TCONS_00064372 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064372
Unique NameTCONS_00064372
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length822

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064372 ID=TCONS_00064372|Name=TCONS_00064372|organism=Clytia hemisphaerica|type=transcript|length=822bp
GTAGGAAACAATACTTTTATTTCAGTGGATGGCacagagttttttttttt
tgacaagaAGCAGTTGCGTCCTCACCCTGGCGGGTCTGAGAAGATAATAT
CAATTTCCATTTCATTTCAACAGTAGAATCTAATAAACACATTGATTCGG
ACAACCTTCTTTTTGATGCATGTTCAAACCAGTGAATGTTGATTTTGTTG
ATAAAGGAGGTGCGCAGAAGCAAAGGAACCTTTATTTCTCAGAAACAAGC
AGCAAACAATCTGACGCTTTCACTGCTCACAAAGCACGAAATCGATCTTG
GTCCCATCAACCACCACTACACCTCTCCCGAAACACATCTCCGACAAACC
ACCATCTTGCATGATGACGTCACAGCTCTTGAAATGCGATCCTCGACAAC
TGCTTGTGACAGGGTATCGTTCTGATGTCTTCACTTCCAGACCTTTTCTA
CCGGCgacgaaaagtttgaaaacaacAACAGCGACCGCTTCTTCGTCTTA
CCATGGCAATAAGCAAACAACCCCAAAAACTCATCACAGCTTCAGTGAAC
AATTACCCAGACCCCATGTATAGTGCAGACTCAGCATTTTTACAGCGTGT
GACGGAAATGGCCAGTTTGGAGGTGGAAACTGTCAAAACTGAAAAGTGGA
AGAAAATGCGACGAAAATAATAACTAAGAACAAACTGGTTTTTGAGATAT
TCGAGTTTGAACTCGATgctatttttctaaatattataaatttctagatg
tatattttgtataaaagAATTTATGTtggtaaaaaagaatttttatgtTG
GTAAAAATGCAGAACGAAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_412:90282..97778+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064372 ID=TCONS_00064372|Name=TCONS_00064372|organism=Clytia hemisphaerica|type=transcript|length=7497bp|location=Sequence derived from alignment at scaffold_412:90282..97778+ (Clytia hemisphaerica)
GTAGGAAACAATACTTTTATTTCAGTGGATGGCacagagttttttttttt
tgacaagaAGCAGTTGCGTCCTCACCCTGGCGGGTCTGAGAAGATAATAT
CAATTTCCATTTCATTTCAACAGTAGAATCTAATAAACACATTGATTCGG
ACAACCTTCTTTTTGATGCATGTTCAAACCAGTGAATGTTGATTTTGTTG
ATAAAGGAGGTGCGCAGAAGCAAAGGAACCTTTATTTCTCAGAAACAAGC
AGCAAACAATCTGACGCTTTCACTGCTCACAAAGGTAACctcttttttct
ctcttctcTCTTTTATGCACATAGATCGTTCCATGTGACAAGAATTTTCG
ACTGAATTTATTTCGGGAAAGAAAAACCCGCTAGAAATATTTAGCCTTGT
TGATACATCATTTGTGTTTTTTTCGTTTATTTGCGATGAAAATAAGATTC
ATTCCAAACTGTATTATGCTGCGGTGTGACGAGTTATGAAAGAAGACGCC
ATAAGCATGGATCTGATTTcaagaaaaagctttttttcatTTGACACAAT
ATTGTGAGGTTCAATGGGGGTGTGAATACTTTTGTCATAATCTGTCGCCA
TAAGCATGgatcaattaaaaagaaacaccaattaaaaagaaacaccaatt
actctaaatttgagtctaaggtgGTCTTGTATGCCCCTGCGGGCACGGTC
