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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064337 ID=TCONS_00064337|Name=TCONS_00064337|organism=Clytia hemisphaerica|type=transcript|length=4668bpRun BLAST on NCBI protein sequence of TCONS_00064337-protein >TCONS_00064337-protein ID=TCONS_00064337-protein|Name=TCONS_00064337-protein|organism=Clytia hemisphaerica|type=polypeptide|length=707bp MSIPAATQRPNSPHHNPLLNIDRDMENQVARRRTQQHRQNLNVNPRDRLFRun BLAST on NCBI transcript from alignment at scaffold_411:59170..74064- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064337 ID=TCONS_00064337|Name=TCONS_00064337|organism=Clytia hemisphaerica|type=transcript|length=14895bp|location=Sequence derived from alignment at scaffold_411:59170..74064- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_411:59170..74064- >TCONS_00064337 ID=TCONS_00064337|Name=TCONS_00064337|organism=Clytia hemisphaerica|type=CDS|length=23364bp|location=Sequence derived from alignment at scaffold_411:59170..74064- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00064337 vs. Swiss-Prot (Human)
Match: MBRL (Membralin OS=Homo sapiens GN=TMEM259 PE=1 SV=1) HSP 1 Score: 361.688 bits (927), Expect = 7.569e-109 Identity = 156/254 (61.42%), Postives = 206/254 (81.10%), Query Frame = 3
Query: 1338 PERHYIFEYAKEFGFLRLSPETRKRLKIPIKIVNLDPNKEKCLGDRMSRFILKYFLGYDDIIMNSIKKISDADNNTGFMLNVMTGEHYKFVPWGIGRSSYFISLLLMFLFTISISTLLRYCHQQVFFFIIHVLRMMDMNVVLAFPIAPLFTVILSLVGMETIMSEYFNDTTISFYIILIVWAVDQFDSICCHTTTSQKYWLRFFYLYHFIFYAYHYRFNGQYSSLALAATWFLIQHSMLYFFHNYELPSIEDQM 2099
P+ YI EY+ E+GFLRLS TR+RL IP+ +V LDP +++C GDR SR +L FLGYDDI+M+S+K +++ + N GF+ NV++GEHY+FV + R+SY + +M +FT+S+S LLRY H Q+F FI+ +L+M++MN+ +AFP APL TVIL+LVGME IMSE+FNDTT +FYIILIVW DQ+D+ICCHT+TS+++WLRFFYLYHF FYAYHYRFNGQYSSLAL +W IQHSM+YFFH+YELP+I Q+
Sbjct: 205 PQDEYIVEYSLEYGFLRLSQATRQRLSIPVMVVTLDPTRDQCFGDRFSRLLLDEFLGYDDILMSSVKGLAENEENKGFLRNVVSGEHYRFVSMWMARTSYLAAFAIMVIFTLSVSMLLRYSHHQIFVFIVDLLQMLEMNMAIAFPAAPLLTVILALVGMEAIMSEFFNDTTTAFYIILIVWLADQYDAICCHTSTSKRHWLRFFYLYHFAFYAYHYRFNGQYSSLALVTSWLFIQHSMIYFFHHYELPAILQQV 458 HSP 2 Score: 95.1301 bits (235), Expect = 1.035e-19 Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 3
Query: 726 NLNVNP----RDRLFHALFMKIGHLYLRVVPKNFRLLLEIMVLLKAIFLFSVLTYLHFSFGRMPLNCLNTTEGSWPRDGVLRVQIQ 971
NLN NP RDRLFHALF K+ Y R+ P FR L E VLLKA+F+ VL Y+H F R P+NCL WPR+G+LRV+++
Sbjct: 31 NLNPNPLINVRDRLFHALFFKMAVTYSRLFPPAFRRLFEFFVLLKALFVLFVLAYIHIVFSRSPINCLEHVRDKWPREGILRVEVR 116 The following BLAST results are available for this feature:
BLAST of TCONS_00064337 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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