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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064293 ID=TCONS_00064293|Name=TCONS_00064293|organism=Clytia hemisphaerica|type=transcript|length=1671bpRun BLAST on NCBI protein sequence of TCONS_00064293-protein >TCONS_00064293-protein ID=TCONS_00064293-protein|Name=TCONS_00064293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp MEAREYIYVYTLKRERRKNLVHFFSGFLTFYNKPQFLFYFFHIFQSPLLVRun BLAST on NCBI transcript from alignment at scaffold_410:15219..115901+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064293 ID=TCONS_00064293|Name=TCONS_00064293|organism=Clytia hemisphaerica|type=transcript|length=100683bp|location=Sequence derived from alignment at scaffold_410:15219..115901+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_410:15219..115901+ >TCONS_00064293 ID=TCONS_00064293|Name=TCONS_00064293|organism=Clytia hemisphaerica|type=CDS|length=16086bp|location=Sequence derived from alignment at scaffold_410:15219..115901+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064293 vs. Swiss-Prot (Human)
Match: PUS10 (Putative tRNA pseudouridine synthase Pus10 OS=Homo sapiens GN=PUS10 PE=1 SV=1) HSP 1 Score: 287.73 bits (735), Expect = 4.404e-89 Identity = 141/285 (49.47%), Postives = 190/285 (66.67%), Query Frame = 3
Query: 435 ITETVNKLPDSKVVQYTSVPPERAEKPCDI-NISFVHEPIYIAGRYNKYSRELSQTPWLIDGERKTESSVQELICDRLIKATGASEVKFMSSGREDCDVRMLGKGRPFVAGLVNPKTTNLPADEVRFLEREINQSTELVGVRDLQVTDKESLVILKAGENEKKKCYSAKIWCPEPIDDEQLDGINTTKDLKIGQKTPLRVLHRRPLCVRERTIYSMNIQRINKEEDTAHHYQLQLKTEAGTYIKEFVHGDLGRTIPSMCTLMDAPFDILELDVDEVQLDWPPKIE 1286
+ + +NK+ + ++ PP + C + I H +++AGRYNKYSR L QTPW+IDGERK ESSV+ELI D L+ A F SSGRED DVR LG GRPF LVNP + + E++ L+++IN S+ + VRDLQ+ +E++ +K GE EK K YSA IW + I + ++ +N KDLKI QKTPLRVLHRRPL VR R I+ M Q +++ HH++L LKT+AGTYIKEFVHGD GRT P++ +LM+ DILELDV+ V +DWPP ++
Sbjct: 249 VMKALNKIKEEDFLKQFPCPPNSPKAVCAVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNKIQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDIEFLNDIKDLKIDQKTPLRVLHRRPLAVRARVIHFMETQYVDE-----HHFRLHLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVDWPPALD 528 The following BLAST results are available for this feature:
BLAST of TCONS_00064293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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