ACCATTGTTCTTTagatacaaaaaagtcaacaaacaactattaaaaacaa
acaaaaatgtgATGTGATGAATTATTGTCTCTGGGTGAGACATCCTTATA
TACCCTGGTCGAACATTCTAATCGATGCAAAACACCTATCAATGGAAACT
TGGAACCATCAACGTACGTACAGGACGAGAAGACCAAAAGCTTGAACGAA
TTATTCGCGAAATCGATAAAGCAGATATCAGCATCTGTGCCCTACAGGAA
GTCAGACGTTTATCTCAAGGATCAGCTTNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAACACAAATATCGCATCAACTTGAAAAGTCTCACCCGAACACA
GCGGTACCAAATAcgaaataaaaacatccaaacgtTTGGACAAGCGGAAC
TCCCATGGATTGGGTATGCGGATGATTTAGTACTTTTCTTTACTGACAAA
GAAAGTCTTTTATCTGGTTCTGAACTTCTATAAACCaagttttcgaaagt
tttggGCTTTTAGTTAACAAACTCAAAACCAGAAACTATGGTTCTGAATC
ACAAAACTCTTGAACAACACTATCACAACACAATCATCTCACTCGCCGAG
ACACCAATCAAAAACGTCACCAACTTCACATACCTTGGGTCGATAATTAG
TCATGACGAGCCCAATACCGGAAATGCAGAAGTCAATAATCGTATTTAAA
TGGCATCTGCTAAATTCAACGAAATGTCTAACCTCCTTCAAAATCAACGA
ATGAACCTTTGCACCCGAATGAACTTCCTCAATAGTTTTGTGAGAAGTCG
GCTTACGTACGCGTGTCAAAACTGGAACCTAAcgaaaaatgaatttgaaa
gattgaaTGTTAGTTATCGTTCTTTTCTTCGGCGAATGATACGTAATGGT
CGAAAGTTTGTAAATCCGACTGAAAATGATTATCGTTTGATTATATCTAA
TCAACGTCTGCACGAAATTTGTCAGACATGtgacttagaattttttataa
gagaTCAACAAAAGAACTATATGTCACATGTTATTCGAATGAACACGGAA
CGTTCAATCAAGCAGCTGGCTTTTAACGATGATAAATATACAAAGAGAGG
AAGGCCTGTGAGAACTCTACTCGACCAGGTCTTAGATAACTTAGATATTT
CTATTGATGAATTTTGcactcttgcccttaagggcaAGAATTAGAATTTG
ATGGAGAGATGTGTGACTGAGAAAATAGGGACTTATCCCAGGTTTCCTCT
CCTTGCACATTTTTCCATCTCTGTTTAACCTAGGAATAGGGATACagtaa
attttatatatatatgtCTAAATAAGAGATTTTCGAGAGATTGTGATGAA
AGTTCATCAAATATTGaacactttttcaaacttttgatttcaaaatgaaa
ttgttttaatAAACGATCAGTATGAATTCTGTGTTTGTAATTCGAGAAAG
TTGGAAAAAATTGCTTTCATTAAGTGTTTGTTGGACCTGAGAAATATAAA
GTTCTTTTTGGGAGAGATGAAGTCTAGTGTTAGTATTTGGTCGCTGAATG
AGATGAGCTGTCGAGCGTGTGGGAGTGTTCCATTGCGTGATCACCTCACT
ACACCTGTCAATCCTCGCGTTGCCAGGGGTTTCGGCAAACTCTCCTCTTC
TGGTATTACAACGCGCGTGCAATACAATGACCTTTCCAACATCCATATCT
CGCCCTTCAAAGGTCCTATATATGACCTTATTTTAattgtatttttcaat
tttaaagcaTCATGATTATCAATCAATAAGCCATGCCAACatatataaat
ttttaaaaagatcattttgatAATGGTCATGGTACAGAATCGCAAAAATG
GttatcaaattcataaaaaagcGAATCCTTGGGGACTAGGTACGAGGTTT
AACAATCTTTCAGGTGTAGTTAACAACCAACATCCTTGTACAAAATCTTT
CCTGTGAACTTACAGAAACATTCTTTTCTTCTAGACACAGGAAGGAGCAG
CTTTGAACGATCATCCACAACTCACTCAACACAAAATGGAATCCAAAATC
TCGCTTCTCATCTAAggttttttttcacacaaattTTAAACCGTCCTCTT
