTTTTACAGCGTGTGACGGAAATGGCCAGTTTGGAGGT
GGAAACTGTCAAAACTGAAAAGTGGAAGAAAATGCGACGAAAATAAATGA
AGTCTAGTGTTAGTATTTGGTCGCTGAATGAGATGAGCTGTCGAGCGTGT
GGGAGTGTTCCATTGCGTGATCACCTCACTACACCTGTCAATCCTCGCGT
TGCCAGGGGTTTCGGCAAACTCTCCTCTTCTGGTATTACAACGCGCGTGC
AATACAATGACCTTTCCAACATCCATATCTCGCCCTTCAAAGACACAGGA
AGGAGCAGCTTTGAACGATCATCCACAACTCACTCAACACAAAATGGAAT
CCAAAATCTCGCTTCTCATCTAAgCACGAAATCGATCTTGGTCCCATCAA
CCACCACTACACCTCTCCCGAAACACATCTCCGACAAACCACCATCTTGC
ATGATGACGTCACAGCTCTTGAAATGCGATCCTCGACAACTGCTTGTGAC
AGGGTATCGTTCTGATGTCTTCACTTCCAGACCTTTTCTACCGGCgacga
aaagtttgaaaacaacAACAGCGACCGCTTCTTCGTCTTACCATGGCAAT
AAGCAAACAACCCCAAAAACTCATCACAGCTTCAGGTGGAAAACCAAACC
ATCAAATACTGCACGAGTGAACAATTACCCAGACCCCATGTATAGTGCAG
ACTCAGCATTTTTACAGCGTGTGACGGAAATGGCCAGTTTGGAGGTGGAA
ACTGTCAAAACTGAAAAGTGGAAGAAAATGCGACGAAAATAAATGAAGTC
TAGTGTTAGTATTTGGTCGCTGAATGAGATGAGCTGTCGAGCGTGTGGGA
GTGTTCCATTGCGTGATCACCTCACTACACCTGTCAATCCTCGCGTTGCC
AGGGGTTTCGGCAAACTCTCCTCTTCTGGTATTACAACGCGCGTGCAATA
CAATGACCTTTCCAACATCCATATCTCGCCCTTCAAAGACACAGGAAGGA
GCAGCTTTGAACGATCATCCACAACTCACTCAACACAAAATGGAATCCAA
AATCTCGCTTCTCATCTAAgCACGAAATCGATCTTGGTCCCATCAACCAC
CACTACACCTCTCCCGAAACACATCTCCGACAAACCACCATCTTGCATGA
TGACGTCACAGCTCTTGAAATGCGATCCTCGACAACTGCTTGTGACAGGG
TATCGTTCTGATGTCTTCACTTCCAGACCTTTTCTACCGGCgacgaaaag
tttgaaaacaacAACAGCGACCGCTTCTTCGTCTTACCATGGCAATAAGC
AAACAACCCCAAAAACTCATCACAGCTTCAGGTGGAAAACCAAACCATCA
AATACTGCACGAGTGAACAATTACCCAGACCCCATGTATAGTGCAGACTC
AGCATTTTTACAGCGTGTGACGGAAATGGCCAGTTTGGAGGTGGAAACTG
TCAAAACTGAAAAGTGGAAGAAAATGCGACGAAAATAAATGAAGTCTAGT
GTTAGTATTTGGTCGCTGAATGAGATGAGCTGTCGAGCGTGTGGGAGTGT
TCCATTGCGTGATCACCTCACTACACCTGTCAATCCTCGCGTTGCCAGGG
GTTTCGGCAAACTCTCCTCTTCTGGTATTACAACGCGCGTGCAATACAAT
GACCTTTCCAACATCCATATCTCGCCCTTCAAAGACACAGGAAGGAGCAG
CTTTGAACGATCATCCACAACTCACTCAACACAAAATGGAATCCAAAATC
TCGCTTCTCATCTAAgCACGAAATCGATCTTGGTCCCATCAACCACCACT
ACACCTCTCCCGAAACACATCTCCGACAAACCACCATCTTGCATGATGAC
GTCACAGCTCTTGAAATGCGATCCTCGACAACTGCTTGTGACAGGGTATC
GTTCTGATGTCTTCACTTCCAGACCTTTTCTACCGGCgacgaaaagtttg
aaaacaacAACAGCGACCGCTTCTTCGTCTTACCATGGCAATAAGCAAAC
AACCCCAAAAACTCATCACAGCTTCAGGTGGAAAACCAAACCATCAAATA
CTGCACGAGTGAACAATTACCCAGACCCCATGTATAGTGCAGACTCAGCA
TTTTTACAGCGTGTGACGGAAATGGCCAGTTTGGAGGTGGAAACTGTCAA
AACTGAAAAGTGGAAGAAAATGCGACGAAAATAAATGAAGTCTAGTGTTA
GTATTTGGTCGCTGAATGAGATGAGCTGTCGAGCGTGTGGGAGTGTTCCA
TTGCGTGATCACCTCACTACACCTGTCAATCCTCGCGTTGCCAGGGGTTT
CGGCAAACTCTCCTCTTCTGGTATTACAACGCGCGTGCAATACAATGACC
TTTCCAACATCCATATCTCGCCCTTCAAAGACACAGGAAGGAGCAGCTTT
GAACGATCATCCACAACTCACTCAACACAAAATGGAATCCAAAATCTCGC
TTCTCATCTAAgCACGAAATCGATCTTGGTCCCATCAACCACCACTACAC
CTCTCCCGAAACACATCTCCGACAAACCACCATCTTGCATGATGACGTCA
CAGCTCTTGAAATGCGATCCTCGACAACTGCTTGTGACAGGGTATCGTTC
TGATGTCTTCACTTCCAGACCTTTTCTACCGGCgacgaaaagtttgaaaa
caacAACAGCGACCGCTTCTTCGTCTTACCATGGCAATAAGCAAACAACC
CCAAAAACTCATCACAGCTTCAGGTGGAAAACCAAACCATCAAATACTGC
ACGAGTGAACAATTACCCAGACCCCATGTATAGTGCAGACTCAGCATTTT
