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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064374 ID=TCONS_00064374|Name=TCONS_00064374|organism=Clytia hemisphaerica|type=transcript|length=809bp
ttttttgacaagaAGCAGTTGCGTCCTCACCCTGGCGGGTCTGAGAAGAT
AATATCAATTTCCATTTCATTTCAACAGTAGAATCTAATAAACACATTGA
TTCGGACAACCTTCTTTTTGATGCATGTTCAAACCAGTGAATGTTGATTT
TGTTGATAAAGGAGGTGCGCAGAAGCAAAGGAACCTTTATTTCTCAGAAA
CAAGCAGCAAACAATCTGACGCTTTCACTGCTCACAAAGCACGAAATCGA
TCTTGGTCCCATCAACCACCACTACACCTCTCCCGAAACACATCTCCGAC
AAACCACCATCTTGCATGATGACGTCACAGCTCTTGAAATGCGATCCTCG
ACAACTGCTTGTGACAGGGTATCGTTCTGATGTCTTCACTTCCAGACCTT
TTCTACCGGCgacgaaaagtttgaaaacaacAACAGCGACCGCTTCTTCG
TCTTACCATGGCAATAAGCAAACAACCCCAAAAACTCATCACAGCTTCAG
GTGGAAAACCAAACCATCAAATACTGCACGAGTGAACAATTACCCAGACC
CCATGTATAGTGCAGACTCAGCATTTTTACAGCGTGTGACGGAAATGGCC
AGTTTGGAGGTGGAAACTGTCAAAACTGAAAAGTGGAAGAAAATGCGACG
AAAATAATAACTAAGAACAAACTGGTTTTTGAGATATTCGAGTTTGAACT
CGATgctatttttctaaatattataaatttctagatgtatattttgtata
aaagAATTTATGTtggtaaaaaagaatttttatgtTGGTAAAAATGCAGA
ACGAAAAAT Run BLAST on NCBI transcript from alignment at scaffold_412:90327..97778+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064374 ID=TCONS_00064374|Name=TCONS_00064374|organism=Clytia hemisphaerica|type=transcript|length=7452bp|location=Sequence derived from alignment at scaffold_412:90327..97778+ (Clytia hemisphaerica)
ttttttgacaagaAGCAGTTGCGTCCTCACCCTGGCGGGTCTGAGAAGAT
AATATCAATTTCCATTTCATTTCAACAGTAGAATCTAATAAACACATTGA
TTCGGACAACCTTCTTTTTGATGCATGTTCAAACCAGTGAATGTTGATTT
TGTTGATAAAGGAGGTGCGCAGAAGCAAAGGAACCTTTATTTCTCAGAAA
CAAGCAGCAAACAATCTGACGCTTTCACTGCTCACAAAGGTAACctcttt
tttctctcttctcTCTTTTATGCACATAGATCGTTCCATGTGACAAGAAT
TTTCGACTGAATTTATTTCGGGAAAGAAAAACCCGCTAGAAATATTTAGC
CTTGTTGATACATCATTTGTGTTTTTTTCGTTTATTTGCGATGAAAATAA
GATTCATTCCAAACTGTATTATGCTGCGGTGTGACGAGTTATGAAAGAAG
ACGCCATAAGCATGGATCTGATTTcaagaaaaagctttttttcatTTGAC
ACAATATTGTGAGGTTCAATGGGGGTGTGAATACTTTTGTCATAATCTGT
CGCCATAAGCATGgatcaattaaaaagaaacaccaattaaaaagaaacac
caattactctaaatttgagtctaaggtgGTCTTGTATGCCCCTGCGGGCA
CGGTCACCATTGTTCTTTagatacaaaaaagtcaacaaacaactattaaa
aacaaacaaaaatgtgATGTGATGAATTATTGTCTCTGGGTGAGACATCC
TTATATACCCTGGTCGAACATTCTAATCGATGCAAAACACCTATCAATGG
AAACTTGGAACCATCAACGTACGTACAGGACGAGAAGACCAAAAGCTTGA
ACGAATTATTCGCGAAATCGATAAAGCAGATATCAGCATCTGTGCCCTAC