TCTTCGGGCGGGAAGAAGTTTTGGCCAATTCGccaatttttgtacaattt
ggacgaattaagaaaaatttaagtttgGCGTCGCGATGAATGATTTTGTA
ATGACTGGGCTAATTAAGGGTGTTGTCAGGAAAAATGAAACCAAAGTATT
AAAACCTTTCAATGCCGGCAAAAATCCTGATATCCAatttaaagctgaaa
attagaattttggGATCATCCATTTTATCCCTAATGATTAAAAATAGATT
TATTGAAGACAGGTGTTTTAAAGCTCTTACATACTTTCCTTCTTTTCAGC
ACGAAATCGATCTTGGTCCCATCAACCACCACTACACCTCTCCCGAAACA
CATCTCCGACAAACCACCATCTTGCATGATGACGTCACAGCTCTTGAAAT
GCGATCCTCGACAACTGCTTGTGACAGGGTATCGTTCTGATGTCTTCACT
TCCAGACCTTTTCTACCGGCgacgaaaagtttgaaaacaacAACAGCGAC
CGCTTCTTCGTCTTACCATGGCAATAAGCAAACAACCCCAAAAACTCATC
ACAGCTTCAGGTACCTAAATTGAGTTAGATTTAATTCATAGTTTCATACT
TTCACACCTAACACTTTGATCTACTTTAATAGGATGAATTTTCGCGgcaa
cttaatttcgcggatgacattATCAGGGGACAGtaattttgtgtcttttt
tacTGTCAAATTATACAtatggttgttgaaatacgtattattagcgcttc
tttgatgtcaGTTAACATTTTAAAGTAGTTATCcgacattttttgagttt
tgttcaaAAACATTTCGCCGATAAGACTATtccaaatttccagtttttgt
AAGAATAAAGGTCTAACACTGTAAAGGTCTAACATTTCTCTGCTCTCTTT
AAAGGTGGAAAACCAAACCATCAAATACTGCACGAGGTATTTTTTATCCT
TCTCAAAAGCTTTATCTGTAGTTTGGGGTTCAGTTATTCACTCAACACTC
GGAATAAGTACTTGGCACCCTGAACTGCAATCGTCTCACCTCCCCGGTGG
GAGGAGGGGGCACTCGActcaaaattaggcctttgaaatagaacccttac
agtgcagagataatttatgtaaatttgagtaaatttgaacaaaaaatcgA
GCATTCCAGcgtatttttttgaaacctttggagcatttttaggcaaaaat
ttTCAGTGATCGAAATAGCGGTGGGTTATCGGTTGAAaccaacaagaaaa
aaaatcaccgacccgaaaattttcggaaaatgtGAAAATAACCGACCAAT
ATTTGTGTGAGCTAAACTAATCTTGATGATCAGTTATTCATGGAATATCT
ACTTTATGACTAGTTCCTTAGTTGTAACTTTCTTCTCTTATTTCTTGGTT
ACTTCAAACTCTAttacacctccttctcacagacccggtaggattttttc
aaccagtggggataaaaataacggaccaaattcgatggggattgatattt
ccatagtttttatggctggggatttcaattcttttgttttcaagtcaaag
aATTCAGTAGGGATGGGAAAAATAGCATAATATTTTGCAGTGAGGATTGG
TTTATTTGATTTTTTTCATTGGGGAGAGAAATTGGAAGATAATTTTCCAC
CGGGGACGATATTTAGGCCAATTTTTCCAGTGGGAAGGGTTCCCAGTGGG
TCTGTGAGAAGGGGGTGTTCTATTGACTTTCTCCTCTAATTTCTTCGTTA
CTTCGAATTCTATTCCTTCGTGACTTTCTCCTCTAATTTCTTCGTTACTT
CGAGCACTATTCCTTGCTAACTTTCCAATGCTTCAGTCTTAAaaagtttg
gtatcgttggGAAGGTAGGAAGGAGCTTATTACCAAACGTTTTAAAAGTT
GAAGCATTGGCTGAGAAATAAACAAGCATAGTAAAATTTAGTGCACattt
atcgtgaatagactttcaTTTCTTCGATACTTTAAACCCTATAAAACTTT
CTTCTTTAATTACTTCTTTTTATCTGGACTTAATTTAGCTTTTTATTACT
GATGTCAgtttgttttctgttttctgttaAGTTGAGAGATTTATATGAAC