TACAGCGTGTGACGGAAATGGCCAGTTTGGAGGTGGAAACTGTCAAAACT
GAAAAGTGGAAGAAAATGCGACGAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040360XLOC_040360Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064375-exon-scaffold_412-1491911889:94265..94643TCONS_00064375-exon-scaffold_412-1491911889:94265..94643Clytia hemisphaericaexon
TCONS_00064375-exon-scaffold_412-1510915933:94265..94643TCONS_00064375-exon-scaffold_412-1510915933:94265..94643Clytia hemisphaericaexon
TCONS_00064375-exon-scaffold_412-1575043694:94265..94643TCONS_00064375-exon-scaffold_412-1575043694:94265..94643Clytia hemisphaericaexon
TCONS_00064375-exon-scaffold_412-1491911889:94916..94997TCONS_00064375-exon-scaffold_412-1491911889:94916..94997Clytia hemisphaericaexon
TCONS_00064375-exon-scaffold_412-1510915933:94916..94997TCONS_00064375-exon-scaffold_412-1510915933:94916..94997Clytia hemisphaericaexon
TCONS_00064375-exon-scaffold_412-1575043694:94916..94997TCONS_00064375-exon-scaffold_412-1575043694:94916..94997Clytia hemisphaericaexon
TCONS_00064375-exon-scaffold_412-1491911889:95331..95591TCONS_00064375-exon-scaffold_412-1491911889:95331..95591Clytia hemisphaericaexon
TCONS_00064375-exon-scaffold_412-1510915933:95331..95591TCONS_00064375-exon-scaffold_412-1510915933:95331..95591Clytia hemisphaericaexon
TCONS_00064375-exon-scaffold_412-1575043694:95331..95591TCONS_00064375-exon-scaffold_412-1575043694:95331..95591Clytia hemisphaericaexon
TCONS_00064375-exon-scaffold_412-1491911889:95936..95967TCONS_00064375-exon-scaffold_412-1491911889:95936..95967Clytia hemisphaericaexon
TCONS_00064375-exon-scaffold_412-1510915933:95936..95967TCONS_00064375-exon-scaffold_412-1510915933:95936..95967Clytia hemisphaericaexon
TCONS_00064375-exon-scaffold_412-1575043694:95936..95967TCONS_00064375-exon-scaffold_412-1575043694:95936..95967Clytia hemisphaericaexon
TCONS_00064375-exon-scaffold_412-1491911889:97502..97778TCONS_00064375-exon-scaffold_412-1491911889:97502..97778Clytia hemisphaericaexon
TCONS_00064375-exon-scaffold_412-1510915933:97502..97778TCONS_00064375-exon-scaffold_412-1510915933:97502..97778Clytia hemisphaericaexon
TCONS_00064375-exon-scaffold_412-1575043694:97502..97778TCONS_00064375-exon-scaffold_412-1575043694:97502..97778Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064375-proteinTCONS_00064375-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_412supercontigscaffold_412:94265..97778 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15151	0.768681	1.75929	0.810834	0.289854	0	0.521367	0.687944	1.58088	2.22158	2.15872	1.52475	1.00148	0.815018	0.80219	0.164385	4.45245	3.12529	0.3371	0.717131	9.74215	7.2736	1.52821	4.03775	1.09088	3.59533	0.943957	0.907026	1.72864	1.55859
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064375 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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