TCONS_00064356 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064356
Unique NameTCONS_00064356
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064356 ID=TCONS_00064356|Name=TCONS_00064356|organism=Clytia hemisphaerica|type=transcript|length=510bp
tctttttttgatttcttggaCAATATCCTTTTTTctaatttacaaatttt
catgTGTGAAAATATCCAAAATAGCTGGAATTTGGATGTTTGAATAGTCT
TAATCATTTCAAGGCTTAGCATTAGGtccatttatttttttttaaatgtt
tagtttattgaattgttttttatgatttttattttggtaagattccacat
accactattttattcctttgtgcaaaaaaatatttgcatGAGTTTTCTGT
GGAGATCATGATTTTCCGGAAAAGTATATTTTAAAGCGGCCAGGaatttt
attattgtatttgtaaaattcatttccgAAAAATGTTGTTGATACGCAAA
AAGAAGCTTAGCATATTTTTTTGCCAGGCTTTCGCTTGCATTCTATGTCA
tagtgtttatttttatttacagaTGAGCTATTATGATACTATTTAGATTT
AGAAGGGGCCAACTTTTAGGTTTGAGTGTAAGTCTTGCTGCAGTACACTT
tactcagaat
Run BLAST on NCBI

transcript from alignment at scaffold_411:196961..197470

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064356 ID=TCONS_00064356|Name=TCONS_00064356|organism=Clytia hemisphaerica|type=transcript|length=510bp|location=Sequence derived from alignment at scaffold_411:196961..197470 (Clytia hemisphaerica)
attctgagtaAAGTGTACTGCAGCAAGACTTACACTCAAACCTAAAAGTT
GGCCCCTTCTAAATCTAAATAGTATCATAATAGCTCAtctgtaaataaaa
ataaacactaTGACATAGAATGCAAGCGAAAGCCTGGCAAAAAAATATGC
TAAGCTTCTTTTTGCGTATCAACAACATTTTTcggaaatgaattttacaa
atacaataataaaattCCTGGCCGCTTTAAAATATACTTTTCCGGAAAAT
CATGATCTCCACAGAAAACTCatgcaaatatttttttgcacaaaggaata
aaatagtggtatgtggaatcttaccaaaataaaaatcataaaaaacaatt
caataaactaaacatttaaaaaaaaataaatggaCCTAATGCTAAGCCTT
GAAATGATTAAGACTATTCAAACATCCAAATTCCAGCTATTTTGGATATT
TTCACAcatgaaaatttgtaaattagAAAAAAGGATATTGtccaagaaat
caaaaaaaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040355XLOC_040355Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064356-exon-scaffold_411-1491911889:196961..197470TCONS_00064356-exon-scaffold_411-1491911889:196961..197470Clytia hemisphaericaexon
TCONS_00064356-exon-scaffold_411-1510915933:196961..197470TCONS_00064356-exon-scaffold_411-1510915933:196961..197470Clytia hemisphaericaexon
TCONS_00064356-exon-scaffold_411-1575043694:196961..197470TCONS_00064356-exon-scaffold_411-1575043694:196961..197470Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_411supercontigscaffold_411:196961..197470 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.707198	0.229876	0.133454	0.261128	3.65583	1.13043	0.909214	0.851195	0.794589	0.492113	0	0.235495	0.0783891	0.488447	0.267713	0.215473	0.619372	0.362764	0	0.131112	0.455839	0.833784	0.405429	0.491459	0	0.338823	0.161618	0.689932	0.261645	0.266575
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064356 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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