AGGAAGTCAGACGTTTATCTCAAGGATCAGCTTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAACACAAATATCGCATCAACTTGAAAAGTCTCACCCGA
ACACAGCGGTACCAAATAcgaaataaaaacatccaaacgtTTGGACAAGC
GGAACTCCCATGGATTGGGTATGCGGATGATTTAGTACTTTTCTTTACTG
ACAAAGAAAGTCTTTTATCTGGTTCTGAACTTCTATAAACCaagttttcg
aaagttttggGCTTTTAGTTAACAAACTCAAAACCAGAAACTATGGTTCT
GAATCACAAAACTCTTGAACAACACTATCACAACACAATCATCTCACTCG
CCGAGACACCAATCAAAAACGTCACCAACTTCACATACCTTGGGTCGATA
ATTAGTCATGACGAGCCCAATACCGGAAATGCAGAAGTCAATAATCGTAT
TTAAATGGCATCTGCTAAATTCAACGAAATGTCTAACCTCCTTCAAAATC
AACGAATGAACCTTTGCACCCGAATGAACTTCCTCAATAGTTTTGTGAGA
AGTCGGCTTACGTACGCGTGTCAAAACTGGAACCTAAcgaaaaatgaatt
tgaaagattgaaTGTTAGTTATCGTTCTTTTCTTCGGCGAATGATACGTA
ATGGTCGAAAGTTTGTAAATCCGACTGAAAATGATTATCGTTTGATTATA
TCTAATCAACGTCTGCACGAAATTTGTCAGACATGtgacttagaattttt
tataagagaTCAACAAAAGAACTATATGTCACATGTTATTCGAATGAACA
CGGAACGTTCAATCAAGCAGCTGGCTTTTAACGATGATAAATATACAAAG
AGAGGAAGGCCTGTGAGAACTCTACTCGACCAGGTCTTAGATAACTTAGA
TATTTCTATTGATGAATTTTGcactcttgcccttaagggcaAGAATTAGA
ATTTGATGGAGAGATGTGTGACTGAGAAAATAGGGACTTATCCCAGGTTT
CCTCTCCTTGCACATTTTTCCATCTCTGTTTAACCTAGGAATAGGGATAC
agtaaattttatatatatatgtCTAAATAAGAGATTTTCGAGAGATTGTG
ATGAAAGTTCATCAAATATTGaacactttttcaaacttttgatttcaaaa
tgaaattgttttaatAAACGATCAGTATGAATTCTGTGTTTGTAATTCGA
GAAAGTTGGAAAAAATTGCTTTCATTAAGTGTTTGTTGGACCTGAGAAAT
ATAAAGTTCTTTTTGGGAGAGATGAAGTCTAGTGTTAGTATTTGGTCGCT
GAATGAGATGAGCTGTCGAGCGTGTGGGAGTGTTCCATTGCGTGATCACC
TCACTACACCTGTCAATCCTCGCGTTGCCAGGGGTTTCGGCAAACTCTCC
TCTTCTGGTATTACAACGCGCGTGCAATACAATGACCTTTCCAACATCCA
TATCTCGCCCTTCAAAGGTCCTATATATGACCTTATTTTAattgtatttt
tcaattttaaagcaTCATGATTATCAATCAATAAGCCATGCCAACatata
taaatttttaaaaagatcattttgatAATGGTCATGGTACAGAATCGCAA
AAATGGttatcaaattcataaaaaagcGAATCCTTGGGGACTAGGTACGA
GGTTTAACAATCTTTCAGGTGTAGTTAACAACCAACATCCTTGTACAAAA
TCTTTCCTGTGAACTTACAGAAACATTCTTTTCTTCTAGACACAGGAAGG
AGCAGCTTTGAACGATCATCCACAACTCACTCAACACAAAATGGAATCCA
AAATCTCGCTTCTCATCTAAggttttttttcacacaaattTTAAACCGTC
CTCTTTCTTCGGGCGGGAAGAAGTTTTGGCCAATTCGccaatttttgtac
aatttggacgaattaagaaaaatttaagtttgGCGTCGCGATGAATGATT
TTGTAATGACTGGGCTAATTAAGGGTGTTGTCAGGAAAAATGAAACCAAA
GTATTAAAACCTTTCAATGCCGGCAAAAATCCTGATATCCAatttaaagc
tgaaaattagaattttggGATCATCCATTTTATCCCTAATGATTAAAAAT
AGATTTATTGAAGACAGGTGTTTTAAAGCTCTTACATACTTTCCTTCTTT
