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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064373 ID=TCONS_00064373|Name=TCONS_00064373|organism=Clytia hemisphaerica|type=transcript|length=864bp
tttttttttttgacaagaAGCAGTTGCGTCCTCACCCTGGCGGGTCTGAG
AAGATAATATCAATTTCCATTTCATTTCAACAGTAGAATCTAATAAACAC
ATTGATTCGGACAACCTTCTTTTTGATGCATGTTCAAACCAGTGAATGTT
GATTTTGTTGATAAAGGAGGTGCGCAGAAGCAAAGGAACCTTTATTTCTC
AGAAACAAGCAGCAAACAATCTGACGCTTTCACTGCTCACAAAGACACAG
GAAGGAGCAGCTTTGAACGATCATCCACAACTCACTCAACACAAAATGGA
ATCCAAAATCTCGCTTCTCATCTAAgCACGAAATCGATCTTGGTCCCATC
AACCACCACTACACCTCTCCCGAAACACATCTCCGACAAACCACCATCTT
GCATGATGACGTCACAGCTCTTGAAATGCGATCCTCGACAACTGCTTGTG
ACAGGGTATCGTTCTGATGTCTTCACTTCCAGACCTTTTCTACCGGCgac
gaaaagtttgaaaacaacAACAGCGACCGCTTCTTCGTCTTACCATGGCA
ATAAGCAAACAACCCCAAAAACTCATCACAGCTTCAGTGAACAATTACCC
AGACCCCATGTATAGTGCAGACTCAGCATTTTTACAGCGTGTGACGGAAA
TGGCCAGTTTGGAGGTGGAAACTGTCAAAACTGAAAAGTGGAAGAAAATG
CGACGAAAATAATAACTAAGAACAAACTGGTTTTTGAGATATTCGAGTTT
GAACTCGATgctatttttctaaatattataaatttctagatgtatatttt
gtataaaagAATTTATGTtggtaaaaaagaatttttatgtTGGTAAAAAT
GCAGAACGAAAAAT Run BLAST on NCBI transcript from alignment at scaffold_412:90322..97778+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064373 ID=TCONS_00064373|Name=TCONS_00064373|organism=Clytia hemisphaerica|type=transcript|length=7457bp|location=Sequence derived from alignment at scaffold_412:90322..97778+ (Clytia hemisphaerica)
tttttttttttgacaagaAGCAGTTGCGTCCTCACCCTGGCGGGTCTGAG
AAGATAATATCAATTTCCATTTCATTTCAACAGTAGAATCTAATAAACAC
ATTGATTCGGACAACCTTCTTTTTGATGCATGTTCAAACCAGTGAATGTT
GATTTTGTTGATAAAGGAGGTGCGCAGAAGCAAAGGAACCTTTATTTCTC
AGAAACAAGCAGCAAACAATCTGACGCTTTCACTGCTCACAAAGGTAACc
tcttttttctctcttctcTCTTTTATGCACATAGATCGTTCCATGTGACA
AGAATTTTCGACTGAATTTATTTCGGGAAAGAAAAACCCGCTAGAAATAT
TTAGCCTTGTTGATACATCATTTGTGTTTTTTTCGTTTATTTGCGATGAA
AATAAGATTCATTCCAAACTGTATTATGCTGCGGTGTGACGAGTTATGAA
AGAAGACGCCATAAGCATGGATCTGATTTcaagaaaaagctttttttcat
TTGACACAATATTGTGAGGTTCAATGGGGGTGTGAATACTTTTGTCATAA
TCTGTCGCCATAAGCATGgatcaattaaaaagaaacaccaattaaaaaga
aacaccaattactctaaatttgagtctaaggtgGTCTTGTATGCCCCTGC
GGGCACGGTCACCATTGTTCTTTagatacaaaaaagtcaacaaacaacta
ttaaaaacaaacaaaaatgtgATGTGATGAATTATTGTCTCTGGGTGAGA
CATCCTTATATACCCTGGTCGAACATTCTAATCGATGCAAAACACCTATC
AATGGAAACTTGGAACCATCAACGTACGTACAGGACGAGAAGACCAAAAG
