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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064368 ID=TCONS_00064368|Name=TCONS_00064368|organism=Clytia hemisphaerica|type=transcript|length=992bp
TTGAATTAACAAAACAAATGGTTTCATGCCCTAAGTGGATTATCGTAACT
ATTGGTGACGTAAATTTCAAAATGTGCTGATGCAATCATTTCTAAGAATA
ATGACGTTGATGTTTTTACTTCAAACAAACAATGGTTGTAGATTGGTATC
GATTAATGAGGTAGAATATTATTGCTGATATTGGATTTTCCCTACATTTC
tagttgttttttcaaaacacCTTATACCTTATGTAACACGAGAATCAGGA
TGAGCACGAAGAACGATATTTAAGagctaaaagaagaaaatgcttctttg
aaagaagaaaatgaaaagctTCGACTTCAACTCGAAAAGATGACAACGAG
TGACCAACATCCAGCAAAAGAGAGCTCGATATCGGTCAGGGAATTGGAGG
ACGAGAAAGATGCTTTGGAGATGAAACACATGAATGAATGGATGGAACAA
GCTCCAAAATTCTTCCCAAAGGATGGCAAAGATGAAGtTTCAGAGGTGGA
TGAGGAAACATCCTATCGTGAATGGTACCAATGCATGTCTCAAGGGATGA
AAAACGATCGCCCTTATACCGATTTAGAATCTATTTTTGTGCGAAAAGTA
TTCGGAAAGGCGCAGTCGTGGGTGGACGTGTGGGCGACAAGCAGGGCGGA
TGCAAATCCATGCCACCCGAACCACCTTCACGTGACCAGCATGTCAACGT
GTTGGGTTCACAAAATTAGACTGATTCATCCCACCGATAAAAGAAAGAGT
TTGGTAAAGGATGCATTTTGGGATTGTGAATATAACCCAGCGAACAACGA
AATTGtcgaaaactgtttttttgatAAGGTACCAGAAGATATGTTTTATG
GAAAACATAACTCGATTGTAGCGCAATTAATTCTCAATAATTAGGTAACG
ATGTTTAAGAAGAGGGTAGACAGTTTTTATGCATTATATTGATTGTATAT
AATTTTGACGAATGACCTTCgaaaaacaaaatgtaaaaCGAT Run BLAST on NCBI transcript from alignment at scaffold_412:71802..73582+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064368 ID=TCONS_00064368|Name=TCONS_00064368|organism=Clytia hemisphaerica|type=transcript|length=1781bp|location=Sequence derived from alignment at scaffold_412:71802..73582+ (Clytia hemisphaerica)
TTGAATTAACAAAACAAATGGTTTCATGCCCTAAGTGGATTATCGTAACT
ATTGGTGACGTAAATTTCAAAATGTGCTGATGCAATCATTTCTAAGAATA
ATGACGTTGATGTTTTTACTTCAAACAAACAATGGTTGTAGATTGGTATC
GATTAATGAGGTAGAATATTATTGCTGATATTGGTAAGTTTTTATGTGTT
GTGTGGGAAAAAcagaggaagaaaaaaaatgtatacGAATAAGGATGTGT
CTATATTGCAGTTCTTACTCTTGGAAAGTTCGATGTTAGTTAGCAAAATG
TTgcgaaaagaaaatattttactttgCTTTCACCTTTTGCATTCATATTA
CTgtattggtttttttttttcacttatttttttcacaaagTGTTTCGATT
TCAAGTTATTGCTTTAGAACCCTTTTTGCTACCATTATAGGATTTTCCCT
ACATTTCtagttgttttttcaaaacacCTTATACCTTATGTAACACGAGA
ATCAGGATGAGCACGAAGAACGATATTTAAGagctaaaagaagaaaatgc
ttctttgaaagaagaaaatgaaaagctTCGACTTCAACTCGAAAAGATGA
CAACGAGTGACCAACATCCAGCAAAAGAGAGCTCGATATCGGTCAGGGAA
TTGGAGGACGAGAAAGATGCTTTGGAGATGAAACACATGAATGAATGGAT
GGAACAAGCTCCAAAATTCTTCCCAAAGGATGGCAAAGATGAAGGTAACA
TAGTTGCCCGTTTAATCCCAGTATGGAGTCCTCGGGTCTAACTACCAAAA
CGACCCTTTGCCTTTTCTTTTCCACAATTTGCATTGCAGGTGCATTGCCT
ACCCGGGGgtggggggcactcgatttttaaacgacggtatgtgccgccaa
