TCONS_00064352 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064352
Unique NameTCONS_00064352
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1967

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064352 ID=TCONS_00064352|Name=TCONS_00064352|organism=Clytia hemisphaerica|type=transcript|length=1967bp
TTTTCAACACACGTATTATTTTAACCTTTCTTGTATAATTATGCACAATA
TactatattaaaaaaatttaaacacagaaaaattatgaaattatagGAAT
TTATAAAAATCGAACAGATTATGCATATTAAAAAAAGAGTGATAAATCAA
TGCTCAAAGGCTTAAGGTTGAAAGCTCCCAAAAATGAATTTCAGATGGTA
AAACTTGTTGACATTTTTTCACGGTTTCAAACAAACACCCAAATAGTATA
AACAAATTATAagagatttttgttttcattcaaaatatagCTGAATATAA
CCCTTCGAAATTTCAAAGACACCAAATTTGTTTCATGTAAGAGTTCTAAA
GCTTCCCTGAATTGTCTTGGAAACACTTTTAGAAATAGTGTATTCAGCTA
AGCATTATTCTTACTATTTAGAATTGTTCTTAACCATAGGCCTCTTCTCT
CAATCCTGAAACCTCACTTAATTATTATAAAATTTCAGGACCCTTAATGA
CTGTTAATGATTATGTAAATTAGAAATGCATTTTTTAAGGAACCAAATCA
ATTAGTTGACATAAACACACTAAGTGCAGCATAACAATAAAGCATAATAT
GTACAATTTTATAGAAGGTTTATTAGAATATATTTAAAGAGTTTTGATAT
TCAATTACGCGGAGTTATCAAATCTTCTTCATCCTCTGGGTCCTGATCAA
TTACTTCAATAGCTGCAGCATCTTGAACTTCTACCTCATCATCTTGTTGT
TCTTTAGCTTCAAAAGATTCATCTTTTTCTTCGGGTTCAGTTCCCGTCAT
AGTTTTTTCTAGAGCTTGGTCTTCACTCATTGTAACAATGTGTATAATAT
CAGTGTCATTTTCAGTGGTATCGTAAGTCGAGTCAACAATTTCCATTTGC
TCAGTTGATTCTACTTTAATAGCAACTTTTAATGTTTCGTTTCTTTCAGC
CGACTGTAAAGCTTTTCCGATGAAATAAAGGTCTTGAAGATTGGGCTTAG
GCAATTCTTCTGGGTTTTCTTTAGTAGCAATCAAATTTTTCTCCATTAAT
TCCTTTAAGTCCTCGTTATGACACAAATGTTCGTTAGTGTTATTTAGAGC
AGAAAACATCTCTTTCAATGACTGAAAATCTACATTTTCCTCTTCTTCAT
TGTGTAAGTCTTCGTAAATTTTCAGAGCATCTTGCATTTGAATACGAATG
AAAGCACAACCATTACAAATTTTACTTTGAGCTTTTGCCTTAGCTGCAGC
AGCTTTCTCTGCTGCTTTCTTATAACGTCCTCGCTCTATAGGAACACCAT
CAGGTGGAGGTGGGCCAAAATTGGGATAAGTTAGTCGCACAAGTTTTCTA
GGTGAATCATTGTCTGTTGTAACTTCATTGCTATTCAAGGGGCGACGTCC
TTTCTTGGGAGCTTCAACAAGTTGCATAATACGATGGGCTTTATCTCCTT
TTCTCTGTCCTTGGTCTTTCAAAAATGTGATTGAACTATGAGAATTTATT
GCACATCGGAAATTTGTTTTCCAAAGAGCAGGCCTGGCTTTATCAACACC
CTCTCGGTATCGATTTGTGTAAATTGCCCATGCTTTAAAAAGGGAAACAT
CTCCATCCTCCCAGCCATTTCTAGAAGCATGTTTCCAAGGTACATGAAAT
ATTTTCTCCTTTCTATCAATCCAATAAACACCTTTGTGCTTTCCACTATC
TACTTGTTCCTTTAACCATTCTGGTAAACTCAATCGAAACAAATTTGGAC
TGGAATTAGCAGCTAAAACTGGACATAACTGCTCTTCTTCTGCTACCCCT
TCAGTATCAGTAGTTGTAGTGATAGCTTCAGCTGCATCAGTGGTCgacat
ttttaaagttttgaaactGAAATCGAAAGAACTTTCGCCTTCGATTTCAA
CTGCACCTCGGACACGTCGagtgaaaagaaaagtgaaaggGGCTAGGCCT
GGGGATAGGAAGTTTCG
Run BLAST on NCBI