CTTGAACGAATTATTCGCGAAATCGATAAAGCAGATATCAGCATCTGTGC
CCTACAGGAAGTCAGACGTTTATCTCAAGGATCAGCTTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAACACAAATATCGCATCAACTTGAAAAGTCTCA
CCCGAACACAGCGGTACCAAATAcgaaataaaaacatccaaacgtTTGGA
CAAGCGGAACTCCCATGGATTGGGTATGCGGATGATTTAGTACTTTTCTT
TACTGACAAAGAAAGTCTTTTATCTGGTTCTGAACTTCTATAAACCaagt
tttcgaaagttttggGCTTTTAGTTAACAAACTCAAAACCAGAAACTATG
GTTCTGAATCACAAAACTCTTGAACAACACTATCACAACACAATCATCTC
ACTCGCCGAGACACCAATCAAAAACGTCACCAACTTCACATACCTTGGGT
CGATAATTAGTCATGACGAGCCCAATACCGGAAATGCAGAAGTCAATAAT
CGTATTTAAATGGCATCTGCTAAATTCAACGAAATGTCTAACCTCCTTCA
AAATCAACGAATGAACCTTTGCACCCGAATGAACTTCCTCAATAGTTTTG
TGAGAAGTCGGCTTACGTACGCGTGTCAAAACTGGAACCTAAcgaaaaat
gaatttgaaagattgaaTGTTAGTTATCGTTCTTTTCTTCGGCGAATGAT
ACGTAATGGTCGAAAGTTTGTAAATCCGACTGAAAATGATTATCGTTTGA
TTATATCTAATCAACGTCTGCACGAAATTTGTCAGACATGtgacttagaa
ttttttataagagaTCAACAAAAGAACTATATGTCACATGTTATTCGAAT
GAACACGGAACGTTCAATCAAGCAGCTGGCTTTTAACGATGATAAATATA
CAAAGAGAGGAAGGCCTGTGAGAACTCTACTCGACCAGGTCTTAGATAAC
TTAGATATTTCTATTGATGAATTTTGcactcttgcccttaagggcaAGAA
TTAGAATTTGATGGAGAGATGTGTGACTGAGAAAATAGGGACTTATCCCA
GGTTTCCTCTCCTTGCACATTTTTCCATCTCTGTTTAACCTAGGAATAGG
GATACagtaaattttatatatatatgtCTAAATAAGAGATTTTCGAGAGA
TTGTGATGAAAGTTCATCAAATATTGaacactttttcaaacttttgattt
caaaatgaaattgttttaatAAACGATCAGTATGAATTCTGTGTTTGTAA
TTCGAGAAAGTTGGAAAAAATTGCTTTCATTAAGTGTTTGTTGGACCTGA
GAAATATAAAGTTCTTTTTGGGAGAGATGAAGTCTAGTGTTAGTATTTGG
TCGCTGAATGAGATGAGCTGTCGAGCGTGTGGGAGTGTTCCATTGCGTGA
TCACCTCACTACACCTGTCAATCCTCGCGTTGCCAGGGGTTTCGGCAAAC
TCTCCTCTTCTGGTATTACAACGCGCGTGCAATACAATGACCTTTCCAAC
ATCCATATCTCGCCCTTCAAAGGTCCTATATATGACCTTATTTTAattgt
atttttcaattttaaagcaTCATGATTATCAATCAATAAGCCATGCCAAC
atatataaatttttaaaaagatcattttgatAATGGTCATGGTACAGAAT
CGCAAAAATGGttatcaaattcataaaaaagcGAATCCTTGGGGACTAGG
TACGAGGTTTAACAATCTTTCAGGTGTAGTTAACAACCAACATCCTTGTA
CAAAATCTTTCCTGTGAACTTACAGAAACATTCTTTTCTTCTAGACACAG
GAAGGAGCAGCTTTGAACGATCATCCACAACTCACTCAACACAAAATGGA
ATCCAAAATCTCGCTTCTCATCTAAggttttttttcacacaaattTTAAA
CCGTCCTCTTTCTTCGGGCGGGAAGAAGTTTTGGCCAATTCGccaatttt
tgtacaatttggacgaattaagaaaaatttaagtttgGCGTCGCGATGAA
TGATTTTGTAATGACTGGGCTAATTAAGGGTGTTGTCAGGAAAAATGAAA
CCAAAGTATTAAAACCTTTCAATGCCGGCAAAAATCCTGATATCCAattt
aaagctgaaaattagaattttggGATCATCCATTTTATCCCTAATGATTA
AAAATAGATTTATTGAAGACAGGTGTTTTAAAGCTCTTACATACTTTCCT