aaaattGGCTCTctaaatcggacccttacagtgcagtgaaaggtgcattt
taccgaacgtttctgacccttacagtgtttTTTGGTTGTATATTATCttt
tattttgctgaagccacccaaaaatgagcctgagatgtcgaAAACAATGt
gcaaaaacaaatcaaaatgaatgcgagtcaaaactataaaagtacatcaa
atttttacagtgcatccagctaaaagaagacccttgtagACGAAAAACCT
ACCCAgaagggcggcacatgccgttggtcggaccatatgagtatCTAATA
CAAAGTTAACgagagaaaaattttatcacTTCAAAACATTACTTGGAGTG
AagataaatttgattttcttttccagtTTCAGAGGTGGATGAGGAAACAT
CCTATCGTGAATGGTACCAATGCATGTCTCAAGGGATGAAAAACGATCGC
CCTTATACCGATTTAGAATCTATTTTTGTGCGAAAAGTATTCGGAAAGGC
GCAGTCGTGGGTGGACGTGTGGGCGACAAGCAGGGCGGATGCAAATCCAT
GCCACCCGAACCACCTTCACGTGACCAGCATGTCAACGTGTTGGGTTCAC
AAAATTAGACTGATTCATCCCACCGATAAAAGAAAGAGTTTGGTAAAGGA
TGCATTTTGGGATTGTGAATATAACCCAGCGAACAACGAAATTGtcgaaa
actgtttttttgatAAGGTACCAGAAGATATGTTTTATGGAAAACATAAC
TCGATTGTAGCGCAATTAATTCTCAATAATTAGGTAACGATGTTTAAGAA
GAGGGTAGACAGTTTTTATGCATTATATTGATTGTATATAATTTTGACGA
ATGACCTTCgaaaaacaaaatgtaaaaCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064368-exon-scaffold_412-1491911889:71802..71984 | TCONS_00064368-exon-scaffold_412-1491911889:71802..71984 | Clytia hemisphaerica | exon |
| TCONS_00064368-exon-scaffold_412-1510915933:71802..71984 | TCONS_00064368-exon-scaffold_412-1510915933:71802..71984 | Clytia hemisphaerica | exon |
| TCONS_00064368-exon-scaffold_412-1575043694:71802..71984 | TCONS_00064368-exon-scaffold_412-1575043694:71802..71984 | Clytia hemisphaerica | exon |
| TCONS_00064368-exon-scaffold_412-1491911889:72242..72545 | TCONS_00064368-exon-scaffold_412-1491911889:72242..72545 | Clytia hemisphaerica | exon |
| TCONS_00064368-exon-scaffold_412-1510915933:72242..72545 | TCONS_00064368-exon-scaffold_412-1510915933:72242..72545 | Clytia hemisphaerica | exon |
| TCONS_00064368-exon-scaffold_412-1575043694:72242..72545 | TCONS_00064368-exon-scaffold_412-1575043694:72242..72545 | Clytia hemisphaerica | exon |
| TCONS_00064368-exon-scaffold_412-1491911889:73078..73582 | TCONS_00064368-exon-scaffold_412-1491911889:73078..73582 | Clytia hemisphaerica | exon |
| TCONS_00064368-exon-scaffold_412-1510915933:73078..73582 | TCONS_00064368-exon-scaffold_412-1510915933:73078..73582 | Clytia hemisphaerica | exon |
| TCONS_00064368-exon-scaffold_412-1575043694:73078..73582 | TCONS_00064368-exon-scaffold_412-1575043694:73078..73582 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_412 | supercontig | scaffold_412:71802..73582 + |
Blast
The following BLAST results are available for this feature:
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