protein sequence of TCONS_00064352-protein

>TCONS_00064352-protein ID=TCONS_00064352-protein|Name=TCONS_00064352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp
RNFLSPGLAPFTFLFTRRVRGAVEIEGESSFDFSFKTLKMSTTDAAEAIT
TTTDTEGVAEEEQLCPVLAANSSPNLFRLSLPEWLKEQVDSGKHKGVYWI
DRKEKIFHVPWKHASRNGWEDGDVSLFKAWAIYTNRYREGVDKARPALWK
TNFRCAINSHSSITFLKDQGQRKGDKAHRIMQLVEAPKKGRRPLNSNEVT
TDNDSPRKLVRLTYPNFGPPPPDGVPIERGRYKKAAEKAAAAKAKAQSKI
CNGCAFIRIQMQDALKIYEDLHNEEEENVDFQSLKEMFSALNNTNEHLCH
NEDLKELMEKNLIATKENPEELPKPNLQDLYFIGKALQSAERNETLKVAI
KVESTEQMEIVDSTYDTTENDTDIIHIVTMSEDQALEKTMTGTEPEEKDE
SFEAKEQQDDEVEVQDAAAIEVIDQDPEDEEDLITPRN
Run BLAST on NCBI

transcript from alignment at scaffold_411:88404..90370

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064352 ID=TCONS_00064352|Name=TCONS_00064352|organism=Clytia hemisphaerica|type=transcript|length=1967bp|location=Sequence derived from alignment at scaffold_411:88404..90370 (Clytia hemisphaerica)
CGAAACTTCCTATCCCCAGGCCTAGCCcctttcacttttcttttcactCG
ACGTGTCCGAGGTGCAGTTGAAATCGAAGGCGAAAGTTCTTTCGATTTCa
gtttcaaaactttaaaaatgtcGACCACTGATGCAGCTGAAGCTATCACT
ACAACTACTGATACTGAAGGGGTAGCAGAAGAAGAGCAGTTATGTCCAGT
TTTAGCTGCTAATTCCAGTCCAAATTTGTTTCGATTGAGTTTACCAGAAT
GGTTAAAGGAACAAGTAGATAGTGGAAAGCACAAAGGTGTTTATTGGATT
GATAGAAAGGAGAAAATATTTCATGTACCTTGGAAACATGCTTCTAGAAA
TGGCTGGGAGGATGGAGATGTTTCCCTTTTTAAAGCATGGGCAATTTACA
CAAATCGATACCGAGAGGGTGTTGATAAAGCCAGGCCTGCTCTTTGGAAA
ACAAATTTCCGATGTGCAATAAATTCTCATAGTTCAATCACATTTTTGAA