TCTTTTCAGCACGAAATCGATCTTGGTCCCATCAACCACCACTACACCTC
TCCCGAAACACATCTCCGACAAACCACCATCTTGCATGATGACGTCACAG
CTCTTGAAATGCGATCCTCGACAACTGCTTGTGACAGGGTATCGTTCTGA
TGTCTTCACTTCCAGACCTTTTCTACCGGCgacgaaaagtttgaaaacaa
cAACAGCGACCGCTTCTTCGTCTTACCATGGCAATAAGCAAACAACCCCA
AAAACTCATCACAGCTTCAGGTACCTAAATTGAGTTAGATTTAATTCATA
GTTTCATACTTTCACACCTAACACTTTGATCTACTTTAATAGGATGAATT
TTCGCGgcaacttaatttcgcggatgacattATCAGGGGACAGtaatttt
gtgtcttttttacTGTCAAATTATACAtatggttgttgaaatacgtatta
ttagcgcttctttgatgtcaGTTAACATTTTAAAGTAGTTATCcgacatt
ttttgagttttgttcaaAAACATTTCGCCGATAAGACTATtccaaatttc
cagtttttgtAAGAATAAAGGTCTAACACTGTAAAGGTCTAACATTTCTC
TGCTCTCTTTAAAGGTGGAAAACCAAACCATCAAATACTGCACGAGGTAT
TTTTTATCCTTCTCAAAAGCTTTATCTGTAGTTTGGGGTTCAGTTATTCA
CTCAACACTCGGAATAAGTACTTGGCACCCTGAACTGCAATCGTCTCACC
TCCCCGGTGGGAGGAGGGGGCACTCGActcaaaattaggcctttgaaata
gaacccttacagtgcagagataatttatgtaaatttgagtaaatttgaac
aaaaaatcgAGCATTCCAGcgtatttttttgaaacctttggagcattttt
aggcaaaaatttTCAGTGATCGAAATAGCGGTGGGTTATCGGTTGAAacc
aacaagaaaaaaaatcaccgacccgaaaattttcggaaaatgtGAAAATA
ACCGACCAATATTTGTGTGAGCTAAACTAATCTTGATGATCAGTTATTCA
TGGAATATCTACTTTATGACTAGTTCCTTAGTTGTAACTTTCTTCTCTTA
TTTCTTGGTTACTTCAAACTCTAttacacctccttctcacagacccggta
ggattttttcaaccagtggggataaaaataacggaccaaattcgatgggg
attgatatttccatagtttttatggctggggatttcaattcttttgtttt
caagtcaaagaATTCAGTAGGGATGGGAAAAATAGCATAATATTTTGCAG
TGAGGATTGGTTTATTTGATTTTTTTCATTGGGGAGAGAAATTGGAAGAT
AATTTTCCACCGGGGACGATATTTAGGCCAATTTTTCCAGTGGGAAGGGT
TCCCAGTGGGTCTGTGAGAAGGGGGTGTTCTATTGACTTTCTCCTCTAAT
TTCTTCGTTACTTCGAATTCTATTCCTTCGTGACTTTCTCCTCTAATTTC
TTCGTTACTTCGAGCACTATTCCTTGCTAACTTTCCAATGCTTCAGTCTT
AAaaagtttggtatcgttggGAAGGTAGGAAGGAGCTTATTACCAAACGT
TTTAAAAGTTGAAGCATTGGCTGAGAAATAAACAAGCATAGTAAAATTTA
GTGCACatttatcgtgaatagactttcaTTTCTTCGATACTTTAAACCCT
ATAAAACTTTCTTCTTTAATTACTTCTTTTTATCTGGACTTAATTTAGCT
TTTTATTACTGATGTCAgtttgttttctgttttctgttaAGTTGAGAGAT
TTATATGAACTAATTGACATGAAAATAAGGCTAAGGGTTAAAACAAGTGT
TTAAAAGCCAGCAAAAAAGACAAATTTTCGAAGTGTATATTAAATAACCG
ATCAGAAGGAAAACCTTATTTCGACCACTGCAAAATATGGttggatttta
caaattttacacccttagagtgcatttttctcatctttgctcatttcgac
aCTCACATTActctttgggaagcttggaaaaggaACCCTTAAGGACCGTA
AGTACGGTCGGTTGTTTATCTTGAGTGCCCCCCTCCCCGGTCTCACCTCC
CTTGAGAAGTTGATTTCTGAAAATAACCACCCATCTTATGTTTGATTAGT
TGAGGATGTTTAAATGATTTTCATTTGTAGTGAACAATTACCCAGACCCC
