TCONS_00064261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064261
Unique NameTCONS_00064261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064261 ID=TCONS_00064261|Name=TCONS_00064261|organism=Clytia hemisphaerica|type=transcript|length=410bp
TTCTACCTTTTTATATGAAATCGAGGGTACACTGAACTCACGCCCTCTCA
GTTACTTGAACGAAGATGACATTGACGAGCCGCTTACACCTTTTCATTTA
CCTTATGGCAGAAACATTTTATCGAAAGCGAAGTTAAACAAAACTCGACA
CACTTTTCCAACACACAAGAAACGTTTAAAACATATTTCTTCTTTACTTG
ACCATTTTTGGCGTCGTTTTTCAACTGGTTACCTCGGTGATCTCAAACAA
TTCAACTTGTACCGAAAACAAAATTCATCCATAAAACAGGACATTTCAGT
CGGGGACATCGTGCTTTTAAAAGAAGATCTCCTTCCACGCAATCGCTGGA
GAATGGGAAAAGTGAAAGAATTGGTCATTGGACGTGATGGATTCGTTAGA
GGTGCGAAGC
Run BLAST on NCBI

protein sequence of TCONS_00064261-protein

>TCONS_00064261-protein ID=TCONS_00064261-protein|Name=TCONS_00064261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
STFLYEIEGTLNSRPLSYLNEDDIDEPLTPFHLPYGRNILSKAKLNKTRH
TFPTHKKRLKHISSLLDHFWRRFSTGYLGDLKQFNLYRKQNSSIKQDISV
GDIVLLKEDLLPRNRWRMGKVKELVIGRDGFVRGAK
Run BLAST on NCBI

transcript from alignment at scaffold_41:205020..205429

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064261 ID=TCONS_00064261|Name=TCONS_00064261|organism=Clytia hemisphaerica|type=transcript|length=410bp|location=Sequence derived from alignment at scaffold_41:205020..205429 (Clytia hemisphaerica)
GCTTCGCACCTCTAACGAATCCATCACGTCCAATGACCAATTCTTTCACT
TTTCCCATTCTCCAGCGATTGCGTGGAAGGAGATCTTCTTTTAAAAGCAC
GATGTCCCCGACTGAAATGTCCTGTTTTATGGATGAATTTTGTTTTCGGT
ACAAGTTGAATTGTTTGAGATCACCGAGGTAACCAGTTGAAAAACGACGC
CAAAAATGGTCAAGTAAAGAAGAAATATGTTTTAAACGTTTCTTGTGTGT
TGGAAAAGTGTGTCGAGTTTTGTTTAACTTCGCTTTCGATAAAATGTTTC
TGCCATAAGGTAAATGAAAAGGTGTAAGCGGCTCGTCAATGTCATCTTCG
TTCAAGTAACTGAGAGGGCGTGAGTTCAGTGTACCCTCGATTTCATATAA
AAAGGTAGAA

Coding sequence (CDS) from alignment at scaffold_41:205020..205429

>TCONS_00064261 ID=TCONS_00064261|Name=TCONS_00064261|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_41:205020..205429 (Clytia hemisphaerica)
CTTCGCACCTCTAACGAATCCATCACGTCCAATGACCAATTCTTTCACTT
TTCCCATTCTCCAGCGATTGCGTGGAAGGAGATCTTCTTTTAAAAGCACG
ATGTCCCCGACTGAAATGTCCTGTTTTATGGATGAATTTTGTTTTCGGTA
CAAGTTGAATTGTTTGAGATCACCGAGGTAACCAGTTGAAAAACGACGCC
AAAAATGGTCAAGTAAAGAAGAAATATGTTTTAAACGTTTCTTGTGTGTT
GGAAAAGTGTGTCGAGTTTTGTTTAACTTCGCTTTCGATAAAATGTTTCT
GCCATAAGGTAAATGAAAAGGTGTAAGCGGCTCGTCAATGTCATCTTCGT
TCAAGTAACTGAGAGGGCGTGAGTTCAGTGTACCCTCGATTTCATATAAA
AAGGTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040281XLOC_040281Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064261-proteinTCONS_00064261-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064261-exon-scaffold_41-1491911889:205020..205429TCONS_00064261-exon-scaffold_41-1491911889:205020..205429Clytia hemisphaericaexon
TCONS_00064261-exon-scaffold_41-1510915933:205020..205429TCONS_00064261-exon-scaffold_41-1510915933:205020..205429Clytia hemisphaericaexon
TCONS_00064261-exon-scaffold_41-1575043694:205020..205429TCONS_00064261-exon-scaffold_41-1575043694:205020..205429Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:205020..205429 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.176506	0.172121	0.199849	0.195521	104.573	60.6252	6.84934	6.56417	1.29291	3.06892	0	0.270845	0.393794	0.609547	0	0.107558	0.952025	0.390376	2.38392	1.99596	0.170656	0.450622	0	0.183991	0.468542	0.676521	0.242025	0.258296	0.195908	0.199599
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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