TCAGCACGAAATCGATCTTGGTCCCATCAACCACCACTACACCTCTCCCG
AAACACATCTCCGACAAACCACCATCTTGCATGATGACGTCACAGCTCTT
GAAATGCGATCCTCGACAACTGCTTGTGACAGGGTATCGTTCTGATGTCT
TCACTTCCAGACCTTTTCTACCGGCgacgaaaagtttgaaaacaacAACA
GCGACCGCTTCTTCGTCTTACCATGGCAATAAGCAAACAACCCCAAAAAC
TCATCACAGCTTCAGGTACCTAAATTGAGTTAGATTTAATTCATAGTTTC
ATACTTTCACACCTAACACTTTGATCTACTTTAATAGGATGAATTTTCGC
GgcaacttaatttcgcggatgacattATCAGGGGACAGtaattttgtgtc
ttttttacTGTCAAATTATACAtatggttgttgaaatacgtattattagc
gcttctttgatgtcaGTTAACATTTTAAAGTAGTTATCcgacattttttg
agttttgttcaaAAACATTTCGCCGATAAGACTATtccaaatttccagtt
tttgtAAGAATAAAGGTCTAACACTGTAAAGGTCTAACATTTCTCTGCTC
TCTTTAAAGGTGGAAAACCAAACCATCAAATACTGCACGAGGTATTTTTT
ATCCTTCTCAAAAGCTTTATCTGTAGTTTGGGGTTCAGTTATTCACTCAA
CACTCGGAATAAGTACTTGGCACCCTGAACTGCAATCGTCTCACCTCCCC
GGTGGGAGGAGGGGGCACTCGActcaaaattaggcctttgaaatagaacc
cttacagtgcagagataatttatgtaaatttgagtaaatttgaacaaaaa
atcgAGCATTCCAGcgtatttttttgaaacctttggagcatttttaggca
aaaatttTCAGTGATCGAAATAGCGGTGGGTTATCGGTTGAAaccaacaa
gaaaaaaaatcaccgacccgaaaattttcggaaaatgtGAAAATAACCGA
CCAATATTTGTGTGAGCTAAACTAATCTTGATGATCAGTTATTCATGGAA
TATCTACTTTATGACTAGTTCCTTAGTTGTAACTTTCTTCTCTTATTTCT
TGGTTACTTCAAACTCTAttacacctccttctcacagacccggtaggatt
ttttcaaccagtggggataaaaataacggaccaaattcgatggggattga
tatttccatagtttttatggctggggatttcaattcttttgttttcaagt
caaagaATTCAGTAGGGATGGGAAAAATAGCATAATATTTTGCAGTGAGG
ATTGGTTTATTTGATTTTTTTCATTGGGGAGAGAAATTGGAAGATAATTT
TCCACCGGGGACGATATTTAGGCCAATTTTTCCAGTGGGAAGGGTTCCCA
GTGGGTCTGTGAGAAGGGGGTGTTCTATTGACTTTCTCCTCTAATTTCTT
CGTTACTTCGAATTCTATTCCTTCGTGACTTTCTCCTCTAATTTCTTCGT
TACTTCGAGCACTATTCCTTGCTAACTTTCCAATGCTTCAGTCTTAAaaa
gtttggtatcgttggGAAGGTAGGAAGGAGCTTATTACCAAACGTTTTAA
AAGTTGAAGCATTGGCTGAGAAATAAACAAGCATAGTAAAATTTAGTGCA
CatttatcgtgaatagactttcaTTTCTTCGATACTTTAAACCCTATAAA
ACTTTCTTCTTTAATTACTTCTTTTTATCTGGACTTAATTTAGCTTTTTA
TTACTGATGTCAgtttgttttctgttttctgttaAGTTGAGAGATTTATA
TGAACTAATTGACATGAAAATAAGGCTAAGGGTTAAAACAAGTGTTTAAA
AGCCAGCAAAAAAGACAAATTTTCGAAGTGTATATTAAATAACCGATCAG
AAGGAAAACCTTATTTCGACCACTGCAAAATATGGttggattttacaaat
tttacacccttagagtgcatttttctcatctttgctcatttcgacaCTCA
CATTActctttgggaagcttggaaaaggaACCCTTAAGGACCGTAAGTAC
GGTCGGTTGTTTATCTTGAGTGCCCCCCTCCCCGGTCTCACCTCCCTTGA
GAAGTTGATTTCTGAAAATAACCACCCATCTTATGTTTGATTAGTTGAGG
ATGTTTAAATGATTTTCATTTGTAGTGAACAATTACCCAGACCCCATGTA
TAGTGCAGACTCAGCATTTTTACAGCGTGTGACGGAAATGGCCAGTTTGG
