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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064344 ID=TCONS_00064344|Name=TCONS_00064344|organism=Clytia hemisphaerica|type=transcript|length=3418bpRun BLAST on NCBI protein sequence of TCONS_00064344-protein >TCONS_00064344-protein ID=TCONS_00064344-protein|Name=TCONS_00064344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1069bp MKSVTPENMKNLQMAIETMRERGMENDPRYQQMLNLARMNGMNFPNTGMPRun BLAST on NCBI transcript from alignment at scaffold_411:133289..166860- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064344 ID=TCONS_00064344|Name=TCONS_00064344|organism=Clytia hemisphaerica|type=transcript|length=33572bp|location=Sequence derived from alignment at scaffold_411:133289..166860- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_411:133289..166860- >TCONS_00064344 ID=TCONS_00064344|Name=TCONS_00064344|organism=Clytia hemisphaerica|type=CDS|length=70554bp|location=Sequence derived from alignment at scaffold_411:133289..166860- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064344 vs. Swiss-Prot (Human)
Match: SMCA2 (Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2) HSP 1 Score: 690.649 bits (1781), Expect = 0.000e+0 Identity = 332/461 (72.02%), Postives = 402/461 (87.20%), Query Frame = 2
Query: 2033 TSMDSRNYYSLAHSTLEIIKEQPKSLVGGTLKEYQVKGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLVEKKKMNGPFLIILPLSTMSNWVLEFEKWAPSIIAISYKGSPTYRREAAQQIRMGRFNVVMTTYEYVMKDKAVLSKVKWKYMIVDEGHRMKNHNCKLTQTLNTHYLAPFRILLTGTPLQNRLPELWALMNFLLPSIFNSSSTFESWFNAPFAMTGXXXXXXXXXXXXXXRRLHKVLRPFLLRRLKKEVESQLPDKVEFIVKCDMSALQKIIYKHMQTKGILLTXXXXXXXXXXXXXXXXMLMNTIMQLRKICNHPFMFQHIEEAIAEHTGHANGVVSGRDIVRVSGKFDILDKMLSKLAVTGHKSLIFCQMTQCMTIMEDYLNWKQMPYLRLDGTTKADDRSDLLKIFNAKDSPYMVFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 3415
++ S++YY++AH+ E +++Q L+ GTLK YQ++GLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYL+E K++NGP+LII+PLST+SNW EF+KWAPS++ ISYKG+P RR Q+R G+FNV++TTYEY++KDK +L+K++WKYMIVDEGHRMKNH+CKLTQ LNTHY+AP RILLTGTPLQN+LPELWAL+NFLLP+IF S STFE WFNAPFAMTGE+++LNEEET+LIIRRLHKVLRPFLLRRLKKEVESQLP+KVE+++KCDMSALQKI+Y+HMQ KGILLTDGSEKDK KG T LMNTIMQLRKICNHP+MFQHIEE+ AEH G++NGV++G ++ R SGKF++LD++L KL T H+ L+FCQMT MTIMEDY ++ YLRLDGTTK++DR+ LLK FN S Y +FLLSTRAGGLGLNLQ+ADTV+IFDSDWNPHQ
Sbjct: 694 SARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKT--LMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152 HSP 2 Score: 270.011 bits (689), Expect = 5.302e-74 Identity = 165/305 (54.10%), Postives = 228/305 (74.75%), Query Frame = 2
Query: 1067 KSRFAPVTKPMGIDPVDIMKEREFRIQSRIVHRIDQLQNLPASITESLRTKALIELKALRLLNFQKQLRSEMVTSMRKDTTLETALNYRAYKRSKRQTLREARMTXXXXXXXXXXXXXXXXAKHLEFINALLQHGREFREFHRSAQSRIQKTNKVIMGYHANFDXXXXXXXXXXXXXXXXMLMAEDEDGYRQLIDEKKNQRLHYLLSQTDEYITGLMMLVSQHKKEVDIKKRPKKSRRKTE-------------------DDDEEARHVPVE--NIETGVKLTGDDAPLSTELDQWLIENPGFKV 1918
+SR +P+ KP G+DPV+I++ERE+R+Q+RI HRI +L+NLP S+ LRTKA +ELKALRLLNFQ+QLR E+V MR+DTTLETALN +AYKRSKRQTLREARMTE+LEKQQK+E E+K+R KH E++N++LQH ++F+E+HRS +IQK +K + +HAN +RE++KE ER+E+ER+R LMAEDE+GYR+LID+KK++RL YLL QTDEY+ L LV +HK+ K++ K+ RRK + D+ + +PV+ + ETG L G +AP +++LD WL NPG++V
Sbjct: 325 QSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEV 629 The following BLAST results are available for this feature:
BLAST of TCONS_00064344 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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