TAATTGACATGAAAATAAGGCTAAGGGTTAAAACAAGTGTTTAAAAGCCA
GCAAAAAAGACAAATTTTCGAAGTGTATATTAAATAACCGATCAGAAGGA
AAACCTTATTTCGACCACTGCAAAATATGGttggattttacaaattttac
acccttagagtgcatttttctcatctttgctcatttcgacaCTCACATTA
ctctttgggaagcttggaaaaggaACCCTTAAGGACCGTAAGTACGGTCG
GTTGTTTATCTTGAGTGCCCCCCTCCCCGGTCTCACCTCCCTTGAGAAGT
TGATTTCTGAAAATAACCACCCATCTTATGTTTGATTAGTTGAGGATGTT
TAAATGATTTTCATTTGTAGTGAACAATTACCCAGACCCCATGTATAGTG
CAGACTCAGCATTTTTACAGCGTGTGACGGAAATGGCCAGTTTGGAGGTG
GAAACTGTCAAAACTGAAAAGTGGAAGAAAATGCGACGAAAATAATAACT
AAGAACAAACTGGTTTTTGAGATATTCGAGTTTGAACTCGATgctatttt
tctaaatattataaatttctagatgtatattttgtataaaagAATTTATG
TtggtaaaaaagaatttttatgtTGGTAAAAATGCAGAACGAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040360XLOC_040360Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064372-exon-scaffold_412-1491911889:90282..90565TCONS_00064372-exon-scaffold_412-1491911889:90282..90565Clytia hemisphaericaexon
TCONS_00064372-exon-scaffold_412-1510915933:90282..90565TCONS_00064372-exon-scaffold_412-1510915933:90282..90565Clytia hemisphaericaexon
TCONS_00064372-exon-scaffold_412-1575043694:90282..90565TCONS_00064372-exon-scaffold_412-1575043694:90282..90565Clytia hemisphaericaexon
TCONS_00064372-exon-scaffold_412-1491911889:95331..95591TCONS_00064372-exon-scaffold_412-1491911889:95331..95591Clytia hemisphaericaexon
TCONS_00064372-exon-scaffold_412-1510915933:95331..95591TCONS_00064372-exon-scaffold_412-1510915933:95331..95591Clytia hemisphaericaexon
TCONS_00064372-exon-scaffold_412-1575043694:95331..95591TCONS_00064372-exon-scaffold_412-1575043694:95331..95591Clytia hemisphaericaexon
TCONS_00064372-exon-scaffold_412-1491911889:97502..97778TCONS_00064372-exon-scaffold_412-1491911889:97502..97778Clytia hemisphaericaexon
TCONS_00064372-exon-scaffold_412-1510915933:97502..97778TCONS_00064372-exon-scaffold_412-1510915933:97502..97778Clytia hemisphaericaexon
TCONS_00064372-exon-scaffold_412-1575043694:97502..97778TCONS_00064372-exon-scaffold_412-1575043694:97502..97778Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_412supercontigscaffold_412:90282..97778 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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