TCONS_00064316 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064316
Unique NameTCONS_00064316
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064316 ID=TCONS_00064316|Name=TCONS_00064316|organism=Clytia hemisphaerica|type=transcript|length=322bp
GAGTTTGATGTCAACAAAACAATGGTGAGCGAGATGTGCAAACACTTCAG
GGAGGCTTGTCAAACGTGGATTGTAGAGACCAACCCAGTGTTTCTTGGAG
GGGAAGGGAAACATGTACTGGATTGTGACGATGTAAGATGCGAGATCCTC
ATACTAACGGAGACGGACAAACAGTTCGGTTATTTGTTACATAACTCAAA
TAACAGATACCAACACGGTTGGCCCATTCCTGTGAAGGCAGGAACATTTG
TTTTTTCAGAGAAAGTTCTCAATGTCCCAGCTGGTTGTCAACAAAGCCAG
AATGTCcagctttttcaaggac
Run BLAST on NCBI

protein sequence of TCONS_00064316-protein

>TCONS_00064316-protein ID=TCONS_00064316-protein|Name=TCONS_00064316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
EFDVNKTMVSEMCKHFREACQTWIVETNPVFLGGEGKHVLDCDDVRCEIL
ILTETDKQFGYLLHNSNNRYQHGWPIPVKAGTFVFSEKVLNVPAGCQQSQ
NVQLFQG
Run BLAST on NCBI

transcript from alignment at scaffold_410:247146..247709-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064316 ID=TCONS_00064316|Name=TCONS_00064316|organism=Clytia hemisphaerica|type=transcript|length=564bp|location=Sequence derived from alignment at scaffold_410:247146..247709- (Clytia hemisphaerica)
GAGTTTGATGTCAACAAAACAATGGTGAGCGAGATGTGCAAACACTTCAG
GGAGGCTTGTCAAACGTGGATTGTAGAGACCAACCCAGTGTTTCTTGGAG
GGGAAGGGAAACATGTACTGGTGAAAAGATTTAAGGTATTTTTATTCTTT
ATCCACCAGTCTAAACAAGGTTGTTTATGAATTGTGCTAGCTGATGGAGG
GCGGTGTCGGTATTTAATTTTTTTTCAACCATCCCGGATCTTATGAGGGC
CAATTTTGATTTTTTCAAATATTTTAAGCTGTCAAATAGATAGGATAATA
AACTCGTTTTTCGGTGAACAGACCAAATATAAATAAAAATAAAAATCGTT
CTTGACTTGAAGGATTGTGACGATGTAAGATGCGAGATCCTCATACTAAC
GGAGACGGACAAACAGTTCGGTTATTTGTTACATAACTCAAATAACAGAT
ACCAACACGGTTGGCCCATTCCTGTGAAGGCAGGAACATTTGTTTTTTCA
GAGAAAGTTCTCAATGTCCCAGCTGGTTGTCAACAAAGCCAGAATGTCCA
GCTTTTTCAAGGAC

Coding sequence (CDS) from alignment at scaffold_410:247146..247709-

>TCONS_00064316 ID=TCONS_00064316|Name=TCONS_00064316|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_410:247146..247709- (Clytia hemisphaerica)
GATTGTGACGATGTAAGATGCGAGATCCTCATACTAACGGAGACGGACAA
ACAGTTCGGTTATTTGTTACATAACTCAAATAACAGATACCAACACGGTT
GGCCCATTCCTGTGAAGGCAGGAACATTTGTTTTTTCAGAGAAAGTTCTC
AATGTCCCAGCTGGTTGTCAACAAAGCCAGAATGTCCAGCTTTTTCAAGG
AGAGTTTGATGTCAACAAAACAATGGTGAGCGAGATGTGCAAACACTTCA
GGGAGGCTTGTCAAACGTGGATTGTAGAGACCAACCCAGTGTTTCTTGGA
GGGGAAGGGAAACATGTACTGGATTGTGACGATGTAAGATGCGAGATCCT
CATACTAACGGAGACGGACAAACAGTTCGGTTATTTGTTACATAACTCAA
ATAACAGATACCAACACGGTTGGCCCATTCCTGTGAAGGCAGGAACATTT
GTTTTTTCAGAGAAAGTTCTCAATGTCCCAGCTGGTTGTCAACAAAGCCA
GAATGTCCAGCTTTTTCAAGGAGAGTTTGATGTCAACAAAACAATGGTGA
GCGAGATGTGCAAACACTTCAGGGAGGCTTGTCAAACGTGGATTGTAGAG
ACCAACCCAGTGTTTCTTGGAGGGGAAGGGAAACATGTACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040322XLOC_040322Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064316-proteinTCONS_00064316-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064316-exon-scaffold_410-1575043694:247590..247709TCONS_00064316-exon-scaffold_410-1575043694:247590..247709Clytia hemisphaericaexon
TCONS_00064316-exon-scaffold_410-1575043694:247146..247347TCONS_00064316-exon-scaffold_410-1575043694:247146..247347Clytia hemisphaericaexon
TCONS_00064316-exon-scaffold_410-1510915933:247590..247709TCONS_00064316-exon-scaffold_410-1510915933:247590..247709Clytia hemisphaericaexon
TCONS_00064316-exon-scaffold_410-1510915933:247146..247347TCONS_00064316-exon-scaffold_410-1510915933:247146..247347Clytia hemisphaericaexon
TCONS_00064316-exon-scaffold_410-1491911889:247590..247709TCONS_00064316-exon-scaffold_410-1491911889:247590..247709Clytia hemisphaericaexon
TCONS_00064316-exon-scaffold_410-1491911889:247146..247347TCONS_00064316-exon-scaffold_410-1491911889:247146..247347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_410supercontigscaffold_410:247146..247709 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.669083	0	0.377855	0	0	0	0.209078	1.25272	1.30096	0.356523	0.382604	0.942673	1.44931	9.3441	3.84133	0.607056	0.888302	0	0.654492	0.337056	0.902443	0.860929	0.918806	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top