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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064342 ID=TCONS_00064342|Name=TCONS_00064342|organism=Clytia hemisphaerica|type=transcript|length=923bpRun BLAST on NCBI protein sequence of TCONS_00064342-protein >TCONS_00064342-protein ID=TCONS_00064342-protein|Name=TCONS_00064342-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp QVIQAGMFNQHSTNAERKMMLTQLLESDSVEDEEESEVPDDETVNQMIARRun BLAST on NCBI transcript from alignment at scaffold_411:114205..131788- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064342 ID=TCONS_00064342|Name=TCONS_00064342|organism=Clytia hemisphaerica|type=transcript|length=17584bp|location=Sequence derived from alignment at scaffold_411:114205..131788- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_411:114205..131788- >TCONS_00064342 ID=TCONS_00064342|Name=TCONS_00064342|organism=Clytia hemisphaerica|type=CDS|length=9210bp|location=Sequence derived from alignment at scaffold_411:114205..131788- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064342 vs. Swiss-Prot (Human)
Match: SMCA2 (Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2) HSP 1 Score: 195.667 bits (496), Expect = 4.391e-55 Identity = 138/310 (44.52%), Postives = 199/310 (64.19%), Query Frame = 3
Query: 3 QVIQAGMFNQHSTNAERKMMLTQLLXXXXXXXXXXXXXXXXXTVNQMIARSEAEFDQFQEIDKENKKAEPRDPETGRRKPNLMQEDELPAWLLRDPXXXXXXXXXXXXXKYYGANAKRQRKDVDYSDSLTEKQWLKALEDGTLEDIEDDMPQPAGSSXXXXXXXXXXXXVDIXXXXXXXXXXXXXXXXVVKFDPIAPELKKKMKKLISAVCQYR------------------NDDERLLMEPFMVLPTRKELPDYYQVIKAPMDMRKIKDRIGQHRYRSLDDLEVDFMVMCTNAQQYNIEQSLSAEEATL 878
+VIQAGMF+Q S++ ER+ L Q + E+EEE EVPDDET+NQMIAR E EFD F +D + ++ + R+P +RKP LM+EDELP+W+++D E+ + EEEEEK +G + RQR+DVDYSD+LTEKQWL+A+EDG LE++E+++ ++ + ++DV+ K R+GRPP K P P+L K+M +I V Y+ N R L E F+ LP+RKELP+YY++I+ P+D +KIK+RI H+YRSL DLE D M++C NAQ +N+E S E++ +
Sbjct: 1197 KVIQAGMFDQKSSSHERRAFL-QAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNP---KRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGS-RQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVE-------KAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDRCNVEKVPSNSQLEIEGNSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIV 1494 The following BLAST results are available for this feature:
BLAST of TCONS_00064342 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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