AGACCAAGGACAGAGAAAAGGAGATAAAGCCCATCGTATTATGCAACTTG
TTGAAGCTCCCAAGAAAGGACGTCGCCCCTTGAATAGCAATGAAGTTACA
ACAGACAATGATTCACCTAGAAAACTTGTGCGACTAACTTATCCCAATTT
TGGCCCACCTCCACCTGATGGTGTTCCTATAGAGCGAGGACGTTATAAGA
AAGCAGCAGAGAAAGCTGCTGCAGCTAAGGCAAAAGCTCAAAGTAAAATT
TGTAATGGTTGTGCTTTCATTCGTATTCAAATGCAAGATGCTCTGAAAAT
TTACGAAGACTTACACAATGAAGAAGAGGAAAATGTAGATTTTCAGTCAT
TGAAAGAGATGTTTTCTGCTCTAAATAACACTAACGAACATTTGTGTCAT
AACGAGGACTTAAAGGAATTAATGGAGAAAAATTTGATTGCTACTAAAGA
AAACCCAGAAGAATTGCCTAAGCCCAATCTTCAAGACCTTTATTTCATCG
GAAAAGCTTTACAGTCGGCTGAAAGAAACGAAACATTAAAAGTTGCTATT
AAAGTAGAATCAACTGAGCAAATGGAAATTGTTGACTCGACTTACGATAC
CACTGAAAATGACACTGATATTATACACATTGTTACAATGAGTGAAGACC
AAGCTCTAGAAAAAACTATGACGGGAACTGAACCCGAAGAAAAAGATGAA
TCTTTTGAAGCTAAAGAACAACAAGATGATGAGGTAGAAGTTCAAGATGC
TGCAGCTATTGAAGTAATTGATCAGGACCCAGAGGATGAAGAAGATTTGA
TAACTCCGCGTAATTGAATATCAAAACTCTTTAAATATATTCTAATAAAC
CTTCTATAAAATTGTACATATTATGCTTTATTGTTATGCTGCACTTAGTG
TGTTTATGTCAACTAATTGATTTGGTTCCTTAAAAAATGCATTTCTAATT
TACATAATCATTAACAGTCATTAAGGGTCCTGAAATTTTATAATAATTAA
GTGAGGTTTCAGGATTGAGAGAAGAGGCCTATGGTTAAGAACAATTCTAA
ATAGTAAGAATAATGCTTAGCTGAATACACTATTTCTAAAAGTGTTTCCA
AGACAATTCAGGGAAGCTTTAGAACTCTTACATGAAACAAATTTGGTGTC
TTTGAAATTTCGAAGGGTTATATTCAGctatattttgaatgaaaacaaaa
atctctTATAATTTGTTTATACTATTTGGGTGTTTGTTTGAAACCGTGAA
AAAATGTCAACAAGTTTTACCATCTGAAATTCATTTTTGGGAGCTTTCAA
CCTTAAGCCTTTGAGCATTGATTTATCACTCTTTTTTTAATATGCATAAT
CTGTTCGATTTTTATAAATTCctataatttcataatttttctgtgtttaa
atttttttaatatagtATATTGTGCATAATTATACAAGAAAGGTTAAAAT
AATACGTGTGTTGAAAA

