TCONS_00064355 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064355
Unique NameTCONS_00064355
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064355 ID=TCONS_00064355|Name=TCONS_00064355|organism=Clytia hemisphaerica|type=transcript|length=496bp
ATCTTTGCAAACATCAACGTTCTATTCATTGCCAGATTAAGGCGTCCGTC
GATGAGTCTAAACCCTTCGTGTGTAGGGCATGTGGGAAACGTCTCAAAAG
CGCGGACACGTTAAGACGCCATATCAAATGGTTTCATGCAGACAAATCAC
CGCTGCAAAATAAATATGACGATCATGGATATGGTACACGCCTTATAACC
AAAAAGAAGCTTGTTGGTGGAAACCAACGAAAATTTCACAGTGTACAAAC
GGCTAATAACGCACCCGCTGAATTGGAGTTAATGACATCTACCCAAAACT
GTTATGTTGCGTTGCAATCTGGCCCTGCACGGAACGGGTCGGAATCTAAA
CCATTGACTTCATATAATTGTACATACTGTGAAGGACCAATAGTGAGGTT
TATTTCTTCTCGAGATTTATTGGAACATTGCTTGAAAGTACATAACAAGA
CCTTATAATTATATACTATATAATTTTAATAGAACTAGGGTAAAAA
Run BLAST on NCBI

protein sequence of TCONS_00064355-protein

>TCONS_00064355-protein ID=TCONS_00064355-protein|Name=TCONS_00064355-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
LCKHQRSIHCQIKASVDESKPFVCRACGKRLKSADTLRRHIKWFHADKSP
LQNKYDDHGYGTRLITKKKLVGGNQRKFHSVQTANNAPAELELMTSTQNC
YVALQSGPARNGSESKPLTSYNCTYCEGPIVRFISSRDLLEHCLKVHNKT
L
Run BLAST on NCBI

transcript from alignment at scaffold_411:186711..187206

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064355 ID=TCONS_00064355|Name=TCONS_00064355|organism=Clytia hemisphaerica|type=transcript|length=496bp|location=Sequence derived from alignment at scaffold_411:186711..187206 (Clytia hemisphaerica)
TTTTTACCCTAGTTCTATTAAAATTATATAGTATATAATTATAAGGTCTT
GTTATGTACTTTCAAGCAATGTTCCAATAAATCTCGAGAAGAAATAAACC
TCACTATTGGTCCTTCACAGTATGTACAATTATATGAAGTCAATGGTTTA
GATTCCGACCCGTTCCGTGCAGGGCCAGATTGCAACGCAACATAACAGTT
TTGGGTAGATGTCATTAACTCCAATTCAGCGGGTGCGTTATTAGCCGTTT
GTACACTGTGAAATTTTCGTTGGTTTCCACCAACAAGCTTCTTTTTGGTT
ATAAGGCGTGTACCATATCCATGATCGTCATATTTATTTTGCAGCGGTGA
TTTGTCTGCATGAAACCATTTGATATGGCGTCTTAACGTGTCCGCGCTTT
TGAGACGTTTCCCACATGCCCTACACACGAAGGGTTTAGACTCATCGACG
GACGCCTTAATCTGGCAATGAATAGAACGTTGATGTTTGCAAAGAT

Coding sequence (CDS) from alignment at scaffold_411:186711..187206

>TCONS_00064355 ID=TCONS_00064355|Name=TCONS_00064355|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_411:186711..187206 (Clytia hemisphaerica)
TTATAAGGTCTTGTTATGTACTTTCAAGCAATGTTCCAATAAATCTCGAG
AAGAAATAAACCTCACTATTGGTCCTTCACAGTATGTACAATTATATGAA
GTCAATGGTTTAGATTCCGACCCGTTCCGTGCAGGGCCAGATTGCAACGC
AACATAACAGTTTTGGGTAGATGTCATTAACTCCAATTCAGCGGGTGCGT
TATTAGCCGTTTGTACACTGTGAAATTTTCGTTGGTTTCCACCAACAAGC
TTCTTTTTGGTTATAAGGCGTGTACCATATCCATGATCGTCATATTTATT
TTGCAGCGGTGATTTGTCTGCATGAAACCATTTGATATGGCGTCTTAACG
TGTCCGCGCTTTTGAGACGTTTCCCACATGCCCTACACACGAAGGGTTTA
GACTCATCGACGGACGCCTTAATCTGGCAATGAATAGAACGTTGATGTTT
GCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040354XLOC_040354Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064355-proteinTCONS_00064355-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064355-exon-scaffold_411-1491911889:186711..187206TCONS_00064355-exon-scaffold_411-1491911889:186711..187206Clytia hemisphaericaexon
TCONS_00064355-exon-scaffold_411-1510915933:186711..187206TCONS_00064355-exon-scaffold_411-1510915933:186711..187206Clytia hemisphaericaexon
TCONS_00064355-exon-scaffold_411-1575043694:186711..187206TCONS_00064355-exon-scaffold_411-1575043694:186711..187206Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_411supercontigscaffold_411:186711..187206 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.2601	8.43814	4.33889	3.28639	57.3458	36.0942	9.05888	12.2005	6.25012	7.09663	4.7591	2.96379	3.45295	2.64675	4.28178	3.54042	5.01109	4.56551	0.919845	0.825044	2.74893	3.32293	14.3153	13.2724	8.75958	10.8974	1.69502	1.44718	12.3484	12.4412
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064355 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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