ATGTATAGTGCAGACTCAGCATTTTTACAGCGTGTGACGGAAATGGCCAG
TTTGGAGGTGGAAACTGTCAAAACTGAAAAGTGGAAGAAAATGCGACGAA
AATAATAACTAAGAACAAACTGGTTTTTGAGATATTCGAGTTTGAACTCG
ATgctatttttctaaatattataaatttctagatgtatattttgtataaa
agAATTTATGTtggtaaaaaagaatttttatgtTGGTAAAAATGCAGAAC
GAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064373-exon-scaffold_412-1491911889:90322..90565 | TCONS_00064373-exon-scaffold_412-1491911889:90322..90565 | Clytia hemisphaerica | exon |
| TCONS_00064373-exon-scaffold_412-1510915933:90322..90565 | TCONS_00064373-exon-scaffold_412-1510915933:90322..90565 | Clytia hemisphaerica | exon |
| TCONS_00064373-exon-scaffold_412-1575043694:90322..90565 | TCONS_00064373-exon-scaffold_412-1575043694:90322..90565 | Clytia hemisphaerica | exon |
| TCONS_00064373-exon-scaffold_412-1491911889:94916..94997 | TCONS_00064373-exon-scaffold_412-1491911889:94916..94997 | Clytia hemisphaerica | exon |
| TCONS_00064373-exon-scaffold_412-1510915933:94916..94997 | TCONS_00064373-exon-scaffold_412-1510915933:94916..94997 | Clytia hemisphaerica | exon |
| TCONS_00064373-exon-scaffold_412-1575043694:94916..94997 | TCONS_00064373-exon-scaffold_412-1575043694:94916..94997 | Clytia hemisphaerica | exon |
| TCONS_00064373-exon-scaffold_412-1491911889:95331..95591 | TCONS_00064373-exon-scaffold_412-1491911889:95331..95591 | Clytia hemisphaerica | exon |
| TCONS_00064373-exon-scaffold_412-1510915933:95331..95591 | TCONS_00064373-exon-scaffold_412-1510915933:95331..95591 | Clytia hemisphaerica | exon |
| TCONS_00064373-exon-scaffold_412-1575043694:95331..95591 | TCONS_00064373-exon-scaffold_412-1575043694:95331..95591 | Clytia hemisphaerica | exon |
| TCONS_00064373-exon-scaffold_412-1491911889:97502..97778 | TCONS_00064373-exon-scaffold_412-1491911889:97502..97778 | Clytia hemisphaerica | exon |
| TCONS_00064373-exon-scaffold_412-1510915933:97502..97778 | TCONS_00064373-exon-scaffold_412-1510915933:97502..97778 | Clytia hemisphaerica | exon |
| TCONS_00064373-exon-scaffold_412-1575043694:97502..97778 | TCONS_00064373-exon-scaffold_412-1575043694:97502..97778 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_412 | supercontig | scaffold_412:90322..97778 + |
Blast
The following BLAST results are available for this feature:
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