Coding sequence (CDS) from alignment at scaffold_411:88404..90370

>TCONS_00064352 ID=TCONS_00064352|Name=TCONS_00064352|organism=Clytia hemisphaerica|type=CDS|length=1317bp|location=Sequence derived from alignment at scaffold_411:88404..90370 (Clytia hemisphaerica)
CGAAACTTCCTATCCCCAGGCCTAGCCcctttcacttttcttttcactCG
ACGTGTCCGAGGTGCAGTTGAAATCGAAGGCGAAAGTTCTTTCGATTTCa
gtttcaaaactttaaaaatgtcGACCACTGATGCAGCTGAAGCTATCACT
ACAACTACTGATACTGAAGGGGTAGCAGAAGAAGAGCAGTTATGTCCAGT
TTTAGCTGCTAATTCCAGTCCAAATTTGTTTCGATTGAGTTTACCAGAAT
GGTTAAAGGAACAAGTAGATAGTGGAAAGCACAAAGGTGTTTATTGGATT
GATAGAAAGGAGAAAATATTTCATGTACCTTGGAAACATGCTTCTAGAAA
TGGCTGGGAGGATGGAGATGTTTCCCTTTTTAAAGCATGGGCAATTTACA
CAAATCGATACCGAGAGGGTGTTGATAAAGCCAGGCCTGCTCTTTGGAAA
ACAAATTTCCGATGTGCAATAAATTCTCATAGTTCAATCACATTTTTGAA
AGACCAAGGACAGAGAAAAGGAGATAAAGCCCATCGTATTATGCAACTTG
TTGAAGCTCCCAAGAAAGGACGTCGCCCCTTGAATAGCAATGAAGTTACA
ACAGACAATGATTCACCTAGAAAACTTGTGCGACTAACTTATCCCAATTT
TGGCCCACCTCCACCTGATGGTGTTCCTATAGAGCGAGGACGTTATAAGA
AAGCAGCAGAGAAAGCTGCTGCAGCTAAGGCAAAAGCTCAAAGTAAAATT
TGTAATGGTTGTGCTTTCATTCGTATTCAAATGCAAGATGCTCTGAAAAT
TTACGAAGACTTACACAATGAAGAAGAGGAAAATGTAGATTTTCAGTCAT
TGAAAGAGATGTTTTCTGCTCTAAATAACACTAACGAACATTTGTGTCAT
AACGAGGACTTAAAGGAATTAATGGAGAAAAATTTGATTGCTACTAAAGA
AAACCCAGAAGAATTGCCTAAGCCCAATCTTCAAGACCTTTATTTCATCG
GAAAAGCTTTACAGTCGGCTGAAAGAAACGAAACATTAAAAGTTGCTATT
AAAGTAGAATCAACTGAGCAAATGGAAATTGTTGACTCGACTTACGATAC
CACTGAAAATGACACTGATATTATACACATTGTTACAATGAGTGAAGACC
AAGCTCTAGAAAAAACTATGACGGGAACTGAACCCGAAGAAAAAGATGAA
TCTTTTGAAGCTAAAGAACAACAAGATGATGAGGTAGAAGTTCAAGATGC
TGCAGCTATTGAAGTAATTGATCAGGACCCAGAGGATGAAGAAGATTTGA
TAACTCCGCGTAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040351XLOC_040351Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064352-exon-scaffold_411-1491911889:88404..90370TCONS_00064352-exon-scaffold_411-1491911889:88404..90370Clytia hemisphaericaexon
TCONS_00064352-exon-scaffold_411-1510915933:88404..90370TCONS_00064352-exon-scaffold_411-1510915933:88404..90370Clytia hemisphaericaexon
TCONS_00064352-exon-scaffold_411-1575043694:88404..90370TCONS_00064352-exon-scaffold_411-1575043694:88404..90370Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064352-proteinTCONS_00064352-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_411supercontigscaffold_411:88404..90370 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.5301	15.5664	5.25542	4.47097	35.7331	25.8927	24.1293	23.3426	10.2206	9.07883	13.9849	10.8597	16.9112	20.1689	16.8108	17.3396	11.3168	17.0496	10.9837	6.62233	15.2388	14.6184	33.1811	30.3137	18.3088	20.9231	5.92177	7.41256	18.0312	23.7339
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001346Interferon_reg_fact_DNA-bd_dom
IPR011991WHTH_DNA-bd_dom
IPR019817Interferon_reg_fac_CS
Vocabulary: Molecular Function
TermDefinition
GO:0000975regulatory region DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0000975 regulatory region DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
[Close]
BLAST of TCONS_00064352 vs. Swiss-Prot (Human)
Match: IRF2 (Interferon regulatory factor 2 OS=Homo sapiens GN=IRF2 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 4.638e-27
Identity = 46/108 (42.59%), Postives = 76/108 (70.37%), Query Frame = -1 
Query: 1416 RLSLPEWLKEQVDSGKHKGVYWIDRKEKIFHVPWKHASRNGWE-DGDVSLFKAWAIYTNRYREGVDKARPALWKTNFRCAINSHSSITFLKDQGQRKGDKAHRIMQLV 1736
            R+ +  WL+EQ++S    G+ W+++++KIF +PW HA+R+GW+ + D  LF+ WAI+T +++ GVDK  P  WK NFRCA+NS   I  +KD+  +KG+ A R+ +++
Sbjct:    5 RMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRML 112
The following BLAST results are available for this feature:
BLAST of TCONS_00064352 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IRF24.638e-2742.59Interferon regulatory factor 2 OS=Homo sapiens GN=... [more]
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