AGGTGGAAACTGTCAAAACTGAAAAGTGGAAGAAAATGCGACGAAAATAA
TAACTAAGAACAAACTGGTTTTTGAGATATTCGAGTTTGAACTCGATgct
atttttctaaatattataaatttctagatgtatattttgtataaaagAAT
TTATGTtggtaaaaaagaatttttatgtTGGTAAAAATGCAGAACGAAAA
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064374-exon-scaffold_412-1491911889:90327..90565 | TCONS_00064374-exon-scaffold_412-1491911889:90327..90565 | Clytia hemisphaerica | exon |
| TCONS_00064374-exon-scaffold_412-1510915933:90327..90565 | TCONS_00064374-exon-scaffold_412-1510915933:90327..90565 | Clytia hemisphaerica | exon |
| TCONS_00064374-exon-scaffold_412-1575043694:90327..90565 | TCONS_00064374-exon-scaffold_412-1575043694:90327..90565 | Clytia hemisphaerica | exon |
| TCONS_00064374-exon-scaffold_412-1491911889:95331..95591 | TCONS_00064374-exon-scaffold_412-1491911889:95331..95591 | Clytia hemisphaerica | exon |
| TCONS_00064374-exon-scaffold_412-1510915933:95331..95591 | TCONS_00064374-exon-scaffold_412-1510915933:95331..95591 | Clytia hemisphaerica | exon |
| TCONS_00064374-exon-scaffold_412-1575043694:95331..95591 | TCONS_00064374-exon-scaffold_412-1575043694:95331..95591 | Clytia hemisphaerica | exon |
| TCONS_00064374-exon-scaffold_412-1491911889:95936..95967 | TCONS_00064374-exon-scaffold_412-1491911889:95936..95967 | Clytia hemisphaerica | exon |
| TCONS_00064374-exon-scaffold_412-1510915933:95936..95967 | TCONS_00064374-exon-scaffold_412-1510915933:95936..95967 | Clytia hemisphaerica | exon |
| TCONS_00064374-exon-scaffold_412-1575043694:95936..95967 | TCONS_00064374-exon-scaffold_412-1575043694:95936..95967 | Clytia hemisphaerica | exon |
| TCONS_00064374-exon-scaffold_412-1491911889:97502..97778 | TCONS_00064374-exon-scaffold_412-1491911889:97502..97778 | Clytia hemisphaerica | exon |
| TCONS_00064374-exon-scaffold_412-1510915933:97502..97778 | TCONS_00064374-exon-scaffold_412-1510915933:97502..97778 | Clytia hemisphaerica | exon |
| TCONS_00064374-exon-scaffold_412-1575043694:97502..97778 | TCONS_00064374-exon-scaffold_412-1575043694:97502..97778 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_412 | supercontig | scaffold_412:90327..97778 + |
Blast
The following BLAST results are available for this feature:
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