TCONS_00064342-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064342-protein
Unique NameTCONS_00064342-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length307

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064342-protein ID=TCONS_00064342-protein|Name=TCONS_00064342-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
QVIQAGMFNQHSTNAERKMMLTQLLESDSVEDEEESEVPDDETVNQMIAR
SEAEFDQFQEIDKENKKAEPRDPETGRRKPNLMQEDELPAWLLRDPEEIS
QKEFEEEEEKYYGANAKRQRKDVDYSDSLTEKQWLKALEDGTLEDIEDDM
PQPAGSSKKKKRRRDDEDDVDIGPNGKPLKKGRKGRPPVVKFDPIAPELK
KKMKKLISAVCQYRNDDERLLMEPFMVLPTRKELPDYYQVIKAPMDMRKI
KDRIGQHRYRSLDDLEVDFMVMCTNAQQYNIEQSLSAEEATLHKCFNLVV
VEVGTRA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040343XLOC_040343Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064342TCONS_00064342Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR029295SnAC
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0042393histone binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0042393 histone binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001487BromodomainPRINTSPR00503BROMODOMAINcoord: 250..268
score: 28.15
coord: 234..250
score: 53.07
coord: 268..287
score: 30.65
IPR001487BromodomainSMARTSM00297bromo_6coord: 196..305
e-value: 1.3E-22
score: 91.1
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 218..291
e-value: 5.0E-18
score: 64.9
IPR001487BromodomainGENE3D1.20.920.10coord: 195..300
e-value: 2.4E-22
score: 78.6
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 217..287
score: 17.867
IPR001487BromodomainSUPERFAMILY47370Bromodomaincoord: 181..290
IPR029295Snf2, ATP coupling domainSMARTSM01314SnAC_2coord: 63..135
e-value: 7.6E-19
score: 78.6
IPR029295Snf2, ATP coupling domainPFAMPF14619SnACcoord: 64..135
e-value: 1.9E-14
score: 54.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..111

Blast
[Close]
BLAST of TCONS_00064342-protein vs. Swiss-Prot (Human)
Match: SMCA4 (Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 1.225e-68
Identity = 154/346 (44.51%), Postives = 214/346 (61.85%), Query Frame = 0 
Query:    1 QVIQAGMFNQHSTNAERKMMLTQLLESDSVED--------------------------------EEESEVPDDETVNQMIARSEAEFDQFQEIDKENKKAEPRDPETGRRKPNLMQEDELPAWLLRDPEEISQKEFEEEEEKYYGANAKRQRKDVDYSDSLTEKQWLKALEDGTLEDIEDDMPQPAGSSKKKKRRRD-------------DEDDVDIGPNGKPLKKGRKGRPPVVKFDPIAPELKKKMKKLISAVCQYRNDDE-RLLMEPFMVLPTRKELPDYYQVIKAPMDMRKIKDRIGQHRYRSLDDLEVDFMVMCTNAQQYNIEQSLSAEEA-TLHKCFNLV 299
            +VIQAGMF+Q S++ ER+  L  +LE +  ++                                +EE EVPDDETVNQMIAR E EFD F  +D + ++ E R+P   +RKP LM+EDELP+W+++D  E+ +   EEEEEK +G    R RK+VDYSDSLTEKQWLKA+E+GTLE+IE+++ Q   SS+K+KR  D             D+DD       +  K+ ++GRPP  K  P  P L KKMKK++ AV +Y++    R L E F+ LP+RKELP+YY++I+ P+D +KIK+RI  H+YRSL+DLE D M++C NAQ +N+E SL  E++  L   F  V
Sbjct: 1227 KVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNP---KRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFG-RGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQ-KKSSRKRKRDSDAGSSTPTTSTRSRDKDD-------ESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSV 1560
The following BLAST results are available for this feature:
BLAST of TCONS_00064342-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMCA41.225e-6844.51Transcription activator BRG1 OS=Homo sapiens GN=SM... [more]
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