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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064370 ID=TCONS_00064370|Name=TCONS_00064370|organism=Clytia hemisphaerica|type=transcript|length=1014bp
cGAATAAGGATGTGTCTATATTGCAGTTCTTACTCTTGGAAAGTTCGATG
TTAGTTAGCAAAATGTTgcgaaaagaaaatattttactttgCTTTCACCT
TTTGCATTCATATTACTgtattggtttttttttttcacttatttttttca
caaagTGTTTCGATTTCAAGTTATTGCTTTAGAACCCTTTTTGCTACCAT
TATAGGATTTTCCCTACATTTCtagttgttttttcaaaacacCTTATACC
TTATGTAACACGAGAATCAGGATGAGCACGAAGAACGATATTTAAGagct
aaaagaagaaaatgcttctttgaaagaagaaaatgaaaagctTCGACTTC
AACTCGAAAAGATGACAACGAGTGACCAACATCCAGCAAAAGAGAGCTCG
ATATCGGTCAGGGAATTGGAGGACGAGAAAGATGCTTTGGAGATGAAACA
CATGAATGAATGGATGGAACAAGCTCCAAAATTCTTCCCAAAGGATGGCA
AAGATGAAGtTTCAGAGGTGGATGAGGAAACATCCTATCGTGAATGGTAC
CAATGCATGTCTCAAGGGATGAAAAACGATCGCCCTTATACCGATTTAGA
ATCTATTTTTGTGCGAAAAGTATTCGGAAAGGCGCAGTCGTGGGTGGACG
TGTGGGCGACAAGCAGGGCGGATGCAAATCCATGCCACCCGAACCACCTT
CACGTGACCAGCATGTCAACGTGTTGGGTTCACAAAATTAGACTGATTCA
TCCCACCGATAAAAGAAAGAGTTTGGTAAAGGATGCATTTTGGGATTGTG
AATATAACCCAGCGAACAACGAAATTGtcgaaaactgtttttttgatAAG
GTACCAGAAGATATGTTTTATGGAAAACATAACTCGATTGTAGCGCAATT
AATTCTCAATAATTAGGTAACGATGTTTAAGAAGAGGGTAGACAGTTTTT
ATGCATTATATTGATTGTATATAATTTTGACGAATGACCTTCgaaaaaca
aaatgtaaaaCGAT Run BLAST on NCBI transcript from alignment at scaffold_412:72037..73582+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064370 ID=TCONS_00064370|Name=TCONS_00064370|organism=Clytia hemisphaerica|type=transcript|length=1546bp|location=Sequence derived from alignment at scaffold_412:72037..73582+ (Clytia hemisphaerica)
cGAATAAGGATGTGTCTATATTGCAGTTCTTACTCTTGGAAAGTTCGATG
TTAGTTAGCAAAATGTTgcgaaaagaaaatattttactttgCTTTCACCT
TTTGCATTCATATTACTgtattggtttttttttttcacttatttttttca
caaagTGTTTCGATTTCAAGTTATTGCTTTAGAACCCTTTTTGCTACCAT
TATAGGATTTTCCCTACATTTCtagttgttttttcaaaacacCTTATACC
TTATGTAACACGAGAATCAGGATGAGCACGAAGAACGATATTTAAGagct
aaaagaagaaaatgcttctttgaaagaagaaaatgaaaagctTCGACTTC
AACTCGAAAAGATGACAACGAGTGACCAACATCCAGCAAAAGAGAGCTCG
ATATCGGTCAGGGAATTGGAGGACGAGAAAGATGCTTTGGAGATGAAACA
CATGAATGAATGGATGGAACAAGCTCCAAAATTCTTCCCAAAGGATGGCA
AAGATGAAGGTAACATAGTTGCCCGTTTAATCCCAGTATGGAGTCCTCGG
GTCTAACTACCAAAACGACCCTTTGCCTTTTCTTTTCCACAATTTGCATT
GCAGGTGCATTGCCTACCCGGGGgtggggggcactcgatttttaaacgac
ggtatgtgccgccaaaaaattGGCTCTctaaatcggacccttacagtgca
gtgaaaggtgcattttaccgaacgtttctgacccttacagtgtttTTTGG
TTGTATATTATCttttattttgctgaagccacccaaaaatgagcctgaga
tgtcgaAAACAATGtgcaaaaacaaatcaaaatgaatgcgagtcaaaact
ataaaagtacatcaaatttttacagtgcatccagctaaaagaagaccctt
gtagACGAAAAACCTACCCAgaagggcggcacatgccgttggtcggacca
tatgagtatCTAATACAAAGTTAACgagagaaaaattttatcacTTCAAA
ACATTACTTGGAGTGAagataaatttgattttcttttccagtTTCAGAGG
TGGATGAGGAAACATCCTATCGTGAATGGTACCAATGCATGTCTCAAGGG
ATGAAAAACGATCGCCCTTATACCGATTTAGAATCTATTTTTGTGCGAAA
AGTATTCGGAAAGGCGCAGTCGTGGGTGGACGTGTGGGCGACAAGCAGGG
CGGATGCAAATCCATGCCACCCGAACCACCTTCACGTGACCAGCATGTCA
ACGTGTTGGGTTCACAAAATTAGACTGATTCATCCCACCGATAAAAGAAA
GAGTTTGGTAAAGGATGCATTTTGGGATTGTGAATATAACCCAGCGAACA
ACGAAATTGtcgaaaactgtttttttgatAAGGTACCAGAAGATATGTTT
TATGGAAAACATAACTCGATTGTAGCGCAATTAATTCTCAATAATTAGGT
AACGATGTTTAAGAAGAGGGTAGACAGTTTTTATGCATTATATTGATTGT
ATATAATTTTGACGAATGACCTTCgaaaaacaaaatgtaaaaCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064370-exon-scaffold_412-1491911889:72037..72545 | TCONS_00064370-exon-scaffold_412-1491911889:72037..72545 | Clytia hemisphaerica | exon |
| TCONS_00064370-exon-scaffold_412-1510915933:72037..72545 | TCONS_00064370-exon-scaffold_412-1510915933:72037..72545 | Clytia hemisphaerica | exon |
| TCONS_00064370-exon-scaffold_412-1575043694:72037..72545 | TCONS_00064370-exon-scaffold_412-1575043694:72037..72545 | Clytia hemisphaerica | exon |
| TCONS_00064370-exon-scaffold_412-1491911889:73078..73582 | TCONS_00064370-exon-scaffold_412-1491911889:73078..73582 | Clytia hemisphaerica | exon |
| TCONS_00064370-exon-scaffold_412-1510915933:73078..73582 | TCONS_00064370-exon-scaffold_412-1510915933:73078..73582 | Clytia hemisphaerica | exon |
| TCONS_00064370-exon-scaffold_412-1575043694:73078..73582 | TCONS_00064370-exon-scaffold_412-1575043694:73078..73582 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_412 | supercontig | scaffold_412:72037..73582 + |
Blast
The following BLAST results are available for this feature:
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